Wall clock time and date at job start Wed Apr 1 2020 04:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35243 * 126.06995 * 2 1 4 4 C 1.40410 * 107.86219 * 180.17577 * 3 2 1 5 5 N 1.40194 * 125.96625 * 179.82881 * 4 3 2 6 6 C 1.34777 * 120.00534 * 359.71904 * 5 4 3 7 7 O 1.21592 * 119.99772 * 5.31054 * 6 5 4 8 8 N 1.34770 * 119.99878 * 185.31365 * 6 5 4 9 9 C 1.48207 * 118.40875 * 357.05009 * 8 6 5 10 10 C 1.54401 * 110.81009 * 138.88386 * 9 8 6 11 11 N 1.44674 * 109.35261 * 320.82112 * 10 9 8 12 12 C 1.45921 * 110.12917 * 96.02007 * 11 10 9 13 13 C 1.47952 * 114.45471 * 269.35180 * 12 11 10 14 14 C 1.44477 * 118.40547 * 177.32369 * 8 6 5 15 15 C 1.53222 * 114.93544 * 137.34129 * 14 8 6 16 16 C 1.53882 * 86.95778 * 268.83352 * 15 14 8 17 17 C 1.53285 * 114.87444 * 37.91522 * 14 8 6 18 18 N 1.31203 * 108.05586 * 359.56887 * 4 3 2 19 19 N 1.34961 * 126.06651 * 179.70671 * 2 1 3 20 20 C 1.46503 * 125.97762 * 359.95361 * 19 2 1 21 21 C 1.50700 * 109.47196 * 270.00386 * 20 19 2 22 22 H 1.07999 * 120.00183 * 0.02562 * 21 20 19 23 23 C 1.37883 * 119.99605 * 180.02562 * 21 20 19 24 24 N 1.31503 * 119.99952 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99642 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47155 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.46599 * 119.99894 * 25 23 21 28 28 H 1.48501 * 109.47081 * 239.99993 * 25 23 21 29 29 H 1.08999 * 109.47143 * 270.30016 * 1 2 3 30 30 H 1.09003 * 109.46980 * 30.29154 * 1 2 3 31 31 H 1.08998 * 109.47226 * 150.29596 * 1 2 3 32 32 H 1.07992 * 126.07131 * 0.02562 * 3 2 1 33 33 H 0.97008 * 119.99613 * 179.72131 * 5 4 3 34 34 H 1.09006 * 109.20887 * 259.22491 * 9 8 6 35 35 H 1.09000 * 109.20543 * 18.53768 * 9 8 6 36 36 H 1.08999 * 109.48755 * 200.86089 * 10 9 8 37 37 H 1.09005 * 109.51373 * 80.79760 * 10 9 8 38 38 H 1.00900 * 111.00737 * 219.35721 * 11 10 9 39 39 H 1.08998 * 108.48651 * 148.06398 * 12 11 10 40 40 H 1.09005 * 108.48094 * 30.64064 * 12 11 10 41 41 H 1.08994 * 109.73971 * 301.32453 * 13 12 11 42 42 H 1.08993 * 109.77728 * 180.64150 * 13 12 11 43 43 H 1.09001 * 113.64078 * 23.35292 * 15 14 8 44 44 H 1.09003 * 113.63207 * 154.31640 * 15 14 8 45 45 H 1.09000 * 113.61278 * 220.31428 * 16 15 14 46 46 H 1.09000 * 113.68554 * 89.43274 * 16 15 14 47 47 H 1.09009 * 113.63469 * 205.72946 * 17 14 8 48 48 H 1.08993 * 113.64039 * 336.61565 * 17 14 8 49 49 H 1.08997 * 109.47032 * 30.00495 * 20 19 2 50 50 H 1.09005 * 109.46805 * 150.00335 * 20 19 2 51 51 H 0.97001 * 119.99935 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6544 -0.0041 5 7 4.7738 1.4750 -0.0088 6 6 4.6371 2.8158 -0.0155 7 8 3.5324 3.3147 0.0801 8 7 5.7249 3.6035 -0.1281 9 6 7.0593 2.9604 -0.1756 10 6 7.9620 3.6468 -1.2234 11 7 7.1735 3.9836 -2.3886 12 6 6.7273 5.3707 -2.3093 13 6 5.4167 5.5556 -1.6483 14 6 5.5339 5.0342 -0.1906 15 6 6.5206 5.8548 0.6465 16 6 5.4982 5.7623 1.7929 17 6 4.4194 5.5760 0.7117 18 7 3.6337 -0.6576 0.0029 19 7 2.3016 -1.0909 0.0056 20 6 1.8500 -2.4846 0.0137 21 6 1.6959 -2.9545 1.4372 22 1 1.9124 -2.2821 2.2542 23 6 1.2787 -4.2428 1.6966 24 7 1.0147 -5.0612 0.7017 25 14 1.0884 -4.8255 3.4611 26 1 1.4443 -3.7213 4.3882 27 1 -0.3190 -5.2357 3.6978 28 1 1.9881 -5.9825 3.7001 29 1 -0.3633 0.0054 1.0276 30 1 -0.3633 0.8874 -0.5184 31 1 -0.3633 -0.8926 -0.5092 32 1 1.9722 2.1210 0.0004 33 1 5.6588 1.0777 -0.0074 34 1 7.5283 3.0345 0.8056 35 1 6.9414 1.9089 -0.4374 36 1 8.7653 2.9686 -1.5115 37 1 8.3881 4.5553 -0.7976 38 1 7.6938 3.8191 -3.2374 39 1 6.6640 5.7717 -3.3208 40 1 7.4751 5.9433 -1.7606 41 1 4.6525 4.9899 -2.1813 42 1 5.1534 6.6133 -1.6408 43 1 7.4565 5.3354 0.8526 44 1 6.6706 6.8687 0.2755 45 1 5.3930 6.6873 2.3597 46 1 5.6329 4.8884 2.4302 47 1 3.9880 6.5128 0.3587 48 1 3.6649 4.8325 0.9686 49 1 0.8911 -2.5587 -0.4992 50 1 2.5844 -3.1074 -0.4971 51 1 0.7215 -5.9677 0.8841 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883550494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:32 Heat of formation + Delta-G solvation = 88.008524 kcal Electronic energy + Delta-G solvation = -31890.724965 eV Core-core repulsion = 27827.987272 eV Total energy + Delta-G solvation = -4062.737693 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.55588 -41.86772 -39.64518 -37.69273 -36.20188 -35.57670 -34.83044 -32.82260 -32.57663 -32.42469 -28.93635 -28.42179 -27.84794 -26.61693 -25.95682 -24.98420 -23.59851 -22.48809 -21.89500 -21.24396 -20.91991 -19.53531 -18.78972 -18.57036 -17.65772 -17.48950 -17.17435 -16.84712 -16.55421 -16.16667 -15.91383 -15.80797 -15.52560 -15.43611 -15.16278 -14.71161 -14.32648 -13.97580 -13.93569 -13.82620 -13.66798 -13.56982 -13.50027 -13.16605 -13.08157 -12.85314 -12.67035 -12.61034 -12.47396 -12.27328 -12.23924 -12.11811 -11.92457 -11.73634 -11.48252 -11.32842 -11.28283 -11.16137 -10.73205 -10.26213 -9.59957 -9.45413 -9.34772 -8.98818 -8.31555 -6.49582 1.04761 1.18690 1.36963 1.38347 1.51509 1.71347 2.03577 2.35110 2.44797 2.77373 2.97300 3.32781 3.57634 3.73750 3.84280 3.87851 3.94535 4.02858 4.05808 4.18817 4.27813 4.45373 4.49034 4.59782 4.70127 4.70753 4.72636 4.73266 4.80873 4.85143 4.87286 4.90530 4.92793 4.98092 5.03014 5.06641 5.07219 5.13606 5.20135 5.20711 5.30908 5.50708 5.52930 5.55614 5.76696 5.82526 6.00484 6.04783 6.21401 6.29938 6.57675 6.62943 6.71416 7.14311 7.21315 7.53066 8.74085 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018389 B = 0.002482 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.292092 B =11279.996961 C =11446.568423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.086 3.914 3 C -0.297 4.297 4 C 0.294 3.706 5 N -0.640 5.640 6 C 0.708 3.292 7 O -0.588 6.588 8 N -0.573 5.573 9 C 0.102 3.898 10 C 0.052 3.948 11 N -0.700 5.700 12 C 0.065 3.935 13 C -0.116 4.116 14 C 0.167 3.833 15 C -0.119 4.119 16 C -0.139 4.139 17 C -0.168 4.168 18 N -0.363 5.363 19 N -0.344 5.344 20 C 0.276 3.724 21 C -0.551 4.551 22 H 0.048 0.952 23 C 0.023 3.977 24 N -0.918 5.918 25 Si 0.972 3.028 26 H -0.275 1.275 27 H -0.266 1.266 28 H -0.273 1.273 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.069 0.931 32 H 0.164 0.836 33 H 0.414 0.586 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.356 0.644 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.037 0.963 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.113 0.887 45 H 0.079 0.921 46 H 0.058 0.942 47 H 0.093 0.907 48 H 0.083 0.917 49 H 0.052 0.948 50 H 0.024 0.976 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.953 24.741 -4.005 29.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.044 4.044 3 C -0.328 4.328 4 C 0.039 3.961 5 N -0.294 5.294 6 C 0.410 3.590 7 O -0.466 6.466 8 N -0.307 5.307 9 C -0.020 4.020 10 C -0.079 4.079 11 N -0.332 5.332 12 C -0.064 4.064 13 C -0.155 4.155 14 C 0.080 3.920 15 C -0.157 4.157 16 C -0.176 4.176 17 C -0.206 4.206 18 N -0.194 5.194 19 N -0.126 5.126 20 C 0.157 3.843 21 C -0.590 4.590 22 H 0.066 0.934 23 C -0.178 4.178 24 N -0.557 5.557 25 Si 0.796 3.204 26 H -0.199 1.199 27 H -0.191 1.191 28 H -0.199 1.199 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.182 0.818 33 H 0.254 0.746 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.083 0.917 38 H 0.176 0.824 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.113 0.887 43 H 0.098 0.902 44 H 0.131 0.869 45 H 0.098 0.902 46 H 0.076 0.924 47 H 0.112 0.888 48 H 0.101 0.899 49 H 0.069 0.931 50 H 0.042 0.958 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.292 23.541 -3.774 27.797 hybrid contribution 0.490 -0.134 0.471 0.693 sum 14.782 23.407 -3.302 27.880 Atomic orbital electron populations 1.20451 0.85409 1.04111 1.03868 1.21718 0.96589 0.86483 0.99621 1.21371 0.89951 0.99772 1.21677 1.18990 0.88182 0.88917 1.00001 1.41808 1.06747 1.04153 1.76695 1.15901 0.85211 0.79991 0.77887 1.90683 1.25663 1.72640 1.57650 1.46302 1.04463 1.04683 1.75288 1.22537 0.82230 0.96842 1.00435 1.22277 0.93870 1.00972 0.90756 1.58991 1.44848 1.24014 1.05331 1.20813 0.96534 0.88284 1.00788 1.21513 0.98045 1.01046 0.94930 1.21043 0.98357 0.78087 0.94481 1.23140 0.96875 1.00731 0.94965 1.22802 0.96745 1.01538 0.96518 1.23654 0.98246 1.02047 0.96646 1.77153 1.00028 1.09753 1.32446 1.48737 1.01666 1.07420 1.54826 1.19228 0.94846 0.72466 0.97751 1.21464 1.47391 0.98350 0.91747 0.93382 1.25733 0.93952 0.95866 1.02288 1.70006 1.45204 1.07386 1.33070 0.85300 0.78509 0.78060 0.78546 1.19949 1.19135 1.19880 0.89886 0.87718 0.91259 0.81824 0.74639 0.89781 0.90860 0.88386 0.91666 0.82390 0.91479 0.92731 0.94411 0.88668 0.90206 0.86856 0.90214 0.92364 0.88838 0.89857 0.93066 0.95832 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.84 10.11 71.24 0.72 -2.12 16 2 C 0.09 3.84 6.92 41.39 0.29 4.13 16 3 C -0.30 -13.02 9.52 22.11 0.21 -12.81 16 4 C 0.29 12.90 8.11 133.32 1.08 13.98 16 5 N -0.64 -22.06 5.30 -321.23 -1.70 -23.76 16 6 C 0.71 22.84 8.00 179.06 1.43 24.28 16 7 O -0.59 -22.27 10.21 -4.00 -0.04 -22.31 16 8 N -0.57 -12.92 2.48 -784.71 -1.95 -14.87 16 9 C 0.10 1.60 5.63 86.53 0.49 2.09 16 10 C 0.05 0.53 6.06 87.20 0.53 1.06 16 11 N -0.70 -9.42 6.27 -527.47 -3.31 -12.72 16 12 C 0.06 0.80 5.61 84.90 0.48 1.27 16 13 C -0.12 -2.01 5.33 29.79 0.16 -1.85 16 14 C 0.17 3.18 0.40 4.93 0.00 3.18 16 15 C -0.12 -1.51 5.71 30.97 0.18 -1.34 16 16 C -0.14 -2.43 8.05 31.19 0.25 -2.17 16 17 C -0.17 -3.76 6.71 30.98 0.21 -3.56 16 18 N -0.36 -17.97 12.59 -54.43 -0.69 -18.66 16 19 N -0.34 -17.43 3.59 -338.43 -1.22 -18.64 16 20 C 0.28 15.07 5.99 85.63 0.51 15.59 16 21 C -0.55 -31.73 9.39 25.60 0.24 -31.49 16 22 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 23 C 0.02 1.25 5.46 84.66 0.46 1.71 16 24 N -0.92 -52.68 13.28 21.45 0.28 -52.39 16 25 Si 0.97 43.90 29.54 68.60 2.03 45.92 16 26 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 29 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 31 H 0.07 2.48 7.07 -2.39 -0.02 2.46 16 32 H 0.16 7.03 5.93 -2.91 -0.02 7.01 16 33 H 0.41 12.00 6.20 -92.70 -0.58 11.43 16 34 H 0.08 1.04 7.98 -2.38 -0.02 1.02 16 35 H 0.07 1.25 5.64 -2.39 -0.01 1.23 16 36 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.49 5.64 -2.38 -0.01 0.48 16 38 H 0.36 3.56 8.88 -89.69 -0.80 2.76 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.05 0.48 6.24 -2.38 -0.01 0.46 16 41 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.10 1.26 7.99 -2.39 -0.02 1.24 16 43 H 0.08 0.86 6.16 -2.39 -0.01 0.84 16 44 H 0.11 0.95 8.06 -2.39 -0.02 0.94 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.09 1.79 7.95 -2.38 -0.02 1.77 16 48 H 0.08 2.61 4.97 -9.93 -0.05 2.57 16 49 H 0.05 2.77 7.04 -2.39 -0.02 2.75 16 50 H 0.02 1.39 8.14 -2.38 -0.02 1.37 16 51 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -74.05 388.60 0.21 -73.84 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: -0.43 Total: 31.64 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: 7.24 Total: 11.95 kcal Atomic # 7 Polarization: -132.47 SS G_CDS: -8.58 Total: -141.04 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.04 Total: -22.31 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -74.05 0.21 -73.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883550494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.846 kcal (2) G-P(sol) polarization free energy of solvation -74.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds