Wall clock time and date at job start Wed Apr 1 2020 04:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38880 * 120.33729 * 2 1 4 4 C 1.38296 * 118.50709 * 180.02562 * 3 2 1 5 5 C 1.39137 * 119.09510 * 359.97438 * 4 3 2 6 6 N 1.39000 * 119.70191 * 180.02562 * 5 4 3 7 7 C 1.46499 * 120.00479 * 0.02562 * 6 5 4 8 8 C 1.53001 * 109.47370 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46836 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99662 * 180.02562 * 9 8 7 11 11 O 1.21581 * 120.00089 * 354.92306 * 10 9 8 12 12 N 1.34774 * 119.99633 * 175.19700 * 10 9 8 13 13 C 1.47081 * 120.87815 * 184.43638 * 12 10 9 14 14 C 1.53694 * 108.27814 * 128.75300 * 13 12 10 15 15 N 1.46897 * 109.25719 * 54.08280 * 14 13 12 16 16 C 1.46894 * 111.00511 * 172.60739 * 15 14 13 17 17 C 1.50702 * 109.47090 * 294.30409 * 16 15 14 18 18 H 1.07997 * 119.99963 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00192 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99689 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00154 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46899 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46782 * 119.99894 * 21 19 17 24 24 H 1.48493 * 109.46984 * 239.99850 * 21 19 17 25 25 C 1.46904 * 111.26796 * 296.75582 * 15 14 13 26 26 C 1.47078 * 120.88580 * 4.71390 * 12 10 9 27 27 N 1.32397 * 120.59157 * 0.28053 * 5 4 3 28 28 C 1.31978 * 121.61824 * 359.43036 * 27 5 4 29 29 H 1.09004 * 109.46711 * 90.00210 * 1 2 3 30 30 H 1.08998 * 109.47034 * 210.00376 * 1 2 3 31 31 H 1.08994 * 109.47224 * 330.00487 * 1 2 3 32 32 H 1.08000 * 120.74540 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.45013 * 180.02562 * 4 3 2 34 34 H 0.97007 * 119.99920 * 180.02562 * 6 5 4 35 35 H 1.09002 * 109.46703 * 59.99672 * 7 6 5 36 36 H 1.08999 * 109.46981 * 300.00274 * 7 6 5 37 37 H 1.08996 * 109.46823 * 60.00633 * 8 7 6 38 38 H 1.08997 * 109.46919 * 300.00251 * 8 7 6 39 39 H 0.96993 * 120.00327 * 0.02562 * 9 8 7 40 40 H 1.09002 * 109.63018 * 248.51866 * 13 12 10 41 41 H 1.09001 * 109.63196 * 9.10190 * 13 12 10 42 42 H 1.08993 * 109.65015 * 294.08090 * 14 13 12 43 43 H 1.09000 * 109.42046 * 173.94552 * 14 13 12 44 44 H 1.09002 * 109.47044 * 54.30158 * 16 15 14 45 45 H 1.08998 * 109.47782 * 174.29998 * 16 15 14 46 46 H 0.96999 * 119.99180 * 180.02562 * 20 19 17 47 47 H 1.08997 * 109.49477 * 303.14367 * 25 15 14 48 48 H 1.08997 * 109.49313 * 183.05854 * 25 15 14 49 49 H 1.09003 * 109.62597 * 350.89567 * 26 12 10 50 50 H 1.08993 * 109.63151 * 111.47962 * 26 12 10 51 51 H 1.08003 * 119.56866 * 180.29119 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2085 1.1986 0.0000 4 6 3.5908 1.1545 -0.0005 5 6 4.2282 -0.0823 -0.0005 6 7 5.6169 -0.1414 -0.0005 7 6 6.4028 1.0949 0.0000 8 6 7.8938 0.7516 0.0005 9 7 8.6796 1.9880 0.0005 10 6 10.0262 1.9307 0.0004 11 8 10.5889 0.8570 0.0935 12 7 10.7489 3.0640 -0.0974 13 6 12.2156 3.0178 -0.1969 14 6 12.6438 3.8671 -1.4042 15 7 12.0727 5.2144 -1.2758 16 6 12.5978 6.1101 -2.3149 17 6 14.0751 6.3169 -2.1003 18 1 14.5738 5.8318 -1.2744 19 6 14.7899 7.1254 -2.9585 20 7 14.1825 7.7157 -3.9647 21 14 16.6209 7.3823 -2.6921 22 1 17.0603 6.6131 -1.5003 23 1 17.3659 6.9111 -3.8872 24 1 16.8920 8.8264 -2.4774 25 6 10.6045 5.1760 -1.3067 26 6 10.0923 4.3801 -0.1014 27 7 3.5238 -1.2033 -0.0056 28 6 2.2041 -1.1913 0.0004 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6863 2.1440 -0.0004 33 1 4.1676 2.0675 -0.0001 34 1 6.0658 -1.0014 -0.0009 35 1 6.1640 1.6768 0.8903 36 1 6.1640 1.6776 -0.8897 37 1 8.1329 0.1696 -0.8895 38 1 8.1321 0.1691 0.8905 39 1 8.2308 2.8479 0.0005 40 1 12.6573 3.4219 0.7140 41 1 12.5407 1.9872 -0.3389 42 1 12.2834 3.4054 -2.3234 43 1 13.7314 3.9342 -1.4326 44 1 12.4320 5.6649 -3.2960 45 1 12.0848 7.0703 -2.2603 46 1 14.6856 8.2842 -4.5686 47 1 10.2725 4.6961 -2.2272 48 1 10.2131 6.1924 -1.2642 49 1 9.0129 4.2505 -0.1803 50 1 10.3338 4.9126 0.8184 51 1 1.6626 -2.1258 0.0008 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927473087.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:44 Heat of formation + Delta-G solvation = 3.961710 kcal Electronic energy + Delta-G solvation = -29237.052673 eV Core-core repulsion = 25170.670436 eV Total energy + Delta-G solvation = -4066.382236 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.51214 -41.13747 -39.20330 -37.73265 -36.00565 -35.68773 -34.38415 -33.89031 -32.35134 -31.94126 -30.39512 -29.35295 -27.28265 -26.62932 -25.00768 -24.58183 -23.97707 -23.44969 -22.33018 -22.14116 -20.57290 -19.27768 -18.68380 -18.45700 -17.69751 -17.29611 -17.04830 -16.72186 -16.15262 -16.00330 -15.92130 -15.77470 -15.58336 -15.37110 -15.19249 -15.12404 -14.99042 -14.74109 -14.41521 -14.04884 -13.85911 -13.78069 -13.53160 -13.15937 -13.11464 -12.93493 -12.83620 -12.72639 -12.58730 -12.42755 -12.35405 -12.29682 -12.14984 -11.75143 -11.40020 -11.18769 -10.93805 -10.64932 -10.61891 -10.35376 -10.32905 -9.62275 -9.03328 -8.56132 -8.20639 -6.29977 0.38270 0.53720 1.39438 1.42015 1.43330 1.56228 2.05460 2.20991 2.41043 2.94659 2.98346 3.12248 3.24144 3.58790 3.77461 3.95098 4.01412 4.02401 4.06131 4.15686 4.19416 4.26480 4.27518 4.32899 4.34856 4.45157 4.56646 4.72560 4.73356 4.79890 4.82160 4.86921 4.93666 4.95888 4.99635 5.03308 5.16714 5.17897 5.22188 5.23597 5.35032 5.43205 5.50060 5.64728 5.71703 5.88363 6.04315 6.06524 6.26188 6.55044 6.59515 6.85964 6.88345 7.24467 7.39977 7.45992 8.90551 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.001519 C = 0.001454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.702877 B =18426.992978 C =19256.956045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.205 4.205 3 C -0.040 4.040 4 C -0.241 4.241 5 C 0.379 3.621 6 N -0.726 5.726 7 C 0.130 3.870 8 C 0.135 3.865 9 N -0.730 5.730 10 C 0.707 3.293 11 O -0.633 6.633 12 N -0.628 5.628 13 C 0.145 3.855 14 C 0.057 3.943 15 N -0.538 5.538 16 C 0.208 3.792 17 C -0.522 4.522 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.262 1.262 23 H -0.282 1.282 24 H -0.279 1.279 25 C 0.036 3.964 26 C 0.126 3.874 27 N -0.573 5.573 28 C 0.130 3.870 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.149 0.851 34 H 0.405 0.595 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.412 0.588 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.009 0.991 43 H 0.079 0.921 44 H -0.042 1.042 45 H 0.012 0.988 46 H 0.264 0.736 47 H 0.019 0.981 48 H 0.091 0.909 49 H 0.114 0.886 50 H 0.089 0.911 51 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.347 -12.284 10.439 31.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.210 4.210 3 C -0.066 4.066 4 C -0.266 4.266 5 C 0.144 3.856 6 N -0.359 5.359 7 C 0.005 3.995 8 C 0.010 3.990 9 N -0.389 5.389 10 C 0.408 3.592 11 O -0.514 6.514 12 N -0.364 5.364 13 C 0.022 3.978 14 C -0.072 4.072 15 N -0.262 5.262 16 C 0.082 3.918 17 C -0.560 4.560 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.186 1.186 23 H -0.208 1.208 24 H -0.204 1.204 25 C -0.093 4.093 26 C 0.004 3.996 27 N -0.290 5.290 28 C -0.027 4.027 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.173 0.827 33 H 0.167 0.833 34 H 0.241 0.759 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.252 0.748 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.028 0.972 43 H 0.097 0.903 44 H -0.024 1.024 45 H 0.030 0.970 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.109 0.891 49 H 0.131 0.869 50 H 0.107 0.893 51 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -26.250 -13.351 10.802 31.369 hybrid contribution 0.607 0.798 -1.333 1.668 sum -25.643 -12.553 9.470 30.080 Atomic orbital electron populations 1.20613 0.88653 1.03556 1.02700 1.20932 0.98773 0.93712 1.07535 1.21611 0.93196 0.99123 0.92659 1.21666 0.96055 0.97360 1.11474 1.18540 0.85392 0.89913 0.91757 1.44194 1.01448 1.09111 1.81193 1.21381 0.87964 0.86556 1.03558 1.21105 0.89269 0.86121 1.02517 1.44783 1.03486 1.10428 1.80237 1.15884 0.82223 0.83491 0.77604 1.90880 1.71405 1.29271 1.59893 1.47408 1.07231 1.05321 1.76459 1.21591 0.78317 0.99990 0.97943 1.22365 1.00631 0.88616 0.95625 1.61994 1.05758 1.09049 1.49441 1.19383 0.95053 0.90714 0.86689 1.21509 0.94135 1.28361 1.12036 0.91637 1.25875 1.03480 0.95423 0.94745 1.70088 1.38000 1.32430 1.16967 0.85366 0.79218 0.78006 0.78232 1.18595 1.20806 1.20437 1.22548 0.88681 1.01058 0.97011 1.21890 0.97455 0.81596 0.98701 1.67107 1.09874 1.30470 1.21598 1.22669 0.87974 0.98859 0.93179 0.90994 0.90819 0.90813 0.82696 0.83335 0.75940 0.89542 0.90016 0.92095 0.91475 0.74842 0.90210 0.89712 0.97245 0.90281 1.02417 0.96957 0.92763 0.96270 0.89121 0.86857 0.89324 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 10.03 71.24 0.71 0.07 16 2 C -0.20 -2.52 5.90 -19.76 -0.12 -2.64 16 3 C -0.04 -0.47 9.85 22.44 0.22 -0.25 16 4 C -0.24 -3.29 9.33 22.50 0.21 -3.08 16 5 C 0.38 6.68 7.65 133.07 1.02 7.69 16 6 N -0.73 -10.61 5.73 -345.07 -1.98 -12.59 16 7 C 0.13 1.35 5.01 86.38 0.43 1.78 16 8 C 0.13 2.10 5.79 86.38 0.50 2.60 16 9 N -0.73 -12.99 5.47 -478.54 -2.62 -15.61 16 10 C 0.71 19.60 8.31 179.05 1.49 21.09 16 11 O -0.63 -22.81 15.83 -3.97 -0.06 -22.88 16 12 N -0.63 -17.21 3.00 -835.04 -2.51 -19.72 16 13 C 0.15 4.59 6.61 86.50 0.57 5.16 16 14 C 0.06 2.17 5.47 86.54 0.47 2.64 16 15 N -0.54 -21.66 4.62 -898.90 -4.15 -25.81 16 16 C 0.21 10.64 4.72 85.56 0.40 11.04 16 17 C -0.52 -28.69 8.41 25.60 0.22 -28.47 16 18 H 0.07 3.52 7.13 -2.91 -0.02 3.50 16 19 C 0.00 0.16 5.46 84.65 0.46 0.62 16 20 N -0.93 -55.19 13.29 21.45 0.28 -54.91 16 21 Si 0.97 43.53 29.54 68.60 2.03 45.56 16 22 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 25 C 0.04 1.10 5.62 86.38 0.49 1.59 16 26 C 0.13 2.75 6.59 86.35 0.57 3.32 16 27 N -0.57 -11.47 10.39 -193.26 -2.01 -13.48 16 28 C 0.13 2.01 10.85 84.62 0.92 2.93 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.36 8.09 -2.39 -0.02 0.34 16 31 H 0.07 0.35 8.09 -2.39 -0.02 0.33 16 32 H 0.16 0.99 8.06 -2.91 -0.02 0.96 16 33 H 0.15 1.36 6.71 -2.91 -0.02 1.34 16 34 H 0.41 6.10 8.60 -92.70 -0.80 5.31 16 35 H 0.09 0.66 7.93 -2.39 -0.02 0.64 16 36 H 0.08 0.71 7.93 -2.39 -0.02 0.69 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.41 4.68 5.97 -92.71 -0.55 4.13 16 40 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.08 2.77 7.09 -2.39 -0.02 2.75 16 42 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.08 3.27 6.67 -2.39 -0.02 3.26 16 44 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 45 H 0.01 0.67 7.97 -2.39 -0.02 0.65 16 46 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 47 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.09 2.61 7.99 -2.39 -0.02 2.59 16 49 H 0.11 1.47 5.64 -2.39 -0.01 1.46 16 50 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 51 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -75.38 410.11 -2.85 -78.23 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -0.40 Total: 15.10 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 8.57 Total: 26.10 kcal Atomic # 7 Polarization: -129.14 SS G_CDS: -12.98 Total: -142.11 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.06 Total: -22.88 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -75.38 -2.85 -78.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927473087.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.195 kcal (2) G-P(sol) polarization free energy of solvation -75.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds