Wall clock time and date at job start Wed Apr 1 2020 04:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35243 * 126.07106 * 2 1 4 4 C 1.40403 * 107.86626 * 180.02562 * 3 2 1 5 5 N 1.40200 * 125.97199 * 180.26329 * 4 3 2 6 6 C 1.34776 * 119.99633 * 359.71918 * 5 4 3 7 7 O 1.21588 * 120.00172 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99433 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99920 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.64400 * 36.69598 * 9 8 6 11 11 C 1.54938 * 110.72506 * 273.54783 * 9 8 6 12 12 N 1.48529 * 103.22888 * 204.22756 * 11 9 8 13 13 C 1.46896 * 111.00400 * 159.71723 * 12 11 9 14 14 C 1.53000 * 117.50048 * 128.61596 * 13 12 11 15 15 C 1.53006 * 117.49687 * 59.95692 * 13 12 11 16 16 C 1.47907 * 105.82023 * 39.20259 * 12 11 9 17 17 C 1.53988 * 107.05769 * 334.66964 * 16 12 11 18 18 H 1.09005 * 110.30510 * 120.14235 * 17 16 12 19 19 C 1.52995 * 110.31084 * 242.30928 * 17 16 12 20 20 N 1.31214 * 108.05583 * 0.02562 * 4 3 2 21 21 N 1.34966 * 126.07014 * 180.02562 * 2 1 3 22 22 C 1.46501 * 125.97694 * 359.95591 * 21 2 1 23 23 C 1.50704 * 109.46910 * 270.00151 * 22 21 2 24 24 H 1.07999 * 119.99936 * 359.97438 * 23 22 21 25 25 C 1.37874 * 119.99785 * 179.97438 * 23 22 21 26 26 N 1.31515 * 120.00511 * 0.02562 * 25 23 22 27 27 Si 1.86810 * 119.99770 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46676 * 60.00836 * 27 25 23 29 29 H 1.48497 * 109.47019 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47184 * 300.00560 * 27 25 23 31 31 H 1.09006 * 109.46874 * 269.97053 * 1 2 3 32 32 H 1.09001 * 109.47276 * 29.96714 * 1 2 3 33 33 H 1.09007 * 109.47592 * 149.97143 * 1 2 3 34 34 H 1.07997 * 126.06934 * 0.05241 * 3 2 1 35 35 H 0.97002 * 119.99888 * 179.71746 * 5 4 3 36 36 H 0.96998 * 120.00624 * 359.97438 * 8 6 5 37 37 H 1.09009 * 110.66281 * 322.66153 * 11 9 8 38 38 H 1.08997 * 110.67154 * 85.78864 * 11 9 8 39 39 H 1.09001 * 115.55197 * 274.29291 * 13 12 11 40 40 H 1.08996 * 117.49767 * 0.02562 * 14 13 12 41 41 H 1.09003 * 117.49785 * 145.02147 * 14 13 12 42 42 H 1.09002 * 117.49934 * 214.97946 * 15 13 12 43 43 H 1.08998 * 117.49605 * 359.97438 * 15 13 12 44 44 H 1.08999 * 109.91525 * 94.02596 * 16 12 11 45 45 H 1.09003 * 109.91645 * 215.31880 * 16 12 11 46 46 H 1.09004 * 109.47352 * 175.71929 * 19 17 16 47 47 H 1.09003 * 109.47337 * 295.71613 * 19 17 16 48 48 H 1.08997 * 109.47074 * 55.71801 * 19 17 16 49 49 H 1.09001 * 109.47134 * 29.99838 * 22 21 2 50 50 H 1.08997 * 109.47405 * 150.00333 * 22 21 2 51 51 H 0.97000 * 120.00162 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6545 -0.0006 5 7 4.7738 1.4751 0.0044 6 6 4.6370 2.8159 0.0048 7 8 3.5277 3.3138 0.0012 8 7 5.7298 3.6046 0.0101 9 6 5.5812 5.0621 0.0110 10 1 4.7260 5.3608 0.6174 11 6 5.4423 5.6000 -1.4353 12 7 5.9029 7.0074 -1.3202 13 6 6.2990 7.5406 -2.6304 14 6 5.6913 8.8765 -3.0626 15 6 5.2352 7.5764 -3.7296 16 6 7.0520 6.9808 -0.3893 17 6 6.8757 5.7438 0.5106 18 1 7.7254 5.0703 0.3986 19 6 6.7222 6.1681 1.9725 20 7 3.6336 -0.6576 -0.0015 21 7 2.3016 -1.0909 -0.0005 22 6 1.8500 -2.4846 -0.0002 23 6 1.6961 -2.9624 1.4208 24 1 1.9133 -2.2949 2.2415 25 6 1.2779 -4.2518 1.6730 26 7 1.0138 -5.0649 0.6736 27 14 1.0877 -4.8443 3.4344 28 1 0.0879 -3.9993 4.1355 29 1 0.6299 -6.2569 3.4347 30 1 2.3945 -4.7478 4.1329 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8903 -0.5133 33 1 -0.3634 -0.8898 -0.5143 34 1 1.9720 2.1211 0.0008 35 1 5.6587 1.0778 0.0077 36 1 6.6147 3.2074 0.0141 37 1 6.0827 5.0402 -2.1171 38 1 4.4033 5.5608 -1.7623 39 1 7.3263 7.3343 -2.9308 40 1 4.9978 9.3600 -2.3746 41 1 6.3187 9.5491 -3.6477 42 1 5.5628 7.3941 -4.7531 43 1 4.2416 7.2039 -3.4805 44 1 7.9829 6.9020 -0.9508 45 1 7.0577 7.8850 0.2194 46 1 6.5226 5.2900 2.5868 47 1 7.6415 6.6465 2.3105 48 1 5.8932 6.8701 2.0620 49 1 0.8910 -2.5559 -0.5134 50 1 2.5843 -3.1046 -0.5144 51 1 0.7193 -5.9719 0.8511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930632898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:09 Heat of formation + Delta-G solvation = 84.495243 kcal Electronic energy + Delta-G solvation = -30117.872626 eV Core-core repulsion = 26054.982585 eV Total energy + Delta-G solvation = -4062.890040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.84854 -40.18748 -39.11647 -36.89659 -34.77290 -34.04744 -33.28245 -32.12678 -31.36916 -30.76502 -28.57631 -26.59562 -26.29323 -26.00139 -23.52844 -22.79116 -22.50152 -21.35911 -20.84756 -20.72029 -19.74646 -19.51308 -17.72631 -17.09743 -16.66555 -16.50046 -15.92531 -15.50190 -15.25323 -14.82752 -14.58911 -14.46576 -14.30825 -14.02784 -14.01628 -13.96104 -13.52111 -12.99698 -12.71949 -12.45740 -12.43253 -12.30166 -12.25401 -12.15915 -11.81571 -11.70161 -11.53774 -11.43453 -11.37039 -11.09602 -11.02752 -10.79983 -10.73138 -10.49811 -10.42580 -10.23057 -9.99624 -9.64779 -9.53334 -9.24818 -8.78594 -8.62492 -7.89077 -7.38317 -6.23747 -4.31318 2.33221 2.66440 3.10221 3.24282 3.27952 3.31487 3.34465 3.47542 3.68437 3.84338 4.13055 4.27970 4.29015 4.36412 4.46238 4.57989 4.63211 4.84184 4.97501 4.99164 5.08304 5.09775 5.12595 5.30599 5.34114 5.42240 5.46880 5.56518 5.59291 5.66552 5.70723 5.72832 5.76084 5.86464 5.90345 5.95182 6.14558 6.19113 6.25227 6.47913 6.49184 6.63672 6.64872 6.70616 6.97028 7.07451 7.15155 7.54665 7.68822 7.90846 7.95616 8.09539 8.60100 8.69623 8.77710 9.34777 10.83343 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020647 B = 0.001923 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.802282 B =14560.771788 C =15279.563988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.282 3.718 5 N -0.644 5.644 6 C 0.714 3.286 7 O -0.562 6.562 8 N -0.737 5.737 9 C 0.168 3.832 10 H 0.107 0.893 11 C 0.028 3.972 12 N -0.487 5.487 13 C -0.006 4.006 14 C -0.161 4.161 15 C -0.174 4.174 16 C 0.046 3.954 17 C -0.109 4.109 18 H 0.081 0.919 19 C -0.142 4.142 20 N -0.325 5.325 21 N -0.318 5.318 22 C 0.259 3.741 23 C -0.535 4.535 24 H 0.064 0.936 25 C 0.065 3.935 26 N -0.892 5.892 27 Si 0.906 3.094 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.275 1.275 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.160 0.840 35 H 0.405 0.595 36 H 0.396 0.604 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.048 0.952 45 H 0.085 0.915 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.063 0.937 49 H 0.054 0.946 50 H 0.051 0.949 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.446 24.983 -4.874 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.294 5.294 6 C 0.413 3.587 7 O -0.437 6.437 8 N -0.394 5.394 9 C 0.061 3.939 10 H 0.125 0.875 11 C -0.101 4.101 12 N -0.211 5.211 13 C -0.116 4.116 14 C -0.199 4.199 15 C -0.211 4.211 16 C -0.082 4.082 17 C -0.129 4.129 18 H 0.099 0.901 19 C -0.200 4.200 20 N -0.155 5.155 21 N -0.101 5.101 22 C 0.141 3.859 23 C -0.574 4.574 24 H 0.082 0.918 25 C -0.138 4.138 26 N -0.530 5.530 27 Si 0.733 3.267 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.200 1.200 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.178 0.822 35 H 0.240 0.760 36 H 0.230 0.770 37 H 0.068 0.932 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.066 0.934 45 H 0.103 0.897 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.082 0.918 49 H 0.072 0.928 50 H 0.069 0.931 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.625 24.418 -4.736 27.456 hybrid contribution 1.183 -0.783 0.559 1.525 sum 12.807 23.635 -4.176 27.205 Atomic orbital electron populations 1.20328 0.87939 1.02774 1.03140 1.21059 0.94883 0.87173 1.00963 1.21231 0.89673 0.99814 1.21252 1.18655 0.86542 0.89239 1.02699 1.41394 1.07593 1.03726 1.76647 1.15625 0.84776 0.80380 0.77944 1.90882 1.23417 1.73400 1.55983 1.45040 1.07588 1.05890 1.80845 1.21749 0.98613 0.77476 0.96014 0.87523 1.23619 1.01960 0.87646 0.96885 1.64524 1.30096 1.18776 1.07680 1.22652 0.96334 1.02168 0.90405 1.23052 1.03523 0.90475 1.02847 1.23070 0.99582 1.01872 0.96596 1.22952 0.92375 0.98320 0.94602 1.22279 0.97393 0.96733 0.96496 0.90063 1.21828 1.02182 1.01862 0.94099 1.77246 0.99961 1.08334 1.29972 1.48952 1.00883 1.07723 1.52511 1.19667 0.95933 0.71385 0.98866 1.21287 1.46751 0.97932 0.91405 0.91822 1.24925 0.94711 0.96077 0.98082 1.69909 1.44914 1.07137 1.31059 0.86416 0.78788 0.77662 0.83819 1.19928 1.20976 1.20028 0.90462 0.90830 0.90912 0.82214 0.76007 0.77004 0.93220 0.89105 0.89251 0.88051 0.88859 0.88697 0.88103 0.93412 0.89662 0.92142 0.92315 0.91757 0.92819 0.93071 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.00 0.36 -1.09 16 2 C 0.09 1.94 6.92 -82.28 -0.57 1.37 16 3 C -0.29 -6.03 9.52 -39.83 -0.38 -6.41 16 4 C 0.28 5.79 8.11 -154.35 -1.25 4.54 16 5 N -0.64 -9.99 5.46 -15.50 -0.08 -10.08 16 6 C 0.71 10.39 8.53 -86.92 -0.74 9.65 16 7 O -0.56 -10.14 13.19 5.29 0.07 -10.07 16 8 N -0.74 -7.24 5.21 -56.86 -0.30 -7.53 16 9 C 0.17 1.56 2.89 -66.07 -0.19 1.37 16 10 H 0.11 1.24 7.42 -51.93 -0.39 0.85 16 11 C 0.03 0.26 5.80 -1.90 -0.01 0.25 16 12 N -0.49 -4.12 5.43 -222.50 -1.21 -5.33 16 13 C -0.01 -0.05 5.18 -67.71 -0.35 -0.40 16 14 C -0.16 -1.10 10.46 -26.69 -0.28 -1.38 16 15 C -0.17 -1.28 9.95 -26.69 -0.27 -1.55 16 16 C 0.05 0.31 6.36 -2.75 -0.02 0.29 16 17 C -0.11 -0.72 3.32 -89.27 -0.30 -1.02 16 18 H 0.08 0.44 7.72 -51.93 -0.40 0.04 16 19 C -0.14 -0.91 8.89 37.15 0.33 -0.58 16 20 N -0.32 -7.54 12.59 31.44 0.40 -7.15 16 21 N -0.32 -7.62 3.59 -58.33 -0.21 -7.83 16 22 C 0.26 6.70 5.99 -5.19 -0.03 6.66 16 23 C -0.54 -14.83 9.39 -34.44 -0.32 -15.15 16 24 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 25 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 26 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 27 Si 0.91 21.20 29.54 -169.99 -5.02 16.18 16 28 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 31 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 1.27 7.07 -51.93 -0.37 0.90 16 34 H 0.16 3.29 5.91 -52.49 -0.31 2.98 16 35 H 0.41 5.00 8.84 -40.82 -0.36 4.64 16 36 H 0.40 2.73 8.35 -40.82 -0.34 2.39 16 37 H 0.05 0.47 8.02 -51.92 -0.42 0.05 16 38 H 0.09 1.04 8.08 -51.93 -0.42 0.63 16 39 H 0.09 0.62 7.68 -51.93 -0.40 0.22 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 0.85 8.06 -51.93 -0.42 0.43 16 44 H 0.05 0.29 7.49 -51.93 -0.39 -0.10 16 45 H 0.09 0.55 7.68 -51.93 -0.40 0.15 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.05 1.37 7.04 -51.93 -0.37 1.00 16 50 H 0.05 1.41 8.14 -51.93 -0.42 0.98 16 51 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 415.24 15.07 6.26 6.26 Total: -1.00 -32.59 415.24 -11.79 -44.39 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -8.32 Total: 7.34 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -4.11 Total: -1.76 kcal Atomic # 7 Polarization: -61.66 SS G_CDS: -0.67 Total: -62.33 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.59 -11.79 -44.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.880 kcal (2) G-P(sol) polarization free energy of solvation -32.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds