Wall clock time and date at job start Wed Apr 1 2020 04:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35243 * 126.07106 * 2 1 4 4 C 1.40403 * 107.86626 * 180.02562 * 3 2 1 5 5 N 1.40200 * 125.97199 * 180.26329 * 4 3 2 6 6 C 1.34776 * 119.99633 * 359.71918 * 5 4 3 7 7 O 1.21588 * 120.00172 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99433 * 179.97438 * 6 5 4 9 9 C 1.46503 * 119.99920 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.64400 * 36.69598 * 9 8 6 11 11 C 1.54938 * 110.72506 * 273.54783 * 9 8 6 12 12 N 1.48529 * 103.22888 * 204.22756 * 11 9 8 13 13 C 1.46896 * 111.00400 * 159.71723 * 12 11 9 14 14 C 1.53000 * 117.50048 * 128.61596 * 13 12 11 15 15 C 1.53006 * 117.49687 * 59.95692 * 13 12 11 16 16 C 1.47907 * 105.82023 * 39.20259 * 12 11 9 17 17 C 1.53988 * 107.05769 * 334.66964 * 16 12 11 18 18 H 1.09005 * 110.30510 * 120.14235 * 17 16 12 19 19 C 1.52995 * 110.31084 * 242.30928 * 17 16 12 20 20 N 1.31214 * 108.05583 * 0.02562 * 4 3 2 21 21 N 1.34966 * 126.07014 * 180.02562 * 2 1 3 22 22 C 1.46501 * 125.97694 * 359.95591 * 21 2 1 23 23 C 1.50704 * 109.46910 * 270.00151 * 22 21 2 24 24 H 1.07999 * 119.99936 * 359.97438 * 23 22 21 25 25 C 1.37874 * 119.99785 * 179.97438 * 23 22 21 26 26 N 1.31515 * 120.00511 * 0.02562 * 25 23 22 27 27 Si 1.86810 * 119.99770 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.46676 * 60.00836 * 27 25 23 29 29 H 1.48497 * 109.47019 * 180.02562 * 27 25 23 30 30 H 1.48493 * 109.47184 * 300.00560 * 27 25 23 31 31 H 1.09006 * 109.46874 * 269.97053 * 1 2 3 32 32 H 1.09001 * 109.47276 * 29.96714 * 1 2 3 33 33 H 1.09007 * 109.47592 * 149.97143 * 1 2 3 34 34 H 1.07997 * 126.06934 * 0.05241 * 3 2 1 35 35 H 0.97002 * 119.99888 * 179.71746 * 5 4 3 36 36 H 0.96998 * 120.00624 * 359.97438 * 8 6 5 37 37 H 1.09009 * 110.66281 * 322.66153 * 11 9 8 38 38 H 1.08997 * 110.67154 * 85.78864 * 11 9 8 39 39 H 1.09001 * 115.55197 * 274.29291 * 13 12 11 40 40 H 1.08996 * 117.49767 * 0.02562 * 14 13 12 41 41 H 1.09003 * 117.49785 * 145.02147 * 14 13 12 42 42 H 1.09002 * 117.49934 * 214.97946 * 15 13 12 43 43 H 1.08998 * 117.49605 * 359.97438 * 15 13 12 44 44 H 1.08999 * 109.91525 * 94.02596 * 16 12 11 45 45 H 1.09003 * 109.91645 * 215.31880 * 16 12 11 46 46 H 1.09004 * 109.47352 * 175.71929 * 19 17 16 47 47 H 1.09003 * 109.47337 * 295.71613 * 19 17 16 48 48 H 1.08997 * 109.47074 * 55.71801 * 19 17 16 49 49 H 1.09001 * 109.47134 * 29.99838 * 22 21 2 50 50 H 1.08997 * 109.47405 * 150.00333 * 22 21 2 51 51 H 0.97000 * 120.00162 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6370 0.6545 -0.0006 5 7 4.7738 1.4751 0.0044 6 6 4.6370 2.8159 0.0048 7 8 3.5277 3.3138 0.0012 8 7 5.7298 3.6046 0.0101 9 6 5.5812 5.0621 0.0110 10 1 4.7260 5.3608 0.6174 11 6 5.4423 5.6000 -1.4353 12 7 5.9029 7.0074 -1.3202 13 6 6.2990 7.5406 -2.6304 14 6 5.6913 8.8765 -3.0626 15 6 5.2352 7.5764 -3.7296 16 6 7.0520 6.9808 -0.3893 17 6 6.8757 5.7438 0.5106 18 1 7.7254 5.0703 0.3986 19 6 6.7222 6.1681 1.9725 20 7 3.6336 -0.6576 -0.0015 21 7 2.3016 -1.0909 -0.0005 22 6 1.8500 -2.4846 -0.0002 23 6 1.6961 -2.9624 1.4208 24 1 1.9133 -2.2949 2.2415 25 6 1.2779 -4.2518 1.6730 26 7 1.0138 -5.0649 0.6736 27 14 1.0877 -4.8443 3.4344 28 1 0.0879 -3.9993 4.1355 29 1 0.6299 -6.2569 3.4347 30 1 2.3945 -4.7478 4.1329 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3634 0.8903 -0.5133 33 1 -0.3634 -0.8898 -0.5143 34 1 1.9720 2.1211 0.0008 35 1 5.6587 1.0778 0.0077 36 1 6.6147 3.2074 0.0141 37 1 6.0827 5.0402 -2.1171 38 1 4.4033 5.5608 -1.7623 39 1 7.3263 7.3343 -2.9308 40 1 4.9978 9.3600 -2.3746 41 1 6.3187 9.5491 -3.6477 42 1 5.5628 7.3941 -4.7531 43 1 4.2416 7.2039 -3.4805 44 1 7.9829 6.9020 -0.9508 45 1 7.0577 7.8850 0.2194 46 1 6.5226 5.2900 2.5868 47 1 7.6415 6.6465 2.3105 48 1 5.8932 6.8701 2.0620 49 1 0.8910 -2.5559 -0.5134 50 1 2.5843 -3.1046 -0.5144 51 1 0.7193 -5.9719 0.8511 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930632898.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:07 Heat of formation + Delta-G solvation = 63.020315 kcal Electronic energy + Delta-G solvation = -30118.803848 eV Core-core repulsion = 26054.982585 eV Total energy + Delta-G solvation = -4063.821263 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.32355 -41.29185 -40.09240 -37.58012 -36.28307 -35.35031 -34.87563 -32.98150 -32.71397 -32.54042 -29.49137 -28.39960 -27.85049 -26.62180 -25.12175 -23.95776 -23.18090 -22.44955 -21.69253 -21.40116 -21.16233 -20.88769 -18.99771 -18.74654 -18.01030 -17.49269 -17.16929 -16.80981 -16.67142 -16.17942 -15.88612 -15.57714 -15.35533 -15.28024 -14.80788 -14.74584 -14.54964 -14.33017 -14.15599 -13.79374 -13.70013 -13.52232 -13.35360 -13.14439 -13.06026 -12.91313 -12.84635 -12.65382 -12.37345 -12.30692 -12.21300 -12.08828 -11.98506 -11.67360 -11.56190 -11.35935 -11.30631 -11.14660 -11.04831 -10.72476 -10.21768 -9.55839 -9.40908 -9.07297 -8.31501 -6.49324 1.01683 1.09619 1.38658 1.40198 1.49189 1.66437 2.04836 2.35609 2.38034 2.74494 2.90981 2.97819 3.18741 3.52886 3.60716 3.86795 3.89475 4.01504 4.05957 4.17902 4.21720 4.31163 4.33700 4.44939 4.53217 4.57455 4.72677 4.74704 4.78149 4.79754 4.85633 4.88331 4.90384 4.98887 4.99419 5.02179 5.06938 5.08715 5.10286 5.17375 5.22972 5.30356 5.36800 5.46001 5.54572 5.82089 5.83678 5.86740 5.98165 6.11577 6.27970 6.62139 6.74676 7.13352 7.21396 7.42274 8.73926 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020647 B = 0.001923 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.802282 B =14560.771788 C =15279.563988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 C -0.298 4.298 4 C 0.293 3.707 5 N -0.635 5.635 6 C 0.713 3.287 7 O -0.597 6.597 8 N -0.712 5.712 9 C 0.166 3.834 10 H 0.082 0.918 11 C 0.035 3.965 12 N -0.499 5.499 13 C -0.013 4.013 14 C -0.154 4.154 15 C -0.181 4.181 16 C 0.047 3.953 17 C -0.098 4.098 18 H 0.103 0.897 19 C -0.140 4.140 20 N -0.360 5.360 21 N -0.343 5.343 22 C 0.275 3.725 23 C -0.553 4.553 24 H 0.049 0.951 25 C 0.023 3.977 26 N -0.918 5.918 27 Si 0.970 3.030 28 H -0.266 1.266 29 H -0.273 1.273 30 H -0.275 1.275 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.165 0.835 35 H 0.421 0.579 36 H 0.415 0.585 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.106 0.894 43 H 0.083 0.917 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.054 0.946 49 H 0.052 0.948 50 H 0.024 0.976 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.980 26.399 -4.202 30.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.044 4.044 3 C -0.328 4.328 4 C 0.038 3.962 5 N -0.287 5.287 6 C 0.412 3.588 7 O -0.474 6.474 8 N -0.369 5.369 9 C 0.060 3.940 10 H 0.100 0.900 11 C -0.094 4.094 12 N -0.224 5.224 13 C -0.122 4.122 14 C -0.191 4.191 15 C -0.219 4.219 16 C -0.081 4.081 17 C -0.118 4.118 18 H 0.121 0.879 19 C -0.198 4.198 20 N -0.190 5.190 21 N -0.126 5.126 22 C 0.157 3.843 23 C -0.591 4.591 24 H 0.068 0.932 25 C -0.178 4.178 26 N -0.556 5.556 27 Si 0.794 3.206 28 H -0.191 1.191 29 H -0.197 1.197 30 H -0.201 1.201 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.183 0.817 35 H 0.259 0.741 36 H 0.252 0.748 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.043 0.957 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.222 25.871 -4.072 29.338 hybrid contribution 0.751 -1.071 0.298 1.341 sum 13.973 24.801 -3.774 28.715 Atomic orbital electron populations 1.20461 0.85438 1.04159 1.03899 1.21724 0.96617 0.86480 0.99549 1.21391 0.90013 0.99816 1.21630 1.18931 0.88040 0.88879 1.00369 1.41368 1.07069 1.03764 1.76485 1.15789 0.85339 0.80065 0.77584 1.90855 1.25249 1.73853 1.57491 1.44852 1.07217 1.05813 1.79037 1.21783 0.99549 0.76806 0.95860 0.89996 1.23422 1.00531 0.88703 0.96753 1.64492 1.31441 1.17818 1.08616 1.22784 0.96821 1.02611 0.89942 1.23089 1.03254 0.90319 1.02461 1.23072 0.98879 1.02629 0.97304 1.23009 0.92272 0.98460 0.94341 1.22255 0.96246 0.96755 0.96498 0.87915 1.21812 1.02757 1.01437 0.93753 1.77166 1.00031 1.09710 1.32124 1.48751 1.01668 1.07444 1.54702 1.19238 0.94908 0.72432 0.97762 1.21407 1.47542 0.98366 0.91785 0.93250 1.25730 0.93976 0.95933 1.02207 1.69994 1.45025 1.07547 1.33022 0.85420 0.78730 0.77667 0.78756 1.19054 1.19742 1.20080 0.89867 0.87677 0.91251 0.81745 0.74138 0.74792 0.92858 0.91859 0.87972 0.88937 0.87016 0.87538 0.89844 0.91898 0.89126 0.92937 0.90470 0.92703 0.93033 0.95750 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.80 10.11 71.23 0.72 -2.08 16 2 C 0.09 3.74 6.92 41.38 0.29 4.02 16 3 C -0.30 -12.50 9.52 22.11 0.21 -12.29 16 4 C 0.29 12.09 8.11 133.31 1.08 13.17 16 5 N -0.63 -19.33 5.46 -321.23 -1.75 -21.08 16 6 C 0.71 20.34 8.53 179.06 1.53 21.87 16 7 O -0.60 -21.68 13.19 -3.99 -0.05 -21.73 16 8 N -0.71 -12.98 5.21 -452.06 -2.35 -15.33 16 9 C 0.17 2.93 2.89 46.20 0.13 3.06 16 10 H 0.08 1.92 7.42 -2.39 -0.02 1.90 16 11 C 0.03 0.65 5.80 86.65 0.50 1.15 16 12 N -0.50 -7.88 5.43 -857.85 -4.66 -12.54 16 13 C -0.01 -0.17 5.18 44.92 0.23 0.06 16 14 C -0.15 -1.88 10.46 30.62 0.32 -1.56 16 15 C -0.18 -2.57 9.95 30.62 0.30 -2.26 16 16 C 0.05 0.52 6.36 86.44 0.55 1.07 16 17 C -0.10 -1.06 3.32 -9.92 -0.03 -1.10 16 18 H 0.10 0.73 7.72 -2.38 -0.02 0.71 16 19 C -0.14 -1.51 8.89 71.98 0.64 -0.87 16 20 N -0.36 -17.06 12.59 -54.43 -0.69 -17.74 16 21 N -0.34 -16.86 3.59 -338.44 -1.22 -18.07 16 22 C 0.28 14.72 5.99 85.63 0.51 15.24 16 23 C -0.55 -31.23 9.39 25.60 0.24 -30.99 16 24 H 0.05 2.88 7.81 -2.91 -0.02 2.85 16 25 C 0.02 1.24 5.46 84.65 0.46 1.70 16 26 N -0.92 -52.06 13.29 21.45 0.28 -51.78 16 27 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 28 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 29 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 30 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 31 H 0.08 2.76 8.14 -2.38 -0.02 2.74 16 32 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 33 H 0.07 2.42 7.07 -2.38 -0.02 2.40 16 34 H 0.17 6.78 5.91 -2.91 -0.02 6.77 16 35 H 0.42 9.90 8.84 -92.71 -0.82 9.08 16 36 H 0.41 4.66 8.35 -92.71 -0.77 3.88 16 37 H 0.05 0.94 8.02 -2.38 -0.02 0.92 16 38 H 0.06 1.52 8.08 -2.39 -0.02 1.50 16 39 H 0.10 1.14 7.68 -2.39 -0.02 1.12 16 40 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.47 8.06 -2.39 -0.02 1.45 16 44 H 0.06 0.54 7.49 -2.39 -0.02 0.52 16 45 H 0.09 0.94 7.68 -2.39 -0.02 0.92 16 46 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.05 2.73 7.04 -2.39 -0.02 2.71 16 50 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 51 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -71.81 415.24 -1.36 -73.17 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.64 Total: 29.65 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: 7.69 Total: 10.18 kcal Atomic # 7 Polarization: -126.16 SS G_CDS: -10.38 Total: -136.55 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -71.81 -1.36 -73.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632898.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.187 kcal (2) G-P(sol) polarization free energy of solvation -71.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds