Wall clock time and date at job start Wed Apr 1 2020 04:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35243 * 126.06995 * 2 1 4 4 C 1.40410 * 107.86219 * 180.17577 * 3 2 1 5 5 N 1.40194 * 125.96625 * 179.82881 * 4 3 2 6 6 C 1.34777 * 120.00534 * 359.71904 * 5 4 3 7 7 O 1.21592 * 119.99772 * 5.31054 * 6 5 4 8 8 N 1.34770 * 119.99878 * 185.31365 * 6 5 4 9 9 C 1.48207 * 118.40875 * 357.05009 * 8 6 5 10 10 C 1.54401 * 110.81009 * 138.88386 * 9 8 6 11 11 N 1.44674 * 109.35261 * 320.82112 * 10 9 8 12 12 C 1.45921 * 110.12917 * 96.02007 * 11 10 9 13 13 C 1.47952 * 114.45471 * 269.35180 * 12 11 10 14 14 C 1.44477 * 118.40547 * 177.32369 * 8 6 5 15 15 C 1.53222 * 114.93544 * 137.34129 * 14 8 6 16 16 C 1.53882 * 86.95778 * 268.83352 * 15 14 8 17 17 C 1.53285 * 114.87444 * 37.91522 * 14 8 6 18 18 N 1.31203 * 108.05586 * 359.56887 * 4 3 2 19 19 N 1.34961 * 126.06651 * 179.70671 * 2 1 3 20 20 C 1.46503 * 125.97762 * 359.95361 * 19 2 1 21 21 C 1.50700 * 109.47196 * 270.00386 * 20 19 2 22 22 H 1.07999 * 120.00183 * 0.02562 * 21 20 19 23 23 C 1.37883 * 119.99605 * 180.02562 * 21 20 19 24 24 N 1.31503 * 119.99952 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99642 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47155 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46599 * 119.99894 * 25 23 21 28 28 H 1.48501 * 109.47081 * 239.99993 * 25 23 21 29 29 H 1.08999 * 109.47143 * 270.30016 * 1 2 3 30 30 H 1.09003 * 109.46980 * 30.29154 * 1 2 3 31 31 H 1.08998 * 109.47226 * 150.29596 * 1 2 3 32 32 H 1.07992 * 126.07131 * 0.02562 * 3 2 1 33 33 H 0.97008 * 119.99613 * 179.72131 * 5 4 3 34 34 H 1.09006 * 109.20887 * 259.22491 * 9 8 6 35 35 H 1.09000 * 109.20543 * 18.53768 * 9 8 6 36 36 H 1.08999 * 109.48755 * 200.86089 * 10 9 8 37 37 H 1.09005 * 109.51373 * 80.79760 * 10 9 8 38 38 H 1.00900 * 111.00737 * 219.35721 * 11 10 9 39 39 H 1.08998 * 108.48651 * 148.06398 * 12 11 10 40 40 H 1.09005 * 108.48094 * 30.64064 * 12 11 10 41 41 H 1.08994 * 109.73971 * 301.32453 * 13 12 11 42 42 H 1.08993 * 109.77728 * 180.64150 * 13 12 11 43 43 H 1.09001 * 113.64078 * 23.35292 * 15 14 8 44 44 H 1.09003 * 113.63207 * 154.31640 * 15 14 8 45 45 H 1.09000 * 113.61278 * 220.31428 * 16 15 14 46 46 H 1.09000 * 113.68554 * 89.43274 * 16 15 14 47 47 H 1.09009 * 113.63469 * 205.72946 * 17 14 8 48 48 H 1.08993 * 113.64039 * 336.61565 * 17 14 8 49 49 H 1.08997 * 109.47032 * 30.00495 * 20 19 2 50 50 H 1.09005 * 109.46805 * 150.00335 * 20 19 2 51 51 H 0.97001 * 119.99935 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6544 -0.0041 5 7 4.7738 1.4750 -0.0088 6 6 4.6371 2.8158 -0.0155 7 8 3.5324 3.3147 0.0801 8 7 5.7249 3.6035 -0.1281 9 6 7.0593 2.9604 -0.1756 10 6 7.9620 3.6468 -1.2234 11 7 7.1735 3.9836 -2.3886 12 6 6.7273 5.3707 -2.3093 13 6 5.4167 5.5556 -1.6483 14 6 5.5339 5.0342 -0.1906 15 6 6.5206 5.8548 0.6465 16 6 5.4982 5.7623 1.7929 17 6 4.4194 5.5760 0.7117 18 7 3.6337 -0.6576 0.0029 19 7 2.3016 -1.0909 0.0056 20 6 1.8500 -2.4846 0.0137 21 6 1.6959 -2.9545 1.4372 22 1 1.9124 -2.2821 2.2542 23 6 1.2787 -4.2428 1.6966 24 7 1.0147 -5.0612 0.7017 25 14 1.0884 -4.8255 3.4611 26 1 1.4443 -3.7213 4.3882 27 1 -0.3190 -5.2357 3.6978 28 1 1.9881 -5.9825 3.7001 29 1 -0.3633 0.0054 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3633 -0.8926 -0.5092 32 1 1.9722 2.1210 0.0004 33 1 5.6588 1.0777 -0.0074 34 1 7.5283 3.0345 0.8056 35 1 6.9414 1.9089 -0.4374 36 1 8.7653 2.9686 -1.5115 37 1 8.3881 4.5553 -0.7976 38 1 7.6938 3.8191 -3.2374 39 1 6.6640 5.7717 -3.3208 40 1 7.4751 5.9433 -1.7606 41 1 4.6525 4.9899 -2.1813 42 1 5.1534 6.6133 -1.6408 43 1 7.4565 5.3354 0.8526 44 1 6.6706 6.8687 0.2755 45 1 5.3930 6.6873 2.3597 46 1 5.6329 4.8884 2.4302 47 1 3.9880 6.5128 0.3587 48 1 3.6649 4.8325 0.9686 49 1 0.8911 -2.5587 -0.4992 50 1 2.5844 -3.1074 -0.4971 51 1 0.7215 -5.9677 0.8841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883550494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:34 Heat of formation + Delta-G solvation = 109.351019 kcal Electronic energy + Delta-G solvation = -31889.799485 eV Core-core repulsion = 27827.987272 eV Total energy + Delta-G solvation = -4061.812213 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.45409 -40.33778 -38.49675 -37.01472 -34.78215 -34.20758 -33.14123 -31.78670 -31.23114 -30.65712 -28.06564 -26.59801 -26.25994 -25.83499 -25.10962 -23.23240 -22.41790 -21.45807 -21.20958 -19.77921 -19.49086 -18.30863 -17.63554 -16.72714 -16.59267 -16.36039 -15.93289 -15.58748 -15.20849 -15.13908 -14.76337 -14.57905 -14.41769 -14.03142 -13.90311 -13.32225 -13.13242 -12.97844 -12.85343 -12.43008 -12.41704 -12.20559 -12.13547 -11.95554 -11.79811 -11.63153 -11.54835 -11.33058 -11.19700 -11.03272 -10.95990 -10.79410 -10.53673 -10.43452 -10.31510 -10.16124 -9.72067 -9.45045 -9.06845 -8.80234 -8.60663 -8.54430 -7.80333 -7.28691 -6.21109 -4.28298 2.43527 2.76228 3.19499 3.22919 3.30701 3.36324 3.43479 3.84924 3.94486 4.12318 4.33619 4.37285 4.51208 4.51435 4.59967 4.63211 4.83021 4.90332 5.12410 5.12756 5.14172 5.27203 5.35035 5.39904 5.48226 5.50837 5.54608 5.60450 5.69717 5.75420 5.80161 5.96577 6.02224 6.05953 6.18356 6.26711 6.28153 6.30718 6.53202 6.69626 6.73511 6.77060 6.93315 7.02039 7.05754 7.11419 7.18569 7.64963 7.72523 7.94589 8.02252 8.15923 8.75195 8.77302 8.83917 9.37773 10.85982 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.002482 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.292092 B =11279.996961 C =11446.568423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.089 3.911 3 C -0.288 4.288 4 C 0.285 3.715 5 N -0.645 5.645 6 C 0.718 3.282 7 O -0.559 6.559 8 N -0.585 5.585 9 C 0.114 3.886 10 C 0.046 3.954 11 N -0.679 5.679 12 C 0.064 3.936 13 C -0.120 4.120 14 C 0.179 3.821 15 C -0.141 4.141 16 C -0.141 4.141 17 C -0.158 4.158 18 N -0.327 5.327 19 N -0.320 5.320 20 C 0.259 3.741 21 C -0.533 4.533 22 H 0.065 0.935 23 C 0.064 3.936 24 N -0.893 5.893 25 Si 0.905 3.095 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.160 0.840 33 H 0.403 0.597 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.346 0.654 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.123 0.877 49 H 0.053 0.947 50 H 0.051 0.949 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.268 22.783 -4.530 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C -0.319 4.319 4 C 0.031 3.969 5 N -0.297 5.297 6 C 0.420 3.580 7 O -0.436 6.436 8 N -0.321 5.321 9 C -0.009 4.009 10 C -0.085 4.085 11 N -0.309 5.309 12 C -0.065 4.065 13 C -0.160 4.160 14 C 0.092 3.908 15 C -0.179 4.179 16 C -0.178 4.178 17 C -0.195 4.195 18 N -0.157 5.157 19 N -0.102 5.102 20 C 0.141 3.859 21 C -0.571 4.571 22 H 0.083 0.917 23 C -0.139 4.139 24 N -0.531 5.531 25 Si 0.732 3.268 26 H -0.196 1.196 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.241 0.759 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.165 0.835 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.083 0.917 46 H 0.094 0.906 47 H 0.100 0.900 48 H 0.141 0.859 49 H 0.071 0.929 50 H 0.069 0.931 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.552 21.546 -4.275 25.299 hybrid contribution 0.998 0.360 0.672 1.255 sum 13.550 21.906 -3.604 26.009 Atomic orbital electron populations 1.20317 0.88052 1.02698 1.03048 1.21041 0.94802 0.87238 1.01111 1.21217 0.89707 0.99726 1.21257 1.18694 0.86707 0.89242 1.02243 1.41740 1.07409 1.03918 1.76623 1.15604 0.84351 0.80293 0.77797 1.90685 1.24061 1.72343 1.56486 1.46177 1.04532 1.04378 1.77028 1.22191 0.83347 0.97027 0.98375 1.22275 0.94311 1.00081 0.91820 1.59064 1.43948 1.23556 1.04345 1.20841 0.97362 0.88085 1.00178 1.21518 0.97854 1.00665 0.95961 1.20761 0.97663 0.78792 0.93604 1.23195 0.97527 0.99955 0.97234 1.22853 0.96884 1.01590 0.96481 1.23679 0.98420 1.02504 0.94941 1.77235 0.99861 1.08430 1.30209 1.48921 1.00938 1.07648 1.52708 1.19651 0.95888 0.71507 0.98816 1.21380 1.46390 0.97889 0.91472 0.91720 1.24927 0.94769 0.96088 0.98068 1.69928 1.45201 1.06894 1.31060 0.86317 0.77829 0.78757 0.83879 1.19584 1.20674 1.20707 0.90537 0.90904 0.90984 0.82282 0.75944 0.91582 0.90170 0.90434 0.93214 0.83530 0.92353 0.94711 0.90629 0.90504 0.91478 0.89353 0.91718 0.90594 0.90027 0.85912 0.92892 0.93117 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 10.11 36.01 0.36 -1.10 16 2 C 0.09 1.95 6.92 -82.28 -0.57 1.38 16 3 C -0.29 -6.14 9.52 -39.83 -0.38 -6.52 16 4 C 0.28 6.04 8.11 -154.37 -1.25 4.79 16 5 N -0.64 -10.85 5.30 -15.51 -0.08 -10.93 16 6 C 0.72 11.35 8.00 -86.92 -0.70 10.66 16 7 O -0.56 -10.20 10.21 5.28 0.05 -10.15 16 8 N -0.59 -6.82 2.48 -162.00 -0.40 -7.22 16 9 C 0.11 1.00 5.63 -2.37 -0.01 0.99 16 10 C 0.05 0.31 6.06 -4.28 -0.03 0.28 16 11 N -0.68 -5.35 6.27 -118.07 -0.74 -6.09 16 12 C 0.06 0.49 5.61 -6.80 -0.04 0.45 16 13 C -0.12 -1.14 5.33 -27.98 -0.15 -1.29 16 14 C 0.18 1.84 0.40 -131.44 -0.05 1.79 16 15 C -0.14 -1.13 5.71 -26.16 -0.15 -1.28 16 16 C -0.14 -1.35 8.05 -25.82 -0.21 -1.56 16 17 C -0.16 -1.80 6.71 -26.13 -0.18 -1.97 16 18 N -0.33 -7.78 12.59 31.44 0.40 -7.38 16 19 N -0.32 -7.79 3.59 -58.32 -0.21 -8.00 16 20 C 0.26 6.79 5.99 -5.19 -0.03 6.76 16 21 C -0.53 -14.93 9.39 -34.44 -0.32 -15.25 16 22 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 23 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 24 N -0.89 -25.39 13.28 55.43 0.74 -24.65 16 25 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 29 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 32 H 0.16 3.32 5.93 -52.49 -0.31 3.01 16 33 H 0.40 5.74 6.20 -40.82 -0.25 5.49 16 34 H 0.07 0.49 7.98 -51.93 -0.41 0.08 16 35 H 0.08 0.72 5.64 -51.93 -0.29 0.43 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.05 0.30 5.64 -51.93 -0.29 0.01 16 38 H 0.35 2.14 8.88 -39.29 -0.35 1.79 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.03 0.23 6.24 -51.93 -0.32 -0.09 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.08 0.60 7.99 -51.93 -0.41 0.18 16 43 H 0.07 0.50 6.16 -51.93 -0.32 0.18 16 44 H 0.09 0.59 8.06 -51.93 -0.42 0.17 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.08 0.82 7.95 -51.92 -0.41 0.40 16 48 H 0.12 1.84 4.97 -52.41 -0.26 1.58 16 49 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 50 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 51 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -32.87 388.60 -10.93 -43.80 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.72 Total: 8.62 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -3.80 Total: -0.21 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: -0.30 Total: -64.29 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.05 Total: -10.15 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.87 -10.93 -43.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883550494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.150 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds