Wall clock time and date at job start Wed Apr 1 2020 04:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38881 * 120.33276 * 2 1 4 4 C 1.38297 * 118.50800 * 180.02562 * 3 2 1 5 5 C 1.39135 * 119.09329 * 0.02562 * 4 3 2 6 6 N 1.39007 * 119.70647 * 179.97438 * 5 4 3 7 7 C 1.46502 * 119.99747 * 0.02562 * 6 5 4 8 8 C 1.52997 * 109.46666 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46666 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99695 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00266 * 0.02562 * 10 9 8 12 12 N 1.34787 * 119.99709 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99617 * 180.02562 * 12 10 9 14 14 C 1.53041 * 109.46106 * 275.02257 * 13 12 10 15 15 C 1.53184 * 109.31477 * 178.60409 * 14 13 12 16 16 N 1.46923 * 108.76776 * 54.65628 * 15 14 13 17 17 C 1.36937 * 120.63227 * 126.40028 * 16 15 14 18 18 H 1.07999 * 120.00108 * 331.82804 * 17 16 15 19 19 C 1.38816 * 119.99805 * 151.82354 * 17 16 15 20 20 N 1.31614 * 120.00282 * 343.08446 * 19 17 16 21 21 Si 1.86799 * 119.99733 * 163.08256 * 19 17 16 22 22 H 1.48508 * 109.47283 * 60.00300 * 21 19 17 23 23 H 1.48504 * 109.46938 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47447 * 300.00177 * 21 19 17 25 25 C 1.46921 * 118.73928 * 306.38492 * 16 15 14 26 26 C 1.53044 * 109.46077 * 154.97198 * 13 12 10 27 27 N 1.32400 * 120.58975 * 0.02562 * 5 4 3 28 28 C 1.31973 * 121.62582 * 0.02562 * 27 5 4 29 29 H 1.08998 * 109.47042 * 90.00184 * 1 2 3 30 30 H 1.09001 * 109.46992 * 209.99854 * 1 2 3 31 31 H 1.09002 * 109.47550 * 330.00071 * 1 2 3 32 32 H 1.08002 * 120.74602 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.45354 * 179.72452 * 4 3 2 34 34 H 0.97002 * 119.99794 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.46631 * 299.99683 * 7 6 5 36 36 H 1.08993 * 109.47187 * 59.99487 * 7 6 5 37 37 H 1.09000 * 109.47484 * 299.99341 * 8 7 6 38 38 H 1.08993 * 109.47589 * 59.99913 * 8 7 6 39 39 H 0.97002 * 120.00459 * 359.97438 * 9 8 7 40 40 H 0.96995 * 119.99721 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.46706 * 34.99770 * 13 12 10 42 42 H 1.09008 * 109.49886 * 298.57271 * 14 13 12 43 43 H 1.09007 * 109.49680 * 58.66115 * 14 13 12 44 44 H 1.09001 * 109.60208 * 294.86863 * 15 14 13 45 45 H 1.09007 * 109.70260 * 174.50523 * 15 14 13 46 46 H 0.96996 * 120.00125 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.58636 * 293.82402 * 25 16 15 48 48 H 1.08994 * 109.70630 * 173.46050 * 25 16 15 49 49 H 1.09001 * 109.49458 * 301.33302 * 26 13 12 50 50 H 1.09001 * 109.49614 * 61.42434 * 26 13 12 51 51 H 1.07998 * 119.57513 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1987 0.0000 4 6 3.5907 1.1547 -0.0005 5 6 4.2282 -0.0821 -0.0016 6 7 5.6170 -0.1412 -0.0027 7 6 6.4027 1.0953 -0.0022 8 6 7.8937 0.7519 -0.0030 9 7 8.6794 1.9884 -0.0030 10 6 10.0260 1.9310 -0.0032 11 8 10.5886 0.8532 -0.0037 12 7 10.7489 3.0686 -0.0038 13 6 12.2126 3.0063 -0.0045 14 6 12.7173 2.8587 1.4328 15 6 14.2459 2.7588 1.4252 16 7 14.7920 3.9205 0.7105 17 6 15.7356 4.7205 1.2977 18 1 15.7682 4.8174 2.3728 19 6 16.6504 5.4070 0.5109 20 7 16.8392 5.0503 -0.7419 21 14 17.6132 6.8369 1.2302 22 1 18.4182 6.3612 2.3840 23 1 18.5166 7.3969 0.1931 24 1 16.6701 7.8898 1.6853 25 6 14.3067 4.2074 -0.6462 26 6 12.7773 4.2908 -0.6155 27 7 3.5238 -1.2031 -0.0026 28 6 2.2041 -1.1913 -0.0031 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6861 2.1440 0.0004 33 1 4.1674 2.0678 -0.0050 34 1 6.0658 -1.0012 -0.0031 35 1 6.1632 1.6782 -0.8915 36 1 6.1646 1.6767 0.8884 37 1 8.1328 0.1691 0.8866 38 1 8.1322 0.1703 -0.8933 39 1 8.2306 2.8483 -0.0030 40 1 10.3000 3.9285 -0.0045 41 1 12.5394 2.1496 -0.5938 42 1 12.4121 3.7272 2.0166 43 1 12.2960 1.9560 1.8754 44 1 14.5499 1.8425 0.9191 45 1 14.6188 2.7515 2.4495 46 1 17.4787 5.5298 -1.2915 47 1 14.6155 3.4093 -1.3212 48 1 14.7174 5.1565 -0.9904 49 1 12.3989 4.4075 -1.6310 50 1 12.4715 5.1456 -0.0123 51 1 1.6626 -2.1257 -0.0035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917311981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:50 Heat of formation + Delta-G solvation = 26.869625 kcal Electronic energy + Delta-G solvation = -28985.941333 eV Core-core repulsion = 24920.552458 eV Total energy + Delta-G solvation = -4065.388875 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.65597 -40.03146 -37.72997 -36.94958 -34.83107 -34.35383 -33.35802 -32.16411 -31.61381 -30.20071 -29.63141 -28.69547 -26.29039 -24.96321 -24.33915 -23.03303 -22.25932 -21.89463 -21.77405 -20.65335 -19.45755 -18.33348 -18.09799 -17.10747 -16.76559 -16.22167 -16.13539 -15.46121 -15.07506 -15.04475 -14.77619 -14.67780 -14.43007 -14.18024 -14.09475 -13.71446 -13.54933 -13.40845 -13.37489 -12.98651 -12.82734 -12.72970 -12.34700 -12.24996 -12.21953 -11.98412 -11.45483 -11.11318 -10.86168 -10.71689 -10.50802 -10.44727 -10.28241 -10.11152 -10.10847 -10.03355 -9.79790 -9.76152 -9.55237 -9.30051 -8.63684 -8.44395 -8.04044 -6.68292 -5.79694 -3.21864 0.90794 1.05400 2.30453 3.06520 3.30075 3.38111 3.43812 3.44855 3.52294 4.17467 4.27175 4.31734 4.45369 4.49392 4.58941 4.62536 4.69857 4.78175 4.88173 5.13033 5.20246 5.33258 5.38767 5.42604 5.44243 5.45895 5.50863 5.53766 5.61196 5.64478 5.89143 5.93987 6.08204 6.16666 6.26088 6.28623 6.34707 6.48121 6.57178 6.58031 6.60500 6.80041 6.85708 6.98104 7.06699 7.12781 7.31754 7.61645 7.78930 7.79682 8.07142 8.44593 8.68283 9.20777 9.83980 10.41192 11.29278 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.038207 B = 0.001358 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.677734 B =20616.012535 C =20893.157898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.204 4.204 3 C -0.034 4.034 4 C -0.235 4.235 5 C 0.401 3.599 6 N -0.722 5.722 7 C 0.119 3.881 8 C 0.131 3.869 9 N -0.750 5.750 10 C 0.703 3.297 11 O -0.588 6.588 12 N -0.737 5.737 13 C 0.168 3.832 14 C -0.139 4.139 15 C 0.147 3.853 16 N -0.592 5.592 17 C -0.254 4.254 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.175 3.825 26 C -0.146 4.146 27 N -0.542 5.542 28 C 0.150 3.850 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.408 0.592 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.395 0.605 40 H 0.391 0.609 41 H 0.082 0.918 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.021 0.979 45 H 0.056 0.944 46 H 0.255 0.745 47 H 0.021 0.979 48 H 0.091 0.909 49 H 0.054 0.946 50 H 0.059 0.941 51 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.994 -5.971 -0.051 32.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.208 4.208 3 C -0.059 4.059 4 C -0.260 4.260 5 C 0.165 3.835 6 N -0.356 5.356 7 C -0.006 4.006 8 C 0.006 3.994 9 N -0.408 5.408 10 C 0.403 3.597 11 O -0.465 6.465 12 N -0.391 5.391 13 C 0.065 3.935 14 C -0.180 4.180 15 C 0.020 3.980 16 N -0.315 5.315 17 C -0.383 4.383 18 H 0.083 0.917 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.211 1.211 25 C 0.048 3.952 26 C -0.186 4.186 27 N -0.258 5.258 28 C -0.008 4.008 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.244 0.756 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.229 0.771 40 H 0.224 0.776 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.039 0.961 48 H 0.110 0.890 49 H 0.072 0.928 50 H 0.078 0.922 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -30.737 -7.516 -0.173 31.643 hybrid contribution -0.199 2.066 0.311 2.099 sum -30.936 -5.450 0.138 31.413 Atomic orbital electron populations 1.20571 0.90471 1.02633 1.02058 1.20613 0.97401 0.94035 1.08790 1.21230 0.93228 0.98062 0.93429 1.21404 0.95393 0.97296 1.11918 1.18278 0.85016 0.89387 0.90813 1.44172 1.01638 1.08849 1.80945 1.21445 0.90090 0.86880 1.02208 1.21099 0.87907 0.87015 1.03427 1.44853 1.05048 1.08826 1.82072 1.15945 0.80837 0.85068 0.77836 1.90938 1.70203 1.27793 1.57599 1.45542 1.07940 1.06538 1.79046 1.20932 0.75532 0.99732 0.97333 1.22394 0.99069 1.00654 0.95860 1.20879 0.90055 0.90432 0.96611 1.44079 1.45388 1.27553 1.14496 1.19159 1.07054 1.20564 0.91559 0.91692 1.25045 0.97065 1.00846 0.96600 1.70011 1.36678 1.40521 1.07564 0.86369 0.79534 0.82757 0.78092 1.20869 1.21636 1.21077 1.20733 0.86379 1.01731 0.86332 1.22551 1.01396 0.95675 0.99002 1.67139 1.08780 1.29481 1.20444 1.22296 0.88258 0.97516 0.92748 0.91590 0.91633 0.91812 0.85075 0.85117 0.75574 0.91179 0.91180 0.90851 0.90868 0.77107 0.77570 0.90038 0.92449 0.92718 0.96152 0.92583 0.93545 0.96088 0.89050 0.92767 0.92216 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.41 10.03 36.01 0.36 -0.05 16 2 C -0.20 -1.36 5.90 -104.46 -0.62 -1.97 16 3 C -0.03 -0.22 9.85 -39.32 -0.39 -0.61 16 4 C -0.24 -1.75 9.33 -39.23 -0.37 -2.11 16 5 C 0.40 3.61 7.65 -155.02 -1.19 2.43 16 6 N -0.72 -5.48 5.73 -60.42 -0.35 -5.83 16 7 C 0.12 0.70 5.01 -4.04 -0.02 0.68 16 8 C 0.13 1.08 5.79 -4.04 -0.02 1.06 16 9 N -0.75 -6.95 5.56 -65.23 -0.36 -7.32 16 10 C 0.70 9.99 8.53 -86.91 -0.74 9.25 16 11 O -0.59 -11.06 16.00 5.29 0.08 -10.98 16 12 N -0.74 -9.97 5.08 -58.63 -0.30 -10.26 16 13 C 0.17 2.91 2.42 -67.89 -0.16 2.74 16 14 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 15 C 0.15 3.18 6.52 -3.72 -0.02 3.16 16 16 N -0.59 -14.75 2.99 -172.33 -0.52 -15.26 16 17 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 18 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 19 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 20 N -0.90 -25.94 11.19 55.49 0.62 -25.32 16 21 Si 0.90 21.43 29.59 -169.99 -5.03 16.40 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 26 C -0.15 -2.63 5.55 -26.61 -0.15 -2.78 16 27 N -0.54 -5.40 10.39 -12.44 -0.13 -5.53 16 28 C 0.15 1.18 10.85 -17.57 -0.19 0.99 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.21 8.09 -51.93 -0.42 -0.21 16 31 H 0.06 0.22 8.09 -51.93 -0.42 -0.20 16 32 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.13 0.73 6.71 -52.49 -0.35 0.38 16 34 H 0.41 3.07 8.60 -40.82 -0.35 2.72 16 35 H 0.07 0.36 7.92 -51.93 -0.41 -0.05 16 36 H 0.07 0.36 7.93 -51.93 -0.41 -0.05 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.40 2.38 8.49 -40.82 -0.35 2.04 16 40 H 0.39 4.07 8.62 -40.82 -0.35 3.72 16 41 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 42 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 43 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 2.36 6.07 -51.93 -0.31 2.05 16 49 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 412.33 15.07 6.21 6.21 Total: -1.00 -34.08 412.33 -12.05 -46.13 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.38 Total: 4.68 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -3.91 Total: 7.07 kcal Atomic # 7 Polarization: -68.48 SS G_CDS: -1.03 Total: -69.51 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.08 -12.05 -46.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917311981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.996 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds