Wall clock time and date at job start Wed Apr 1 2020 04:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35247 * 126.06524 * 2 1 4 4 C 1.40403 * 107.86615 * 180.26668 * 3 2 1 5 5 N 1.40200 * 125.96878 * 180.02562 * 4 3 2 6 6 C 1.34771 * 120.00509 * 359.94694 * 5 4 3 7 7 O 1.21592 * 119.99548 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00218 * 180.02562 * 6 5 4 9 9 C 1.46494 * 119.99936 * 179.97438 * 8 6 5 10 10 H 1.09002 * 110.27943 * 327.09080 * 9 8 6 11 11 C 1.53993 * 110.30947 * 89.28455 * 9 8 6 12 12 N 1.47906 * 107.06240 * 120.14032 * 11 9 8 13 13 C 1.46897 * 111.00119 * 214.15981 * 12 11 9 14 14 C 1.52997 * 117.49721 * 254.27025 * 13 12 11 15 15 C 1.53005 * 117.49460 * 185.64741 * 13 12 11 16 16 C 1.48541 * 105.81684 * 334.67375 * 12 11 9 17 17 C 1.54595 * 110.30870 * 204.99899 * 9 8 6 18 18 H 1.09007 * 110.72452 * 144.68567 * 17 9 8 19 19 C 1.52993 * 110.72302 * 21.57942 * 17 9 8 20 20 N 1.31205 * 108.05633 * 359.97438 * 4 3 2 21 21 N 1.34961 * 126.07816 * 180.31480 * 2 1 3 22 22 C 1.46504 * 125.97246 * 359.75508 * 21 2 1 23 23 C 1.50700 * 109.47313 * 89.99958 * 22 21 2 24 24 H 1.08005 * 119.99707 * 0.02562 * 23 22 21 25 25 C 1.37874 * 119.99987 * 179.97438 * 23 22 21 26 26 N 1.31516 * 119.99524 * 180.02562 * 25 23 22 27 27 Si 1.86798 * 120.00169 * 0.02562 * 25 23 22 28 28 H 1.48495 * 109.47125 * 90.00061 * 27 25 23 29 29 H 1.48502 * 109.47009 * 210.00256 * 27 25 23 30 30 H 1.48500 * 109.46833 * 329.99936 * 27 25 23 31 31 H 1.09002 * 109.46846 * 269.68451 * 1 2 3 32 32 H 1.09000 * 109.47626 * 29.68798 * 1 2 3 33 33 H 1.09005 * 109.46837 * 149.68679 * 1 2 3 34 34 H 1.08003 * 126.06708 * 0.23326 * 3 2 1 35 35 H 0.97000 * 119.99671 * 179.97438 * 5 4 3 36 36 H 0.97000 * 119.99961 * 359.97438 * 8 6 5 37 37 H 1.09003 * 109.92118 * 239.48917 * 11 9 8 38 38 H 1.09001 * 109.91875 * 0.78576 * 11 9 8 39 39 H 1.08992 * 115.55323 * 39.97864 * 13 12 11 40 40 H 1.09006 * 117.49867 * 359.97438 * 14 13 12 41 41 H 1.08994 * 117.50194 * 145.02347 * 14 13 12 42 42 H 1.08999 * 117.49449 * 214.97221 * 15 13 12 43 43 H 1.08994 * 117.50307 * 359.97438 * 15 13 12 44 44 H 1.09003 * 110.66152 * 280.77239 * 16 12 11 45 45 H 1.08990 * 110.80998 * 157.71241 * 16 12 11 46 46 H 1.09001 * 109.47308 * 60.00369 * 19 17 9 47 47 H 1.09008 * 109.47480 * 179.97438 * 19 17 9 48 48 H 1.08994 * 109.47531 * 300.00014 * 19 17 9 49 49 H 1.08999 * 109.46965 * 210.00443 * 22 21 2 50 50 H 1.09004 * 109.46795 * 329.99955 * 22 21 2 51 51 H 0.97003 * 119.99359 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0933 0.0000 4 6 3.6370 0.6548 -0.0062 5 7 4.7736 1.4755 -0.0077 6 6 4.6368 2.8163 -0.0041 7 8 3.5275 3.3141 0.0010 8 7 5.7295 3.6052 -0.0061 9 6 5.5807 5.0626 -0.0027 10 1 4.6866 5.3523 -0.5547 11 6 5.5132 5.5896 1.4427 12 7 6.6452 6.5254 1.6167 13 6 7.1755 6.4616 2.9852 14 6 6.8492 7.6247 3.9241 15 6 8.2655 7.4648 3.3678 16 6 7.6718 6.1074 0.6279 17 6 6.8314 5.7310 -0.6181 18 1 6.5548 6.6230 -1.1804 19 6 7.5891 4.7449 -1.5093 20 7 3.6337 -0.6573 -0.0092 21 7 2.3018 -1.0908 -0.0060 22 6 1.8503 -2.4845 -0.0086 23 6 1.6905 -2.9582 -1.4302 24 1 1.9044 -2.2882 -2.2499 25 6 1.2724 -4.2472 -1.6845 26 7 1.1335 -4.6606 -2.9253 27 14 0.9033 -5.4062 -0.2669 28 1 -0.5266 -5.2823 0.1143 29 1 1.1853 -6.8034 -0.6835 30 1 1.7577 -5.0542 0.8955 31 1 -0.3633 -0.0057 1.0277 32 1 -0.3634 0.8927 -0.5090 33 1 -0.3633 -0.8872 -0.5187 34 1 1.9718 2.1212 0.0036 35 1 5.6586 1.0783 -0.0118 36 1 6.6145 3.2080 -0.0098 37 1 4.5707 6.1130 1.6035 38 1 5.6052 4.7609 2.1448 39 1 7.2342 5.4642 3.4205 40 1 6.2414 8.4374 3.5263 41 1 6.6931 7.3925 4.9776 42 1 9.0411 7.1274 4.0554 43 1 8.5894 8.1718 2.6041 44 1 8.2275 5.2433 0.9924 45 1 8.3489 6.9308 0.4011 46 1 6.9371 4.4087 -2.3155 47 1 8.4653 5.2366 -1.9323 48 1 7.9047 3.8871 -0.9156 49 1 2.5867 -3.1059 0.5009 50 1 0.8934 -2.5574 0.5084 51 1 0.8390 -5.5674 -3.1041 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930632900.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:17 Heat of formation + Delta-G solvation = 72.728378 kcal Electronic energy + Delta-G solvation = -30289.305671 eV Core-core repulsion = 26225.905381 eV Total energy + Delta-G solvation = -4063.400290 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.37665 -41.42376 -40.04904 -37.65911 -36.30404 -35.28994 -34.69538 -33.15214 -32.79470 -32.67055 -29.59606 -28.68518 -27.87543 -26.89949 -24.80276 -23.67900 -23.18985 -22.78659 -21.47234 -21.38229 -21.18205 -20.64405 -19.27838 -19.22581 -17.79539 -17.45166 -17.26151 -16.82578 -16.63908 -16.24385 -16.01406 -15.68673 -15.47087 -15.42115 -15.02779 -14.87402 -14.45812 -14.24179 -13.88093 -13.78970 -13.74008 -13.66057 -13.52471 -13.28030 -13.06321 -12.92610 -12.82828 -12.55465 -12.38010 -12.28553 -12.20394 -11.89550 -11.83965 -11.67442 -11.59193 -11.43374 -11.31163 -11.16497 -11.00032 -10.89033 -10.31358 -9.59078 -9.44023 -9.05372 -8.40133 -6.51218 0.96609 1.07383 1.35271 1.38146 1.48055 1.63537 2.03062 2.26989 2.35414 2.80191 2.83909 2.92043 3.13458 3.46482 3.63721 3.82702 3.89743 4.01801 4.09489 4.11615 4.25143 4.29159 4.38836 4.44390 4.49996 4.55090 4.60994 4.66813 4.74026 4.77692 4.79450 4.80424 4.82671 4.88829 4.94501 5.00974 5.06278 5.10081 5.14506 5.19205 5.20864 5.23831 5.31024 5.33128 5.44765 5.79123 5.84554 5.89064 6.01494 6.08901 6.37786 6.52358 6.68611 7.08076 7.12762 7.39565 8.76470 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.001935 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.008124 B =14466.444150 C =14821.298878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.090 3.910 3 C -0.297 4.297 4 C 0.295 3.705 5 N -0.636 5.636 6 C 0.712 3.288 7 O -0.597 6.597 8 N -0.714 5.714 9 C 0.156 3.844 10 H 0.086 0.914 11 C 0.035 3.965 12 N -0.493 5.493 13 C -0.022 4.022 14 C -0.167 4.167 15 C -0.155 4.155 16 C 0.044 3.956 17 C -0.092 4.092 18 H 0.103 0.897 19 C -0.142 4.142 20 N -0.357 5.357 21 N -0.343 5.343 22 C 0.242 3.758 23 C -0.550 4.550 24 H 0.023 0.977 25 C 0.021 3.979 26 N -0.937 5.937 27 Si 0.951 3.049 28 H -0.250 1.250 29 H -0.278 1.278 30 H -0.245 1.245 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.166 0.834 35 H 0.420 0.580 36 H 0.411 0.589 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.101 0.899 44 H 0.052 0.948 45 H 0.096 0.904 46 H 0.054 0.946 47 H 0.078 0.922 48 H 0.061 0.939 49 H 0.049 0.951 50 H 0.072 0.928 51 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.571 23.775 11.996 30.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 C -0.328 4.328 4 C 0.039 3.961 5 N -0.288 5.288 6 C 0.412 3.588 7 O -0.474 6.474 8 N -0.372 5.372 9 C 0.050 3.950 10 H 0.105 0.895 11 C -0.094 4.094 12 N -0.217 5.217 13 C -0.131 4.131 14 C -0.204 4.204 15 C -0.193 4.193 16 C -0.083 4.083 17 C -0.111 4.111 18 H 0.121 0.879 19 C -0.200 4.200 20 N -0.188 5.188 21 N -0.126 5.126 22 C 0.122 3.878 23 C -0.588 4.588 24 H 0.041 0.959 25 C -0.179 4.179 26 N -0.575 5.575 27 Si 0.772 3.228 28 H -0.174 1.174 29 H -0.204 1.204 30 H -0.168 1.168 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.087 0.913 34 H 0.183 0.817 35 H 0.258 0.742 36 H 0.250 0.750 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.113 0.887 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.071 0.929 45 H 0.114 0.886 46 H 0.073 0.927 47 H 0.097 0.903 48 H 0.080 0.920 49 H 0.067 0.933 50 H 0.090 0.910 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.077 23.492 11.802 29.821 hybrid contribution 0.344 -1.429 0.059 1.471 sum 14.421 22.063 11.861 28.903 Atomic orbital electron populations 1.20541 0.85208 1.04409 1.04459 1.21751 0.96709 0.86360 0.99179 1.21426 0.90017 0.99968 1.21418 1.18936 0.88071 0.88900 1.00176 1.41387 1.07056 1.03837 1.76512 1.15804 0.85378 0.80064 0.77577 1.90848 1.25193 1.73832 1.57558 1.45129 1.07103 1.06082 1.78892 1.21713 1.00524 0.77074 0.95661 0.89550 1.23215 0.95644 0.94503 0.96052 1.64599 1.06584 1.47795 1.02727 1.22670 1.05176 0.94604 0.90624 1.23069 0.99017 0.99842 0.98487 1.23051 0.91891 1.01095 1.03223 1.23316 0.94058 1.00348 0.90551 1.22362 0.93116 0.99425 0.96231 0.87875 1.21708 1.00589 0.98604 0.99055 1.77154 0.99788 1.09735 1.32113 1.48406 1.01772 1.07015 1.55383 1.19766 0.96392 0.74629 0.96996 1.21251 1.47693 0.98701 0.91160 0.95855 1.25841 0.93756 0.99250 0.99044 1.70040 1.46877 1.19113 1.21498 0.85673 0.80496 0.77660 0.78973 1.17431 1.20370 1.16822 0.88035 0.88388 0.91305 0.81671 0.74247 0.74998 0.90584 0.93874 0.89930 0.88706 0.88076 0.87493 0.88035 0.92933 0.88557 0.92727 0.90345 0.91992 0.93283 0.91008 0.91752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.86 9.89 71.24 0.70 -2.16 16 2 C 0.09 3.74 6.92 41.39 0.29 4.03 16 3 C -0.30 -12.26 9.52 22.11 0.21 -12.05 16 4 C 0.29 11.97 8.11 133.31 1.08 13.05 16 5 N -0.64 -19.25 5.45 -321.24 -1.75 -21.00 16 6 C 0.71 20.16 8.53 179.06 1.53 21.69 16 7 O -0.60 -21.29 13.12 -4.00 -0.05 -21.34 16 8 N -0.71 -13.13 4.39 -453.63 -1.99 -15.13 16 9 C 0.16 2.70 3.22 45.87 0.15 2.85 16 10 H 0.09 1.87 7.56 -2.39 -0.02 1.85 16 11 C 0.04 0.64 6.50 86.45 0.56 1.20 16 12 N -0.49 -7.32 5.42 -857.84 -4.65 -11.97 16 13 C -0.02 -0.30 4.96 44.92 0.22 -0.08 16 14 C -0.17 -2.07 10.46 30.60 0.32 -1.75 16 15 C -0.16 -1.59 10.19 30.60 0.31 -1.28 16 16 C 0.04 0.48 5.79 86.65 0.50 0.98 16 17 C -0.09 -1.04 3.62 -9.59 -0.03 -1.07 16 18 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 19 C -0.14 -1.31 8.49 71.98 0.61 -0.70 16 20 N -0.36 -16.50 12.59 -54.43 -0.69 -17.19 16 21 N -0.34 -16.13 3.59 -338.44 -1.22 -17.34 16 22 C 0.24 11.62 4.88 85.63 0.42 12.03 16 23 C -0.55 -31.73 9.94 25.60 0.25 -31.48 16 24 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 25 C 0.02 1.17 5.47 84.65 0.46 1.63 16 26 N -0.94 -57.14 13.96 21.45 0.30 -56.84 16 27 Si 0.95 40.88 27.47 68.60 1.88 42.76 16 28 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 29 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 30 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 31 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.07 2.44 7.72 -2.38 -0.02 2.42 16 34 H 0.17 6.69 5.91 -2.91 -0.02 6.67 16 35 H 0.42 9.92 8.84 -92.71 -0.82 9.10 16 36 H 0.41 5.24 6.47 -92.71 -0.60 4.64 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.04 0.88 7.36 -2.39 -0.02 0.86 16 39 H 0.08 1.22 7.83 -2.39 -0.02 1.20 16 40 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 0.53 7.91 -2.39 -0.02 0.51 16 45 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.06 0.48 6.26 -2.39 -0.01 0.46 16 49 H 0.05 2.34 7.20 -2.39 -0.02 2.32 16 50 H 0.07 3.04 7.08 -2.38 -0.02 3.03 16 51 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -76.15 409.31 -1.09 -77.25 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: -0.52 Total: 33.90 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 7.59 Total: 6.90 kcal Atomic # 7 Polarization: -129.47 SS G_CDS: -9.99 Total: -139.47 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 40.88 SS G_CDS: 1.88 Total: 42.76 kcal Total: -76.15 -1.09 -77.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632900.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.975 kcal (2) G-P(sol) polarization free energy of solvation -76.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds