Wall clock time and date at job start Wed Apr 1 2020 04:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35237 * 126.06727 * 2 1 4 4 C 1.40400 * 107.86801 * 179.97438 * 3 2 1 5 5 N 1.40199 * 125.97491 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99924 * 0.02562 * 5 4 3 7 7 O 1.21590 * 119.99912 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00067 * 179.97438 * 6 5 4 9 9 C 1.47081 * 125.62596 * 359.97438 * 8 6 5 10 10 C 1.54462 * 107.29056 * 181.02333 * 9 8 6 11 11 C 1.54399 * 102.88607 * 21.52567 * 10 9 8 12 12 C 1.47552 * 125.63084 * 179.97438 * 8 6 5 13 13 C 1.52140 * 110.47653 * 207.55229 * 11 10 9 14 14 C 1.53259 * 109.43564 * 293.27348 * 13 11 10 15 15 C 1.53132 * 109.05870 * 303.72469 * 14 13 11 16 16 C 1.53049 * 109.35657 * 58.38413 * 15 14 13 17 17 N 1.45866 * 110.62874 * 83.37522 * 11 10 9 18 18 N 1.31211 * 108.05153 * 0.26199 * 4 3 2 19 19 N 1.34964 * 126.06851 * 179.97438 * 2 1 3 20 20 C 1.46493 * 125.97844 * 0.02975 * 19 2 1 21 21 C 1.50702 * 109.47453 * 90.00042 * 20 19 2 22 22 H 1.07994 * 119.99557 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99999 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00025 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99990 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47578 * 90.00055 * 25 23 21 27 27 H 1.48506 * 109.46943 * 210.00128 * 25 23 21 28 28 H 1.48499 * 109.47236 * 329.99852 * 25 23 21 29 29 H 1.09007 * 109.47169 * 89.98259 * 1 2 3 30 30 H 1.09004 * 109.46884 * 209.97319 * 1 2 3 31 31 H 1.08997 * 109.47858 * 329.97615 * 1 2 3 32 32 H 1.07999 * 126.06899 * 359.97438 * 3 2 1 33 33 H 0.96996 * 119.99831 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.87779 * 300.44269 * 9 8 6 35 35 H 1.08997 * 109.88330 * 61.60204 * 9 8 6 36 36 H 1.09001 * 110.73197 * 263.18108 * 10 9 8 37 37 H 1.08997 * 110.73404 * 139.88192 * 10 9 8 38 38 H 1.08996 * 110.37947 * 37.78904 * 12 8 6 39 39 H 1.08999 * 110.37625 * 275.44157 * 12 8 6 40 40 H 1.08990 * 109.47571 * 53.26105 * 13 11 10 41 41 H 1.08997 * 109.47361 * 173.28233 * 13 11 10 42 42 H 1.08995 * 109.54392 * 63.59858 * 14 13 11 43 43 H 1.09001 * 109.53690 * 183.85702 * 14 13 11 44 44 H 1.08999 * 109.49008 * 178.34801 * 15 14 13 45 45 H 1.08999 * 109.49040 * 298.39753 * 15 14 13 46 46 H 1.08999 * 109.47408 * 180.10553 * 16 15 14 47 47 H 1.09001 * 109.47087 * 60.09777 * 16 15 14 48 48 H 1.00901 * 111.00002 * 188.45799 * 17 11 10 49 49 H 1.09005 * 109.46860 * 209.99929 * 20 19 2 50 50 H 1.08994 * 109.47016 * 329.99332 * 20 19 2 51 51 H 0.97006 * 120.00488 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6547 0.0006 5 7 4.7737 1.4753 0.0003 6 6 4.6369 2.8160 -0.0001 7 8 3.5276 3.3139 0.0002 8 7 5.7297 3.6050 0.0001 9 6 7.1241 3.1371 0.0013 10 6 8.0283 4.3891 0.0274 11 6 7.0913 5.4789 0.5916 12 6 5.7246 5.0805 -0.0009 13 6 7.5104 6.8528 0.0902 14 6 8.8768 7.2165 0.6814 15 6 8.7962 7.1436 2.2089 16 6 8.3735 5.7335 2.6278 17 7 7.0584 5.4243 2.0488 18 7 3.6336 -0.6574 -0.0048 19 7 2.3016 -1.0909 0.0005 20 6 1.8501 -2.4845 0.0005 21 6 1.6958 -2.9627 -1.4203 22 1 1.9121 -2.2951 -2.2411 23 6 1.2776 -4.2521 -1.6722 24 7 1.1425 -4.6692 -2.9120 25 14 0.9028 -5.4066 -0.2523 26 1 -0.5282 -5.2806 0.1238 27 1 1.1852 -6.8053 -0.6638 28 1 1.7537 -5.0519 0.9120 29 1 -0.3634 0.0003 -1.0277 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3635 0.8897 0.5142 32 1 1.9719 2.1211 -0.0004 33 1 5.6586 1.0780 0.0011 34 1 7.3097 2.5274 0.8855 35 1 7.3211 2.5565 -0.8998 36 1 8.3588 4.6475 -0.9786 37 1 8.8820 4.2348 0.6873 38 1 4.9154 5.4577 0.6244 39 1 5.6271 5.4590 -1.0184 40 1 7.5775 6.8379 -0.9975 41 1 6.7722 7.5930 0.3988 42 1 9.6283 6.5135 0.3221 43 1 9.1475 8.2280 0.3786 44 1 9.7726 7.3725 2.6359 45 1 8.0633 7.8654 2.5692 46 1 8.3137 5.6800 3.7148 47 1 9.1075 5.0123 2.2683 48 1 6.3475 6.0381 2.4177 49 1 2.5846 -3.1044 0.5147 50 1 0.8913 -2.5558 0.5140 51 1 0.8486 -5.5765 -3.0893 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926081239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:03 Heat of formation + Delta-G solvation = 59.959818 kcal Electronic energy + Delta-G solvation = -30709.159843 eV Core-core repulsion = 26645.205867 eV Total energy + Delta-G solvation = -4063.953976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.07944 -40.49681 -39.16769 -36.40450 -34.76363 -33.28538 -32.27704 -32.12421 -31.26713 -30.96749 -30.13563 -27.39434 -26.52654 -26.26938 -24.22944 -23.36363 -22.59541 -21.92701 -20.80450 -19.81523 -19.57575 -18.94350 -17.63347 -17.07556 -16.68687 -16.20799 -15.99651 -15.44260 -15.27908 -15.18594 -14.67746 -14.64679 -14.46820 -14.09645 -13.80532 -13.65535 -13.25324 -13.10238 -12.94967 -12.83677 -12.54228 -12.45844 -12.32408 -12.21746 -12.11745 -11.91156 -11.75729 -11.51521 -11.47067 -11.36040 -11.16396 -10.96649 -10.79940 -10.75348 -10.52428 -9.97578 -9.90076 -9.64060 -9.52292 -8.77215 -8.74902 -8.68886 -7.89913 -7.35414 -6.22639 -4.25222 2.34490 2.65925 3.13530 3.17007 3.24744 3.26362 3.45409 3.67961 3.85923 3.90440 4.21116 4.23455 4.24999 4.34391 4.45292 4.59881 4.65230 4.81210 4.90949 5.00222 5.05935 5.17850 5.26235 5.31170 5.33658 5.39383 5.43062 5.47892 5.50963 5.55184 5.57123 5.61534 5.69058 5.72185 5.83065 5.89397 6.00377 6.10158 6.30984 6.42053 6.54065 6.61659 6.66758 6.67561 6.88499 6.96573 7.11369 7.33474 7.54313 7.93202 7.95929 8.36119 8.65744 8.68879 8.83545 9.32829 10.89916 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.001966 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.323552 B =14239.201255 C =14502.887552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 C -0.285 4.285 4 C 0.289 3.711 5 N -0.641 5.641 6 C 0.734 3.266 7 O -0.567 6.567 8 N -0.626 5.626 9 C 0.105 3.895 10 C -0.116 4.116 11 C 0.102 3.898 12 C 0.143 3.857 13 C -0.140 4.140 14 C -0.118 4.118 15 C -0.159 4.159 16 C 0.056 3.944 17 N -0.667 5.667 18 N -0.322 5.322 19 N -0.319 5.319 20 C 0.232 3.768 21 C -0.539 4.539 22 H 0.081 0.919 23 C 0.078 3.922 24 N -0.887 5.887 25 Si 0.872 3.128 26 H -0.271 1.271 27 H -0.280 1.280 28 H -0.263 1.263 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.162 0.838 33 H 0.406 0.594 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.345 0.655 49 H 0.049 0.951 50 H 0.045 0.955 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.558 24.301 9.595 30.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.037 4.037 3 C -0.316 4.316 4 C 0.035 3.965 5 N -0.291 5.291 6 C 0.435 3.565 7 O -0.442 6.442 8 N -0.364 5.364 9 C -0.019 4.019 10 C -0.154 4.154 11 C 0.009 3.991 12 C 0.019 3.981 13 C -0.180 4.180 14 C -0.155 4.155 15 C -0.198 4.198 16 C -0.074 4.074 17 N -0.297 5.297 18 N -0.152 5.152 19 N -0.101 5.101 20 C 0.113 3.887 21 C -0.577 4.577 22 H 0.099 0.901 23 C -0.126 4.126 24 N -0.524 5.524 25 Si 0.698 3.302 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.188 1.188 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.179 0.821 33 H 0.241 0.759 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.164 0.836 49 H 0.067 0.933 50 H 0.063 0.937 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.385 22.574 9.504 28.925 hybrid contribution 0.046 0.656 0.343 0.741 sum 15.432 23.230 9.847 29.576 Atomic orbital electron populations 1.20344 0.87863 1.02639 1.03402 1.21043 0.94857 0.87015 1.00827 1.21247 0.89676 0.99831 1.20894 1.18652 0.86652 0.89167 1.02038 1.41377 1.07502 1.03631 1.76597 1.15055 0.83371 0.80103 0.77977 1.90865 1.22875 1.73391 1.57076 1.47295 1.04404 1.06273 1.78450 1.21980 0.81106 0.97256 1.01524 1.22646 0.97644 0.93607 1.01532 1.21404 0.95288 0.93871 0.88501 1.21958 0.96533 0.79099 1.00491 1.22001 0.97703 0.96832 1.01442 1.21560 0.97031 1.01650 0.95297 1.22269 1.02172 0.99005 0.96390 1.22090 0.91173 0.94528 0.99565 1.60239 1.06662 1.58517 1.04238 1.77250 0.99338 1.08448 1.30196 1.48462 1.01199 1.06901 1.53547 1.19966 0.95230 0.73867 0.99628 1.21191 1.47110 0.98942 0.90450 0.90123 1.24810 0.94548 0.97460 0.95780 1.69875 1.45828 1.18105 1.18639 0.86904 0.79418 0.80942 0.82889 1.19644 1.20547 1.18791 0.90134 0.91187 0.90684 0.82073 0.75943 0.91206 0.91666 0.90126 0.89541 0.90081 0.91065 0.90774 0.91489 0.91591 0.91859 0.91470 0.91995 0.90539 0.90576 0.83607 0.93282 0.93708 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.01 0.36 -1.09 16 2 C 0.09 2.00 6.92 -82.28 -0.57 1.43 16 3 C -0.29 -6.10 9.52 -39.84 -0.38 -6.48 16 4 C 0.29 6.14 8.11 -154.36 -1.25 4.88 16 5 N -0.64 -10.89 5.41 -15.50 -0.08 -10.98 16 6 C 0.73 11.95 8.46 -86.92 -0.74 11.21 16 7 O -0.57 -11.00 13.74 5.29 0.07 -10.92 16 8 N -0.63 -7.36 3.33 -176.45 -0.59 -7.95 16 9 C 0.10 0.90 6.15 -2.96 -0.02 0.88 16 10 C -0.12 -0.72 5.12 -25.23 -0.13 -0.85 16 11 C 0.10 0.67 0.64 -131.24 -0.08 0.58 16 12 C 0.14 1.34 6.02 -2.84 -0.02 1.32 16 13 C -0.14 -0.71 4.80 -27.04 -0.13 -0.84 16 14 C -0.12 -0.52 5.82 -26.53 -0.15 -0.68 16 15 C -0.16 -0.70 6.06 -26.64 -0.16 -0.86 16 16 C 0.06 0.29 6.36 -3.75 -0.02 0.27 16 17 N -0.67 -4.56 6.32 -99.60 -0.63 -5.19 16 18 N -0.32 -7.59 12.59 31.44 0.40 -7.19 16 19 N -0.32 -7.62 3.59 -58.33 -0.21 -7.83 16 20 C 0.23 5.71 5.06 -5.20 -0.03 5.68 16 21 C -0.54 -15.33 9.94 -34.44 -0.34 -15.67 16 22 H 0.08 2.60 8.06 -52.49 -0.42 2.17 16 23 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 24 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 25 Si 0.87 20.39 27.47 -169.99 -4.67 15.72 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.07 1.16 7.07 -51.93 -0.37 0.79 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.16 3.40 5.91 -52.49 -0.31 3.09 16 33 H 0.41 5.79 7.81 -40.82 -0.32 5.47 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.43 7.93 -51.93 -0.41 0.01 16 37 H 0.09 0.47 6.04 -51.93 -0.31 0.16 16 38 H 0.08 0.85 8.00 -51.93 -0.42 0.43 16 39 H 0.07 0.63 8.00 -51.93 -0.42 0.21 16 40 H 0.07 0.36 8.05 -51.93 -0.42 -0.06 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.29 7.60 -51.93 -0.39 -0.10 16 43 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.41 6.20 -51.93 -0.32 0.08 16 48 H 0.34 2.27 8.81 -39.29 -0.35 1.93 16 49 H 0.05 1.21 7.20 -51.93 -0.37 0.84 16 50 H 0.05 1.01 6.46 -51.93 -0.34 0.68 16 51 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 396.46 15.07 5.97 5.97 Total: -1.00 -34.63 396.46 -10.86 -45.49 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -8.14 Total: 6.82 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -3.76 Total: 1.91 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -0.34 Total: -65.00 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.67 Total: 15.72 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.63 -10.86 -45.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926081239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.452 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds