Wall clock time and date at job start Wed Apr 1 2020 04:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38881 * 120.33276 * 2 1 4 4 C 1.38297 * 118.50800 * 180.02562 * 3 2 1 5 5 C 1.39135 * 119.09329 * 0.02562 * 4 3 2 6 6 N 1.39007 * 119.70647 * 179.97438 * 5 4 3 7 7 C 1.46502 * 119.99747 * 0.02562 * 6 5 4 8 8 C 1.52997 * 109.46666 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46666 * 179.97438 * 8 7 6 10 10 C 1.34779 * 119.99695 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00266 * 0.02562 * 10 9 8 12 12 N 1.34787 * 119.99709 * 179.97438 * 10 9 8 13 13 C 1.46496 * 119.99617 * 180.02562 * 12 10 9 14 14 C 1.53041 * 109.46106 * 275.02257 * 13 12 10 15 15 C 1.53184 * 109.31477 * 178.60409 * 14 13 12 16 16 N 1.46923 * 108.76776 * 54.65628 * 15 14 13 17 17 C 1.36937 * 120.63227 * 126.40028 * 16 15 14 18 18 H 1.07999 * 120.00108 * 331.82804 * 17 16 15 19 19 C 1.38816 * 119.99805 * 151.82354 * 17 16 15 20 20 N 1.31614 * 120.00282 * 343.08446 * 19 17 16 21 21 Si 1.86799 * 119.99733 * 163.08256 * 19 17 16 22 22 H 1.48508 * 109.47283 * 60.00300 * 21 19 17 23 23 H 1.48504 * 109.46938 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47447 * 300.00177 * 21 19 17 25 25 C 1.46921 * 118.73928 * 306.38492 * 16 15 14 26 26 C 1.53044 * 109.46077 * 154.97198 * 13 12 10 27 27 N 1.32400 * 120.58975 * 0.02562 * 5 4 3 28 28 C 1.31973 * 121.62582 * 0.02562 * 27 5 4 29 29 H 1.08998 * 109.47042 * 90.00184 * 1 2 3 30 30 H 1.09001 * 109.46992 * 209.99854 * 1 2 3 31 31 H 1.09002 * 109.47550 * 330.00071 * 1 2 3 32 32 H 1.08002 * 120.74602 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.45354 * 179.72452 * 4 3 2 34 34 H 0.97002 * 119.99794 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.46631 * 299.99683 * 7 6 5 36 36 H 1.08993 * 109.47187 * 59.99487 * 7 6 5 37 37 H 1.09000 * 109.47484 * 299.99341 * 8 7 6 38 38 H 1.08993 * 109.47589 * 59.99913 * 8 7 6 39 39 H 0.97002 * 120.00459 * 359.97438 * 9 8 7 40 40 H 0.96995 * 119.99721 * 359.97438 * 12 10 9 41 41 H 1.08996 * 109.46706 * 34.99770 * 13 12 10 42 42 H 1.09008 * 109.49886 * 298.57271 * 14 13 12 43 43 H 1.09007 * 109.49680 * 58.66115 * 14 13 12 44 44 H 1.09001 * 109.60208 * 294.86863 * 15 14 13 45 45 H 1.09007 * 109.70260 * 174.50523 * 15 14 13 46 46 H 0.96996 * 120.00125 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.58636 * 293.82402 * 25 16 15 48 48 H 1.08994 * 109.70630 * 173.46050 * 25 16 15 49 49 H 1.09001 * 109.49458 * 301.33302 * 26 13 12 50 50 H 1.09001 * 109.49614 * 61.42434 * 26 13 12 51 51 H 1.07998 * 119.57513 * 180.02562 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2084 1.1987 0.0000 4 6 3.5907 1.1547 -0.0005 5 6 4.2282 -0.0821 -0.0016 6 7 5.6170 -0.1412 -0.0027 7 6 6.4027 1.0953 -0.0022 8 6 7.8937 0.7519 -0.0030 9 7 8.6794 1.9884 -0.0030 10 6 10.0260 1.9310 -0.0032 11 8 10.5886 0.8532 -0.0037 12 7 10.7489 3.0686 -0.0038 13 6 12.2126 3.0063 -0.0045 14 6 12.7173 2.8587 1.4328 15 6 14.2459 2.7588 1.4252 16 7 14.7920 3.9205 0.7105 17 6 15.7356 4.7205 1.2977 18 1 15.7682 4.8174 2.3728 19 6 16.6504 5.4070 0.5109 20 7 16.8392 5.0503 -0.7419 21 14 17.6132 6.8369 1.2302 22 1 18.4182 6.3612 2.3840 23 1 18.5166 7.3969 0.1931 24 1 16.6701 7.8898 1.6853 25 6 14.3067 4.2074 -0.6462 26 6 12.7773 4.2908 -0.6155 27 7 3.5238 -1.2031 -0.0026 28 6 2.2041 -1.1913 -0.0031 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.6861 2.1440 0.0004 33 1 4.1674 2.0678 -0.0050 34 1 6.0658 -1.0012 -0.0031 35 1 6.1632 1.6782 -0.8915 36 1 6.1646 1.6767 0.8884 37 1 8.1328 0.1691 0.8866 38 1 8.1322 0.1703 -0.8933 39 1 8.2306 2.8483 -0.0030 40 1 10.3000 3.9285 -0.0045 41 1 12.5394 2.1496 -0.5938 42 1 12.4121 3.7272 2.0166 43 1 12.2960 1.9560 1.8754 44 1 14.5499 1.8425 0.9191 45 1 14.6188 2.7515 2.4495 46 1 17.4787 5.5298 -1.2915 47 1 14.6155 3.4093 -1.3212 48 1 14.7174 5.1565 -0.9904 49 1 12.3989 4.4075 -1.6310 50 1 12.4715 5.1456 -0.0123 51 1 1.6626 -2.1257 -0.0035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917311981.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:49 Heat of formation + Delta-G solvation = 3.167083 kcal Electronic energy + Delta-G solvation = -28986.969152 eV Core-core repulsion = 24920.552458 eV Total energy + Delta-G solvation = -4066.416694 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.28707 -41.08792 -39.17735 -37.72618 -36.02199 -35.56964 -34.06137 -33.73416 -32.25576 -31.75283 -31.18096 -29.57889 -27.07900 -26.50622 -24.92539 -24.07693 -23.80089 -23.22049 -22.31675 -21.80420 -21.04512 -19.46598 -18.81777 -18.53235 -17.65179 -17.35512 -16.94342 -16.76445 -15.94798 -15.92197 -15.91613 -15.54316 -15.37955 -15.33512 -15.12515 -15.03777 -14.78943 -14.70930 -14.32875 -14.02472 -13.86001 -13.79748 -13.21164 -13.15527 -12.98856 -12.95998 -12.79338 -12.56499 -12.53356 -12.41758 -12.22587 -12.02366 -11.85973 -11.56156 -11.41407 -11.23292 -10.93171 -10.64907 -10.54309 -10.35114 -10.34531 -9.75822 -8.69867 -8.55916 -7.86938 -5.32735 0.38311 0.53842 1.47357 1.50139 1.51774 1.58748 2.16359 2.31944 2.53074 2.98398 3.27577 3.38315 3.61246 3.68136 3.77770 3.91942 4.01664 4.03373 4.08607 4.19380 4.27524 4.33116 4.35586 4.36694 4.47777 4.66511 4.72925 4.79032 4.83687 4.84208 4.88257 4.93642 4.99618 5.03969 5.07961 5.16608 5.17480 5.22389 5.30878 5.39588 5.48456 5.50007 5.60613 5.65520 5.71563 5.72194 6.03010 6.07271 6.39808 6.54943 7.13169 7.15525 7.24918 7.60544 7.84999 8.38052 9.20056 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.038207 B = 0.001358 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.677734 B =20616.012535 C =20893.157898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.205 4.205 3 C -0.040 4.040 4 C -0.240 4.240 5 C 0.379 3.621 6 N -0.727 5.727 7 C 0.132 3.868 8 C 0.135 3.865 9 N -0.727 5.727 10 C 0.701 3.299 11 O -0.637 6.637 12 N -0.724 5.724 13 C 0.181 3.819 14 C -0.123 4.123 15 C 0.144 3.856 16 N -0.608 5.608 17 C -0.267 4.267 18 H 0.067 0.933 19 C -0.047 4.047 20 N -0.935 5.935 21 Si 0.969 3.031 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.275 1.275 25 C 0.179 3.821 26 C -0.127 4.127 27 N -0.574 5.574 28 C 0.130 3.870 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.405 0.595 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.416 0.584 40 H 0.412 0.588 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.057 0.943 44 H 0.005 0.995 45 H 0.057 0.943 46 H 0.251 0.749 47 H -0.007 1.007 48 H 0.063 0.937 49 H 0.077 0.923 50 H 0.072 0.928 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.801 -4.136 0.667 35.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.210 4.210 3 C -0.066 4.066 4 C -0.265 4.265 5 C 0.144 3.856 6 N -0.361 5.361 7 C 0.007 3.993 8 C 0.010 3.990 9 N -0.385 5.385 10 C 0.400 3.600 11 O -0.518 6.518 12 N -0.379 5.379 13 C 0.076 3.924 14 C -0.164 4.164 15 C 0.018 3.982 16 N -0.332 5.332 17 C -0.397 4.397 18 H 0.085 0.915 19 C -0.243 4.243 20 N -0.581 5.581 21 Si 0.797 3.203 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.201 1.201 25 C 0.052 3.948 26 C -0.167 4.167 27 N -0.292 5.292 28 C -0.027 4.027 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.174 0.826 33 H 0.168 0.832 34 H 0.240 0.760 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.253 0.747 40 H 0.248 0.752 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.023 0.977 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.011 0.989 48 H 0.082 0.918 49 H 0.096 0.904 50 H 0.090 0.910 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -33.638 -5.642 0.559 34.113 hybrid contribution 0.623 1.402 0.087 1.536 sum -33.016 -4.240 0.646 33.293 Atomic orbital electron populations 1.20612 0.88653 1.03533 1.02722 1.20932 0.98771 0.93716 1.07548 1.21614 0.93194 0.99105 0.92663 1.21664 0.96034 0.97326 1.11464 1.18554 0.85394 0.89931 0.91753 1.44232 1.01478 1.09186 1.81162 1.21380 0.87883 0.86459 1.03588 1.21074 0.89324 0.86310 1.02326 1.44575 1.03321 1.10346 1.80276 1.16092 0.82127 0.84212 0.77526 1.90918 1.71558 1.29626 1.59703 1.45085 1.06300 1.07558 1.78930 1.20482 0.77761 0.98172 0.96030 1.22181 0.96234 1.01162 0.96787 1.20969 0.92419 0.88817 0.96037 1.44333 1.45503 1.28357 1.14997 1.19504 1.07483 1.20813 0.91914 0.91500 1.25803 0.98264 1.03215 0.96983 1.70175 1.37485 1.41624 1.08833 0.85327 0.78131 0.79707 0.77162 1.20377 1.22061 1.20053 1.20563 0.89923 0.99108 0.85183 1.22256 0.97207 0.96392 1.00836 1.67104 1.09904 1.30555 1.21611 1.22663 0.87970 0.98879 0.93207 0.90935 0.90900 0.90794 0.82623 0.83237 0.76013 0.89686 0.89711 0.92047 0.92067 0.74682 0.75197 0.92755 0.91421 0.92435 0.97661 0.92473 0.94005 0.98873 0.91819 0.90430 0.90951 0.81528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.03 71.24 0.71 0.12 16 2 C -0.20 -2.42 5.90 -19.76 -0.12 -2.53 16 3 C -0.04 -0.44 9.85 22.44 0.22 -0.22 16 4 C -0.24 -3.09 9.33 22.50 0.21 -2.88 16 5 C 0.38 6.51 7.65 133.06 1.02 7.53 16 6 N -0.73 -10.41 5.73 -345.08 -1.98 -12.39 16 7 C 0.13 1.26 5.01 86.38 0.43 1.69 16 8 C 0.14 2.04 5.79 86.38 0.50 2.54 16 9 N -0.73 -11.71 5.56 -478.54 -2.66 -14.37 16 10 C 0.70 18.75 8.53 179.05 1.53 20.28 16 11 O -0.64 -23.82 16.00 -3.98 -0.06 -23.89 16 12 N -0.72 -17.86 5.08 -457.68 -2.33 -20.18 16 13 C 0.18 6.06 2.42 45.02 0.11 6.17 16 14 C -0.12 -4.39 5.65 30.67 0.17 -4.22 16 15 C 0.14 6.28 6.52 86.36 0.56 6.84 16 16 N -0.61 -30.68 2.99 -699.13 -2.09 -32.77 16 17 C -0.27 -14.64 9.58 84.03 0.81 -13.84 16 18 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 19 C -0.05 -2.61 4.92 84.86 0.42 -2.19 16 20 N -0.94 -54.96 11.19 21.65 0.24 -54.72 16 21 Si 0.97 44.19 29.59 68.60 2.03 46.21 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 C 0.18 8.46 5.30 86.36 0.46 8.92 16 26 C -0.13 -4.40 5.55 30.67 0.17 -4.23 16 27 N -0.57 -11.38 10.39 -193.26 -2.01 -13.39 16 28 C 0.13 1.97 10.85 84.62 0.92 2.89 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.34 8.09 -2.39 -0.02 0.32 16 31 H 0.07 0.31 8.09 -2.39 -0.02 0.29 16 32 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 33 H 0.15 1.21 6.71 -2.91 -0.02 1.19 16 34 H 0.40 6.12 8.60 -92.71 -0.80 5.33 16 35 H 0.09 0.60 7.92 -2.39 -0.02 0.58 16 36 H 0.08 0.61 7.93 -2.39 -0.02 0.59 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.42 3.45 8.49 -92.71 -0.79 2.67 16 40 H 0.41 7.03 8.62 -92.71 -0.80 6.23 16 41 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 42 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.06 2.03 8.14 -2.38 -0.02 2.02 16 44 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 45 H 0.06 2.43 7.93 -2.38 -0.02 2.41 16 46 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 47 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 48 H 0.06 3.37 6.07 -2.39 -0.01 3.36 16 49 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 50 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 51 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -76.17 412.33 -2.16 -78.33 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -1.42 Total: 20.28 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 8.12 Total: 26.87 kcal Atomic # 7 Polarization: -136.99 SS G_CDS: -10.82 Total: -147.81 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.89 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Total: -76.17 -2.16 -78.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917311981.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.496 kcal (2) G-P(sol) polarization free energy of solvation -76.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds