Wall clock time and date at job start Wed Apr 1 2020 04:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35247 * 126.06524 * 2 1 4 4 C 1.40403 * 107.86615 * 180.26668 * 3 2 1 5 5 N 1.40200 * 125.96878 * 180.02562 * 4 3 2 6 6 C 1.34771 * 120.00509 * 359.94694 * 5 4 3 7 7 O 1.21592 * 119.99548 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00218 * 180.02562 * 6 5 4 9 9 C 1.46494 * 119.99936 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.27943 * 327.09080 * 9 8 6 11 11 C 1.53993 * 110.30947 * 89.28455 * 9 8 6 12 12 N 1.47906 * 107.06240 * 120.14032 * 11 9 8 13 13 C 1.46897 * 111.00119 * 214.15981 * 12 11 9 14 14 C 1.52997 * 117.49721 * 254.27025 * 13 12 11 15 15 C 1.53005 * 117.49460 * 185.64741 * 13 12 11 16 16 C 1.48541 * 105.81684 * 334.67375 * 12 11 9 17 17 C 1.54595 * 110.30870 * 204.99899 * 9 8 6 18 18 H 1.09007 * 110.72452 * 144.68567 * 17 9 8 19 19 C 1.52993 * 110.72302 * 21.57942 * 17 9 8 20 20 N 1.31205 * 108.05633 * 359.97438 * 4 3 2 21 21 N 1.34961 * 126.07816 * 180.31480 * 2 1 3 22 22 C 1.46504 * 125.97246 * 359.75508 * 21 2 1 23 23 C 1.50700 * 109.47313 * 89.99958 * 22 21 2 24 24 H 1.08005 * 119.99707 * 0.02562 * 23 22 21 25 25 C 1.37874 * 119.99987 * 179.97438 * 23 22 21 26 26 N 1.31516 * 119.99524 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00169 * 0.02562 * 25 23 22 28 28 H 1.48495 * 109.47125 * 90.00061 * 27 25 23 29 29 H 1.48502 * 109.47009 * 210.00256 * 27 25 23 30 30 H 1.48500 * 109.46833 * 329.99936 * 27 25 23 31 31 H 1.09002 * 109.46846 * 269.68451 * 1 2 3 32 32 H 1.09000 * 109.47626 * 29.68798 * 1 2 3 33 33 H 1.09005 * 109.46837 * 149.68679 * 1 2 3 34 34 H 1.08003 * 126.06708 * 0.23326 * 3 2 1 35 35 H 0.97000 * 119.99671 * 179.97438 * 5 4 3 36 36 H 0.97000 * 119.99961 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.92118 * 239.48917 * 11 9 8 38 38 H 1.09001 * 109.91875 * 0.78576 * 11 9 8 39 39 H 1.08992 * 115.55323 * 39.97864 * 13 12 11 40 40 H 1.09006 * 117.49867 * 359.97438 * 14 13 12 41 41 H 1.08994 * 117.50194 * 145.02347 * 14 13 12 42 42 H 1.08999 * 117.49449 * 214.97221 * 15 13 12 43 43 H 1.08994 * 117.50307 * 359.97438 * 15 13 12 44 44 H 1.09003 * 110.66152 * 280.77239 * 16 12 11 45 45 H 1.08990 * 110.80998 * 157.71241 * 16 12 11 46 46 H 1.09001 * 109.47308 * 60.00369 * 19 17 9 47 47 H 1.09008 * 109.47480 * 179.97438 * 19 17 9 48 48 H 1.08994 * 109.47531 * 300.00014 * 19 17 9 49 49 H 1.08999 * 109.46965 * 210.00443 * 22 21 2 50 50 H 1.09004 * 109.46795 * 329.99955 * 22 21 2 51 51 H 0.97003 * 119.99359 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0933 0.0000 4 6 3.6370 0.6548 -0.0062 5 7 4.7736 1.4755 -0.0077 6 6 4.6368 2.8163 -0.0041 7 8 3.5275 3.3141 0.0010 8 7 5.7295 3.6052 -0.0061 9 6 5.5807 5.0626 -0.0027 10 1 4.6866 5.3523 -0.5547 11 6 5.5132 5.5896 1.4427 12 7 6.6452 6.5254 1.6167 13 6 7.1755 6.4616 2.9852 14 6 6.8492 7.6247 3.9241 15 6 8.2655 7.4648 3.3678 16 6 7.6718 6.1074 0.6279 17 6 6.8314 5.7310 -0.6181 18 1 6.5548 6.6230 -1.1804 19 6 7.5891 4.7449 -1.5093 20 7 3.6337 -0.6573 -0.0092 21 7 2.3018 -1.0908 -0.0060 22 6 1.8503 -2.4845 -0.0086 23 6 1.6905 -2.9582 -1.4302 24 1 1.9044 -2.2882 -2.2499 25 6 1.2724 -4.2472 -1.6845 26 7 1.1335 -4.6606 -2.9253 27 14 0.9033 -5.4062 -0.2669 28 1 -0.5266 -5.2823 0.1143 29 1 1.1853 -6.8034 -0.6835 30 1 1.7577 -5.0542 0.8955 31 1 -0.3633 -0.0057 1.0277 32 1 -0.3634 0.8927 -0.5090 33 1 -0.3633 -0.8872 -0.5187 34 1 1.9718 2.1212 0.0036 35 1 5.6586 1.0783 -0.0118 36 1 6.6145 3.2080 -0.0098 37 1 4.5707 6.1130 1.6035 38 1 5.6052 4.7609 2.1448 39 1 7.2342 5.4642 3.4205 40 1 6.2414 8.4374 3.5263 41 1 6.6931 7.3925 4.9776 42 1 9.0411 7.1274 4.0554 43 1 8.5894 8.1718 2.6041 44 1 8.2275 5.2433 0.9924 45 1 8.3489 6.9308 0.4011 46 1 6.9371 4.4087 -2.3155 47 1 8.4653 5.2366 -1.9323 48 1 7.9047 3.8871 -0.9156 49 1 2.5867 -3.1059 0.5009 50 1 0.8934 -2.5574 0.5084 51 1 0.8390 -5.5674 -3.1041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930632900.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:18 Heat of formation + Delta-G solvation = 95.697799 kcal Electronic energy + Delta-G solvation = -30288.309642 eV Core-core repulsion = 26225.905381 eV Total energy + Delta-G solvation = -4062.404261 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.97305 -40.31944 -39.09088 -36.98939 -34.83380 -33.92448 -33.21510 -32.17009 -31.45159 -31.06567 -28.63019 -26.98802 -26.39388 -26.33821 -23.26891 -22.68837 -22.44996 -21.73614 -20.80311 -20.14325 -19.91416 -19.59201 -18.00653 -17.10988 -16.81941 -16.58605 -15.91385 -15.63862 -15.34119 -15.28141 -14.72071 -14.58851 -14.40315 -14.22118 -13.82038 -13.62863 -13.21764 -13.15872 -12.97797 -12.57108 -12.43391 -12.40547 -12.33865 -12.19405 -11.97580 -11.89324 -11.62812 -11.55023 -11.31936 -11.19111 -11.06599 -10.81044 -10.76835 -10.57262 -10.43622 -10.06096 -9.95546 -9.73178 -9.57957 -9.36602 -8.79360 -8.78576 -7.97367 -7.43410 -6.26312 -4.29342 2.30689 2.57914 3.04061 3.14201 3.22067 3.23273 3.34340 3.39509 3.57811 3.78284 4.07423 4.21334 4.24758 4.29700 4.47602 4.56312 4.63897 4.86501 4.94770 5.00581 5.01850 5.04894 5.17911 5.24878 5.28179 5.33489 5.37223 5.41669 5.57523 5.63094 5.69805 5.72236 5.75552 5.80495 5.82250 5.88585 6.04476 6.13910 6.21682 6.37996 6.45204 6.49629 6.50142 6.62238 6.69608 6.80012 7.03778 7.29333 7.46620 7.87029 7.89355 8.31885 8.55972 8.60784 8.79615 9.28979 10.86156 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.001935 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.008124 B =14466.444150 C =14821.298878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.094 3.906 3 C -0.285 4.285 4 C 0.286 3.714 5 N -0.644 5.644 6 C 0.713 3.287 7 O -0.563 6.563 8 N -0.738 5.738 9 C 0.158 3.842 10 H 0.105 0.895 11 C 0.029 3.971 12 N -0.489 5.489 13 C -0.007 4.007 14 C -0.161 4.161 15 C -0.171 4.171 16 C 0.041 3.959 17 C -0.103 4.103 18 H 0.098 0.902 19 C -0.143 4.143 20 N -0.322 5.322 21 N -0.318 5.318 22 C 0.232 3.768 23 C -0.540 4.540 24 H 0.081 0.919 25 C 0.078 3.922 26 N -0.886 5.886 27 Si 0.873 3.127 28 H -0.271 1.271 29 H -0.280 1.280 30 H -0.264 1.264 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.162 0.838 35 H 0.406 0.594 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.047 0.953 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.054 0.946 49 H 0.049 0.951 50 H 0.045 0.955 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.543 23.086 10.018 28.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 C -0.316 4.316 4 C 0.033 3.967 5 N -0.294 5.294 6 C 0.412 3.588 7 O -0.438 6.438 8 N -0.396 5.396 9 C 0.052 3.948 10 H 0.123 0.877 11 C -0.100 4.100 12 N -0.213 5.213 13 C -0.116 4.116 14 C -0.199 4.199 15 C -0.208 4.208 16 C -0.086 4.086 17 C -0.122 4.122 18 H 0.116 0.884 19 C -0.201 4.201 20 N -0.152 5.152 21 N -0.100 5.100 22 C 0.113 3.887 23 C -0.579 4.579 24 H 0.099 0.901 25 C -0.126 4.126 26 N -0.523 5.523 27 Si 0.699 3.301 28 H -0.196 1.196 29 H -0.205 1.205 30 H -0.188 1.188 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.180 0.820 35 H 0.240 0.760 36 H 0.232 0.768 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.063 0.937 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 12.982 22.751 9.821 27.975 hybrid contribution 0.589 -1.409 0.757 1.705 sum 13.571 21.342 10.578 27.414 Atomic orbital electron populations 1.20402 0.87867 1.04175 1.02426 1.21059 0.94905 0.86969 1.00735 1.21262 0.89649 0.99881 1.20814 1.18646 0.86627 0.89178 1.02296 1.41400 1.07537 1.03774 1.76678 1.15647 0.84853 0.80361 0.77907 1.90877 1.23476 1.73400 1.56061 1.45294 1.07611 1.06077 1.80645 1.21640 0.99732 0.77845 0.95576 0.87712 1.23377 0.95415 0.94800 0.96418 1.64600 1.06400 1.48318 1.01977 1.22621 1.03741 0.94424 0.90798 1.23024 0.98308 1.00377 0.98195 1.23001 0.92154 1.02216 1.03434 1.23265 0.94379 0.99627 0.91316 1.22398 0.94451 0.99366 0.96029 0.88396 1.21711 1.00394 0.98460 0.99522 1.77242 0.99451 1.08463 1.30029 1.48481 1.01161 1.06952 1.53444 1.19978 0.95250 0.73817 0.99652 1.21189 1.47286 0.98985 0.90411 0.90104 1.24814 0.94516 0.97459 0.95783 1.69879 1.45641 1.18240 1.18569 0.86903 0.79435 0.80981 0.82830 1.19606 1.20524 1.18819 0.91122 0.90356 0.89869 0.82020 0.76002 0.76806 0.89219 0.92743 0.89474 0.88050 0.88790 0.88785 0.88329 0.93483 0.89836 0.91538 0.91930 0.92748 0.93281 0.93681 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.89 36.01 0.36 -1.16 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -5.84 9.52 -39.83 -0.38 -6.22 16 4 C 0.29 5.78 8.11 -154.36 -1.25 4.52 16 5 N -0.64 -9.84 5.45 -15.51 -0.08 -9.93 16 6 C 0.71 10.19 8.53 -86.93 -0.74 9.45 16 7 O -0.56 -9.96 13.12 5.29 0.07 -9.89 16 8 N -0.74 -7.12 4.39 -57.35 -0.25 -7.37 16 9 C 0.16 1.41 3.22 -66.58 -0.21 1.20 16 10 H 0.10 1.12 7.56 -51.93 -0.39 0.73 16 11 C 0.03 0.27 6.50 -2.75 -0.02 0.25 16 12 N -0.49 -3.92 5.42 -222.50 -1.21 -5.13 16 13 C -0.01 -0.05 4.96 -67.71 -0.34 -0.39 16 14 C -0.16 -1.10 10.46 -26.73 -0.28 -1.38 16 15 C -0.17 -1.05 10.19 -26.73 -0.27 -1.32 16 16 C 0.04 0.27 5.79 -1.89 -0.01 0.26 16 17 C -0.10 -0.67 3.62 -88.76 -0.32 -0.99 16 18 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 19 C -0.14 -0.82 8.49 37.15 0.32 -0.50 16 20 N -0.32 -7.32 12.59 31.44 0.40 -6.92 16 21 N -0.32 -7.41 3.59 -58.32 -0.21 -7.62 16 22 C 0.23 5.60 4.88 -5.19 -0.03 5.57 16 23 C -0.54 -15.14 9.94 -34.44 -0.34 -15.48 16 24 H 0.08 2.57 8.06 -52.48 -0.42 2.14 16 25 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 26 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 27 Si 0.87 20.12 27.47 -169.99 -4.67 15.45 16 28 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 30 H -0.26 -5.83 6.54 56.52 0.37 -5.46 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.50 7.72 -51.93 -0.40 1.10 16 34 H 0.16 3.26 5.91 -52.48 -0.31 2.95 16 35 H 0.41 4.94 8.84 -40.82 -0.36 4.58 16 36 H 0.40 2.87 6.47 -40.82 -0.26 2.61 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.56 7.36 -51.93 -0.38 0.18 16 39 H 0.09 0.69 7.83 -51.93 -0.41 0.28 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.30 7.91 -51.93 -0.41 -0.11 16 45 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.30 8.14 -51.92 -0.42 -0.12 16 48 H 0.05 0.28 6.26 -51.93 -0.33 -0.05 16 49 H 0.05 1.19 7.20 -51.93 -0.37 0.82 16 50 H 0.05 1.00 7.08 -51.93 -0.37 0.63 16 51 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 409.31 15.07 6.17 6.17 Total: -1.00 -33.60 409.31 -11.44 -45.03 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -8.23 Total: 8.44 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -4.19 Total: -2.71 kcal Atomic # 7 Polarization: -61.91 SS G_CDS: -0.58 Total: -62.49 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.07 Total: -9.89 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.67 Total: 15.45 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.60 -11.44 -45.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632900.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.731 kcal (2) G-P(sol) polarization free energy of solvation -33.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds