Wall clock time and date at job start Wed Apr 1 2020 04:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35241 * 126.07111 * 2 1 4 4 C 1.40400 * 107.86622 * 180.13494 * 3 2 1 5 5 N 1.40195 * 125.97256 * 179.82847 * 4 3 2 6 6 C 1.34779 * 119.99981 * 359.71264 * 5 4 3 7 7 O 1.21589 * 119.99632 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00051 * 180.02562 * 6 5 4 9 9 C 1.49484 * 127.48796 * 359.55424 * 8 6 5 10 10 C 1.54279 * 104.32265 * 219.49033 * 9 8 6 11 11 H 1.09000 * 112.49509 * 99.83042 * 10 9 8 12 12 C 1.54422 * 108.75033 * 225.12231 * 10 9 8 13 13 N 1.48742 * 104.33308 * 137.33686 * 12 10 9 14 14 C 1.46898 * 111.00148 * 199.10790 * 13 12 10 15 15 C 1.48741 * 103.49603 * 318.24109 * 13 12 10 16 16 C 1.54421 * 104.44388 * 41.69492 * 15 13 12 17 17 C 1.53000 * 112.49069 * 97.43278 * 16 15 13 18 18 C 1.48088 * 127.85003 * 179.97438 * 8 6 5 19 19 N 1.31214 * 108.05796 * 359.55841 * 4 3 2 20 20 N 1.34964 * 126.06870 * 179.64396 * 2 1 3 21 21 C 1.46501 * 125.97556 * 0.05284 * 20 2 1 22 22 C 1.50707 * 109.46973 * 269.99165 * 21 20 2 23 23 H 1.08003 * 119.99843 * 0.02562 * 22 21 20 24 24 C 1.37875 * 119.99994 * 180.02562 * 22 21 20 25 25 N 1.31513 * 120.00213 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47185 * 89.99771 * 26 24 22 28 28 H 1.48497 * 109.47429 * 210.00130 * 26 24 22 29 29 H 1.48506 * 109.46841 * 329.99954 * 26 24 22 30 30 H 1.08998 * 109.47484 * 270.34868 * 1 2 3 31 31 H 1.09002 * 109.46825 * 30.34952 * 1 2 3 32 32 H 1.09002 * 109.46649 * 150.34502 * 1 2 3 33 33 H 1.07994 * 126.06825 * 359.95715 * 3 2 1 34 34 H 0.97005 * 120.00079 * 179.71377 * 5 4 3 35 35 H 1.08991 * 110.10906 * 101.04443 * 9 8 6 36 36 H 1.09004 * 111.06740 * 338.40209 * 9 8 6 37 37 H 1.09000 * 110.45959 * 18.62668 * 12 10 9 38 38 H 1.08999 * 110.57016 * 256.10285 * 12 10 9 39 39 H 1.09000 * 109.47008 * 174.52824 * 14 13 12 40 40 H 1.09004 * 109.46651 * 294.52830 * 14 13 12 41 41 H 1.09000 * 109.47399 * 54.52517 * 14 13 12 42 42 H 1.09002 * 110.46021 * 160.47063 * 15 13 12 43 43 H 1.09003 * 110.46350 * 282.91602 * 15 13 12 44 44 H 1.09000 * 109.47043 * 61.01783 * 17 16 15 45 45 H 1.09004 * 109.47126 * 181.01983 * 17 16 15 46 46 H 1.09007 * 109.47065 * 301.01288 * 17 16 15 47 47 H 1.08996 * 110.38071 * 21.32445 * 18 8 6 48 48 H 1.09000 * 110.38412 * 258.96108 * 18 8 6 49 49 H 1.08996 * 109.47455 * 29.98900 * 21 20 2 50 50 H 1.08998 * 109.47388 * 149.99868 * 21 20 2 51 51 H 0.96994 * 120.00075 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0031 5 7 4.7738 1.4750 -0.0076 6 6 4.6370 2.8158 -0.0150 7 8 3.5278 3.3137 -0.0183 8 7 5.7298 3.6047 -0.0198 9 6 7.1617 3.1755 -0.0086 10 6 7.8545 4.1822 0.9330 11 1 8.0077 3.7794 1.9342 12 6 9.1718 4.6501 0.2768 13 7 9.2049 6.1167 0.5226 14 6 10.1328 6.7843 -0.4000 15 6 7.8025 6.5429 0.2692 16 6 6.9409 5.4423 0.9257 17 6 6.4632 5.8306 2.3264 18 6 5.7822 5.0846 -0.0285 19 7 3.6337 -0.6576 0.0047 20 7 2.3017 -1.0909 0.0068 21 6 1.8500 -2.4845 0.0143 22 6 1.6943 -2.9544 1.4378 23 1 1.9098 -2.2820 2.2550 24 6 1.2768 -4.2426 1.6968 25 7 1.0149 -5.0616 0.7017 26 14 1.0831 -4.8248 3.4612 27 1 -0.3003 -4.5481 3.9247 28 1 1.3464 -6.2844 3.5326 29 1 2.0493 -4.1044 4.3289 30 1 -0.3634 0.0063 1.0276 31 1 -0.3633 0.8869 -0.5193 32 1 -0.3633 -0.8931 -0.5085 33 1 1.9721 2.1210 -0.0007 34 1 5.6587 1.0778 -0.0053 35 1 7.5811 3.2438 -1.0123 36 1 7.2638 2.1616 0.3783 37 1 9.1588 4.4433 -0.7933 38 1 10.0273 4.1655 0.7473 39 1 10.0657 7.8638 -0.2648 40 1 11.1509 6.4547 -0.1929 41 1 9.8702 6.5297 -1.4268 42 1 7.6075 7.5085 0.7359 43 1 7.6068 6.5919 -0.8019 44 1 5.8462 6.7270 2.2643 45 1 5.8771 5.0147 2.7495 46 1 7.3259 6.0264 2.9632 47 1 4.8445 5.4998 0.3406 48 1 5.9910 5.4512 -1.0336 49 1 0.8917 -2.5588 -0.4996 50 1 2.5850 -3.1075 -0.4954 51 1 0.7215 -5.9680 0.8839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930632988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:20 Heat of formation + Delta-G solvation = 73.316309 kcal Electronic energy + Delta-G solvation = -30700.381412 eV Core-core repulsion = 26637.006617 eV Total energy + Delta-G solvation = -4063.374795 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.15869 -40.49585 -39.11146 -36.20340 -34.79185 -33.45694 -32.85228 -31.45066 -31.30356 -30.72569 -27.58455 -27.20689 -26.41245 -26.36391 -26.08413 -23.48809 -22.78680 -21.73311 -20.96950 -19.75245 -19.44831 -19.05728 -17.53344 -16.67722 -16.50781 -16.22355 -16.02858 -15.47954 -15.25889 -15.11213 -14.71878 -14.51519 -14.18339 -14.05168 -13.82632 -13.68658 -13.33321 -13.03952 -12.94700 -12.65022 -12.45889 -12.27774 -12.22687 -12.20535 -12.08130 -11.83270 -11.67397 -11.53532 -11.37548 -11.16246 -11.08655 -11.04815 -11.00851 -10.81436 -10.43191 -10.23506 -9.98270 -9.64005 -9.51489 -9.01157 -8.92914 -8.62912 -7.88951 -7.37888 -6.23899 -4.31307 2.23585 2.65926 3.09668 3.22194 3.28529 3.32834 3.40617 3.53908 3.84357 3.85870 4.00183 4.21334 4.33003 4.34772 4.59271 4.67444 4.74054 4.77172 4.93368 4.95417 5.09712 5.13571 5.18473 5.20653 5.30775 5.36922 5.38701 5.43023 5.46286 5.54643 5.64606 5.72080 5.73199 5.75001 5.87790 5.95781 6.01251 6.14378 6.27940 6.28739 6.48562 6.49771 6.63217 6.71703 6.93250 7.06372 7.15395 7.54368 7.68998 7.90331 7.92286 8.09414 8.59505 8.69639 8.77857 9.34827 10.83261 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019644 B = 0.002062 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.998456 B =13574.471402 C =14054.963896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.091 3.909 3 C -0.289 4.289 4 C 0.283 3.717 5 N -0.642 5.642 6 C 0.737 3.263 7 O -0.563 6.563 8 N -0.640 5.640 9 C 0.102 3.898 10 C -0.097 4.097 11 H 0.101 0.899 12 C 0.035 3.965 13 N -0.511 5.511 14 C 0.011 3.989 15 C 0.040 3.960 16 C -0.073 4.073 17 C -0.125 4.125 18 C 0.136 3.864 19 N -0.324 5.324 20 N -0.318 5.318 21 C 0.259 3.741 22 C -0.534 4.534 23 H 0.064 0.936 24 C 0.065 3.935 25 N -0.892 5.892 26 Si 0.906 3.094 27 H -0.277 1.277 28 H -0.283 1.283 29 H -0.272 1.272 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.404 0.596 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.029 0.971 42 H 0.085 0.915 43 H 0.050 0.950 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.089 0.911 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.052 0.948 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.246 23.030 -2.703 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.320 4.320 4 C 0.029 3.971 5 N -0.292 5.292 6 C 0.438 3.562 7 O -0.438 6.438 8 N -0.380 5.380 9 C -0.021 4.021 10 C -0.117 4.117 11 H 0.119 0.881 12 C -0.093 4.093 13 N -0.234 5.234 14 C -0.138 4.138 15 C -0.088 4.088 16 C -0.075 4.075 17 C -0.183 4.183 18 C 0.012 3.988 19 N -0.155 5.155 20 N -0.100 5.100 21 C 0.141 3.859 22 C -0.573 4.573 23 H 0.082 0.918 24 C -0.138 4.138 25 N -0.530 5.530 26 Si 0.733 3.267 27 H -0.203 1.203 28 H -0.209 1.209 29 H -0.197 1.197 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.177 0.823 34 H 0.240 0.760 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.048 0.952 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.107 0.893 48 H 0.088 0.912 49 H 0.072 0.928 50 H 0.070 0.930 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.142 22.104 -2.232 26.886 hybrid contribution -0.090 -0.255 0.030 0.272 sum 15.053 21.849 -2.202 26.624 Atomic orbital electron populations 1.20328 0.87912 1.02785 1.03138 1.21053 0.94880 0.87154 1.00946 1.21223 0.89686 0.99801 1.21318 1.18650 0.86493 0.89245 1.02674 1.41378 1.07594 1.03556 1.76650 1.15014 0.83149 0.80154 0.77862 1.90878 1.22660 1.73361 1.56920 1.48277 1.04263 1.06756 1.78656 1.22811 0.80983 0.98897 0.99436 1.22988 0.93843 0.94853 1.00010 0.88068 1.23349 0.97856 0.89187 0.98917 1.65701 1.05236 1.03875 1.48593 1.22525 0.97353 0.99972 0.93910 1.23368 0.88104 0.98662 0.98715 1.22286 0.94394 0.94320 0.96507 1.21620 1.01236 1.01517 0.93877 1.22324 0.99320 0.78761 0.98352 1.77248 0.99957 1.08269 1.29998 1.48955 1.00869 1.07732 1.52488 1.19675 0.95939 0.71380 0.98890 1.21326 1.46641 0.97922 0.91392 0.91769 1.24928 0.94735 0.96058 0.98119 1.69918 1.45028 1.06943 1.31131 0.86357 0.78665 0.77860 0.83816 1.20301 1.20898 1.19722 0.90448 0.90842 0.90892 0.82279 0.76039 0.90679 0.90071 0.93122 0.89655 0.91175 0.91105 0.95232 0.89623 0.93159 0.92184 0.92152 0.91616 0.89289 0.91224 0.92812 0.93048 0.92288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.11 36.01 0.36 -1.09 16 2 C 0.09 1.97 6.92 -82.28 -0.57 1.40 16 3 C -0.29 -6.16 9.52 -39.84 -0.38 -6.54 16 4 C 0.28 5.95 8.11 -154.36 -1.25 4.70 16 5 N -0.64 -10.64 5.43 -15.51 -0.08 -10.72 16 6 C 0.74 11.69 8.54 -86.92 -0.74 10.95 16 7 O -0.56 -10.78 13.73 5.29 0.07 -10.71 16 8 N -0.64 -7.26 3.34 -174.06 -0.58 -7.84 16 9 C 0.10 0.80 6.51 -1.71 -0.01 0.79 16 10 C -0.10 -0.68 3.75 -87.79 -0.33 -1.01 16 11 H 0.10 0.74 7.95 -51.93 -0.41 0.33 16 12 C 0.04 0.21 5.98 -2.06 -0.01 0.20 16 13 N -0.51 -3.39 5.69 -237.85 -1.35 -4.75 16 14 C 0.01 0.06 9.56 60.06 0.57 0.63 16 15 C 0.04 0.25 5.61 -2.06 -0.01 0.24 16 16 C -0.07 -0.54 1.07 -151.67 -0.16 -0.70 16 17 C -0.13 -0.95 8.71 37.16 0.32 -0.63 16 18 C 0.14 1.25 6.26 -2.48 -0.02 1.23 16 19 N -0.32 -7.63 12.59 31.44 0.40 -7.24 16 20 N -0.32 -7.68 3.59 -58.32 -0.21 -7.89 16 21 C 0.26 6.71 5.99 -5.19 -0.03 6.68 16 22 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 23 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 24 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 25 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 26 Si 0.91 21.26 29.54 -169.99 -5.02 16.24 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.28 7.07 -51.93 -0.37 0.91 16 33 H 0.16 3.34 5.91 -52.49 -0.31 3.03 16 34 H 0.40 5.54 7.23 -40.82 -0.29 5.24 16 35 H 0.08 0.51 7.16 -51.93 -0.37 0.13 16 36 H 0.08 0.60 6.91 -51.93 -0.36 0.24 16 37 H 0.05 0.28 6.96 -51.93 -0.36 -0.08 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.03 0.15 7.98 -51.93 -0.41 -0.27 16 42 H 0.09 0.51 7.92 -51.93 -0.41 0.10 16 43 H 0.05 0.30 7.03 -51.93 -0.36 -0.06 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.09 0.93 7.66 -51.93 -0.40 0.54 16 48 H 0.07 0.56 7.15 -51.93 -0.37 0.19 16 49 H 0.05 1.38 7.04 -51.93 -0.37 1.01 16 50 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 51 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 403.37 15.07 6.08 6.08 Total: -1.00 -33.15 403.37 -10.79 -43.94 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -8.15 Total: 3.97 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -2.67 Total: 3.36 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: -1.10 Total: -62.89 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.15 -10.79 -43.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.259 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds