Wall clock time and date at job start Wed Apr 1 2020 04:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35237 * 126.06727 * 2 1 4 4 C 1.40400 * 107.86801 * 179.97438 * 3 2 1 5 5 N 1.40199 * 125.97491 * 179.97438 * 4 3 2 6 6 C 1.34773 * 119.99924 * 0.02562 * 5 4 3 7 7 O 1.21590 * 119.99912 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00067 * 179.97438 * 6 5 4 9 9 C 1.47081 * 125.62596 * 359.97438 * 8 6 5 10 10 C 1.54462 * 107.29056 * 181.02333 * 9 8 6 11 11 C 1.54399 * 102.88607 * 21.52567 * 10 9 8 12 12 C 1.47552 * 125.63084 * 179.97438 * 8 6 5 13 13 C 1.52140 * 110.47653 * 207.55229 * 11 10 9 14 14 C 1.53259 * 109.43564 * 293.27348 * 13 11 10 15 15 C 1.53132 * 109.05870 * 303.72469 * 14 13 11 16 16 C 1.53049 * 109.35657 * 58.38413 * 15 14 13 17 17 N 1.45866 * 110.62874 * 83.37522 * 11 10 9 18 18 N 1.31211 * 108.05153 * 0.26199 * 4 3 2 19 19 N 1.34964 * 126.06851 * 179.97438 * 2 1 3 20 20 C 1.46493 * 125.97844 * 0.02975 * 19 2 1 21 21 C 1.50702 * 109.47453 * 90.00042 * 20 19 2 22 22 H 1.07994 * 119.99557 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99999 * 180.02562 * 21 20 19 24 24 N 1.31509 * 120.00025 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 119.99990 * 359.97438 * 23 21 20 26 26 H 1.48496 * 109.47578 * 90.00055 * 25 23 21 27 27 H 1.48506 * 109.46943 * 210.00128 * 25 23 21 28 28 H 1.48499 * 109.47236 * 329.99852 * 25 23 21 29 29 H 1.09007 * 109.47169 * 89.98259 * 1 2 3 30 30 H 1.09004 * 109.46884 * 209.97319 * 1 2 3 31 31 H 1.08997 * 109.47858 * 329.97615 * 1 2 3 32 32 H 1.07999 * 126.06899 * 359.97438 * 3 2 1 33 33 H 0.96996 * 119.99831 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.87779 * 300.44269 * 9 8 6 35 35 H 1.08997 * 109.88330 * 61.60204 * 9 8 6 36 36 H 1.09001 * 110.73197 * 263.18108 * 10 9 8 37 37 H 1.08997 * 110.73404 * 139.88192 * 10 9 8 38 38 H 1.08996 * 110.37947 * 37.78904 * 12 8 6 39 39 H 1.08999 * 110.37625 * 275.44157 * 12 8 6 40 40 H 1.08990 * 109.47571 * 53.26105 * 13 11 10 41 41 H 1.08997 * 109.47361 * 173.28233 * 13 11 10 42 42 H 1.08995 * 109.54392 * 63.59858 * 14 13 11 43 43 H 1.09001 * 109.53690 * 183.85702 * 14 13 11 44 44 H 1.08999 * 109.49008 * 178.34801 * 15 14 13 45 45 H 1.08999 * 109.49040 * 298.39753 * 15 14 13 46 46 H 1.08999 * 109.47408 * 180.10553 * 16 15 14 47 47 H 1.09001 * 109.47087 * 60.09777 * 16 15 14 48 48 H 1.00901 * 111.00002 * 188.45799 * 17 11 10 49 49 H 1.09005 * 109.46860 * 209.99929 * 20 19 2 50 50 H 1.08994 * 109.47016 * 329.99332 * 20 19 2 51 51 H 0.97006 * 120.00488 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6370 0.6547 0.0006 5 7 4.7737 1.4753 0.0003 6 6 4.6369 2.8160 -0.0001 7 8 3.5276 3.3139 0.0002 8 7 5.7297 3.6050 0.0001 9 6 7.1241 3.1371 0.0013 10 6 8.0283 4.3891 0.0274 11 6 7.0913 5.4789 0.5916 12 6 5.7246 5.0805 -0.0009 13 6 7.5104 6.8528 0.0902 14 6 8.8768 7.2165 0.6814 15 6 8.7962 7.1436 2.2089 16 6 8.3735 5.7335 2.6278 17 7 7.0584 5.4243 2.0488 18 7 3.6336 -0.6574 -0.0048 19 7 2.3016 -1.0909 0.0005 20 6 1.8501 -2.4845 0.0005 21 6 1.6958 -2.9627 -1.4203 22 1 1.9121 -2.2951 -2.2411 23 6 1.2776 -4.2521 -1.6722 24 7 1.1425 -4.6692 -2.9120 25 14 0.9028 -5.4066 -0.2523 26 1 -0.5282 -5.2806 0.1238 27 1 1.1852 -6.8053 -0.6638 28 1 1.7537 -5.0519 0.9120 29 1 -0.3634 0.0003 -1.0277 30 1 -0.3633 -0.8903 0.5134 31 1 -0.3635 0.8897 0.5142 32 1 1.9719 2.1211 -0.0004 33 1 5.6586 1.0780 0.0011 34 1 7.3097 2.5274 0.8855 35 1 7.3211 2.5565 -0.8998 36 1 8.3588 4.6475 -0.9786 37 1 8.8820 4.2348 0.6873 38 1 4.9154 5.4577 0.6244 39 1 5.6271 5.4590 -1.0184 40 1 7.5775 6.8379 -0.9975 41 1 6.7722 7.5930 0.3988 42 1 9.6283 6.5135 0.3221 43 1 9.1475 8.2280 0.3786 44 1 9.7726 7.3725 2.6359 45 1 8.0633 7.8654 2.5692 46 1 8.3137 5.6800 3.7148 47 1 9.1075 5.0123 2.2683 48 1 6.3475 6.0381 2.4177 49 1 2.5846 -3.1044 0.5147 50 1 0.8913 -2.5558 0.5140 51 1 0.8486 -5.5765 -3.0893 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926081239.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:48:02 Heat of formation + Delta-G solvation = 35.894952 kcal Electronic energy + Delta-G solvation = -30710.203374 eV Core-core repulsion = 26645.205867 eV Total energy + Delta-G solvation = -4064.997507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.38013 -41.60778 -40.26471 -37.22097 -36.31966 -35.22543 -33.42906 -32.79316 -32.68939 -32.35362 -30.81857 -29.06852 -27.89951 -27.41382 -25.05517 -24.37362 -23.87613 -22.77844 -21.91224 -21.19238 -20.72759 -19.92270 -19.22335 -18.75447 -17.79734 -17.36781 -17.12616 -16.68903 -16.41895 -16.26798 -15.91107 -15.57185 -15.49432 -15.05826 -14.95381 -14.78541 -14.47934 -14.34884 -13.90928 -13.86268 -13.77900 -13.69387 -13.59918 -13.48705 -13.19526 -12.88465 -12.84830 -12.61863 -12.52053 -12.28175 -12.23493 -12.00396 -11.87007 -11.83213 -11.59546 -11.43412 -11.38152 -11.26252 -11.11080 -10.88120 -9.78715 -9.55166 -9.21808 -9.01776 -8.39267 -6.50284 0.96430 1.06964 1.35871 1.38838 1.48931 1.63872 1.98707 2.27867 2.36594 2.86185 2.93046 3.17057 3.37693 3.62440 3.82329 3.91129 4.02802 4.10428 4.17987 4.22103 4.27401 4.38978 4.41591 4.52228 4.53843 4.57974 4.66395 4.72037 4.75300 4.80732 4.82920 4.84311 4.92002 4.95769 5.00684 5.02842 5.11436 5.13585 5.13780 5.16951 5.20614 5.24379 5.25533 5.42309 5.46238 5.84988 5.89736 6.01691 6.20299 6.38561 6.45395 6.52859 6.63544 7.05206 7.13450 7.38225 8.77405 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.001966 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.323552 B =14239.201255 C =14502.887552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 C -0.298 4.298 4 C 0.295 3.705 5 N -0.635 5.635 6 C 0.727 3.273 7 O -0.603 6.603 8 N -0.617 5.617 9 C 0.096 3.904 10 C -0.108 4.108 11 C 0.113 3.887 12 C 0.135 3.865 13 C -0.135 4.135 14 C -0.115 4.115 15 C -0.154 4.154 16 C 0.058 3.942 17 N -0.682 5.682 18 N -0.358 5.358 19 N -0.343 5.343 20 C 0.242 3.758 21 C -0.550 4.550 22 H 0.023 0.977 23 C 0.021 3.979 24 N -0.937 5.937 25 Si 0.952 3.048 26 H -0.250 1.250 27 H -0.278 1.278 28 H -0.245 1.245 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.164 0.836 33 H 0.417 0.583 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.344 0.656 49 H 0.049 0.951 50 H 0.074 0.926 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.523 25.064 11.451 32.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.039 4.039 3 C -0.329 4.329 4 C 0.040 3.960 5 N -0.286 5.286 6 C 0.428 3.572 7 O -0.481 6.481 8 N -0.354 5.354 9 C -0.026 4.026 10 C -0.146 4.146 11 C 0.020 3.980 12 C 0.013 3.987 13 C -0.175 4.175 14 C -0.153 4.153 15 C -0.193 4.193 16 C -0.071 4.071 17 N -0.312 5.312 18 N -0.188 5.188 19 N -0.125 5.125 20 C 0.122 3.878 21 C -0.588 4.588 22 H 0.041 0.959 23 C -0.179 4.179 24 N -0.576 5.576 25 Si 0.772 3.228 26 H -0.174 1.174 27 H -0.203 1.203 28 H -0.168 1.168 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.126 0.874 32 H 0.182 0.818 33 H 0.254 0.746 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.163 0.837 49 H 0.067 0.933 50 H 0.091 0.909 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.418 23.397 11.365 30.759 hybrid contribution -0.171 0.580 -0.322 0.685 sum 16.247 23.976 11.043 30.996 Atomic orbital electron populations 1.20507 0.85039 1.04757 1.03831 1.21743 0.96728 0.86301 0.99142 1.21408 0.89991 0.99969 1.21542 1.18946 0.88026 0.88937 1.00130 1.41381 1.06977 1.03761 1.76523 1.15258 0.84067 0.79879 0.77963 1.90822 1.24684 1.73852 1.58751 1.47375 1.04589 1.07012 1.76436 1.22244 0.79599 0.98764 1.01964 1.22681 0.97238 0.91889 1.02802 1.21301 0.93376 0.94880 0.88439 1.22206 0.98045 0.77501 1.00989 1.21957 0.98164 0.95579 1.01809 1.21554 0.96486 1.02114 0.95120 1.22215 1.02443 0.98219 0.96471 1.22098 0.90321 0.95174 0.99518 1.60248 1.07554 1.58986 1.04418 1.77161 0.99818 1.09613 1.32238 1.48414 1.01729 1.07045 1.55304 1.19779 0.96454 0.74551 0.97047 1.21246 1.47673 0.98727 0.91137 0.95904 1.25844 0.93750 0.99211 0.99106 1.70036 1.46954 1.18998 1.21584 0.85667 0.80507 0.77644 0.78947 1.17377 1.20331 1.16828 0.90379 0.90201 0.87437 0.81821 0.74566 0.91183 0.90856 0.88553 0.88195 0.91539 0.90347 0.90162 0.91612 0.91066 0.91318 0.90704 0.92292 0.90535 0.90327 0.83692 0.93262 0.90885 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.78 10.11 71.24 0.72 -2.06 16 2 C 0.09 3.91 6.92 41.39 0.29 4.19 16 3 C -0.30 -12.91 9.52 22.10 0.21 -12.70 16 4 C 0.29 12.76 8.11 133.31 1.08 13.84 16 5 N -0.64 -21.81 5.41 -321.23 -1.74 -23.55 16 6 C 0.73 23.87 8.46 179.05 1.51 25.39 16 7 O -0.60 -23.84 13.74 -4.00 -0.05 -23.89 16 8 N -0.62 -14.22 3.33 -830.43 -2.77 -16.99 16 9 C 0.10 1.53 6.15 86.77 0.53 2.06 16 10 C -0.11 -1.08 5.12 31.57 0.16 -0.92 16 11 C 0.11 1.28 0.64 4.32 0.00 1.29 16 12 C 0.14 2.45 6.02 86.58 0.52 2.97 16 13 C -0.14 -1.08 4.80 30.40 0.15 -0.94 16 14 C -0.12 -0.72 5.82 30.73 0.18 -0.55 16 15 C -0.15 -1.02 6.06 30.65 0.19 -0.83 16 16 C 0.06 0.50 6.36 86.30 0.55 1.05 16 17 N -0.68 -8.43 6.32 -469.02 -2.97 -11.40 16 18 N -0.36 -17.22 12.59 -54.43 -0.69 -17.91 16 19 N -0.34 -16.55 3.59 -338.46 -1.22 -17.77 16 20 C 0.24 11.80 5.06 85.63 0.43 12.24 16 21 C -0.55 -32.15 9.94 25.60 0.25 -31.90 16 22 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 23 C 0.02 1.17 5.47 84.65 0.46 1.63 16 24 N -0.94 -57.65 13.96 21.45 0.30 -57.35 16 25 Si 0.95 41.32 27.47 68.60 1.88 43.21 16 26 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 27 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.24 -9.86 6.54 99.48 0.65 -9.20 16 29 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 30 H 0.08 2.49 7.07 -2.38 -0.02 2.48 16 31 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 32 H 0.16 7.00 5.91 -2.91 -0.02 6.98 16 33 H 0.42 11.95 7.81 -92.71 -0.72 11.22 16 34 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.10 0.71 7.93 -2.39 -0.02 0.70 16 37 H 0.10 0.80 6.04 -2.39 -0.01 0.78 16 38 H 0.07 1.41 8.00 -2.39 -0.02 1.39 16 39 H 0.08 1.32 8.00 -2.39 -0.02 1.30 16 40 H 0.08 0.57 8.05 -2.39 -0.02 0.55 16 41 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 0.40 7.60 -2.39 -0.02 0.38 16 43 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 46 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.08 0.65 6.20 -2.39 -0.01 0.63 16 48 H 0.34 4.28 8.81 -89.69 -0.79 3.49 16 49 H 0.05 2.39 7.20 -2.38 -0.02 2.37 16 50 H 0.07 3.14 6.46 -2.39 -0.02 3.13 16 51 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -78.35 396.46 -0.61 -78.96 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: -0.61 Total: 31.93 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 7.24 Total: 14.75 kcal Atomic # 7 Polarization: -135.88 SS G_CDS: -9.07 Total: -144.96 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.89 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.88 Total: 43.21 kcal Total: -78.35 -0.61 -78.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926081239.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.852 kcal (2) G-P(sol) polarization free energy of solvation -78.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds