Wall clock time and date at job start Wed Apr 1 2020 04:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35241 * 126.07111 * 2 1 4 4 C 1.40400 * 107.86622 * 180.13494 * 3 2 1 5 5 N 1.40195 * 125.97256 * 179.82847 * 4 3 2 6 6 C 1.34779 * 119.99981 * 359.71264 * 5 4 3 7 7 O 1.21589 * 119.99632 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00051 * 180.02562 * 6 5 4 9 9 C 1.49484 * 127.48796 * 359.55424 * 8 6 5 10 10 C 1.54279 * 104.32265 * 219.49033 * 9 8 6 11 11 H 1.09000 * 112.49509 * 99.83042 * 10 9 8 12 12 C 1.54422 * 108.75033 * 225.12231 * 10 9 8 13 13 N 1.48742 * 104.33308 * 137.33686 * 12 10 9 14 14 C 1.46898 * 111.00148 * 199.10790 * 13 12 10 15 15 C 1.48741 * 103.49603 * 318.24109 * 13 12 10 16 16 C 1.54421 * 104.44388 * 41.69492 * 15 13 12 17 17 C 1.53000 * 112.49069 * 97.43278 * 16 15 13 18 18 C 1.48088 * 127.85003 * 179.97438 * 8 6 5 19 19 N 1.31214 * 108.05796 * 359.55841 * 4 3 2 20 20 N 1.34964 * 126.06870 * 179.64396 * 2 1 3 21 21 C 1.46501 * 125.97556 * 0.05284 * 20 2 1 22 22 C 1.50707 * 109.46973 * 269.99165 * 21 20 2 23 23 H 1.08003 * 119.99843 * 0.02562 * 22 21 20 24 24 C 1.37875 * 119.99994 * 180.02562 * 22 21 20 25 25 N 1.31513 * 120.00213 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48493 * 109.47185 * 89.99771 * 26 24 22 28 28 H 1.48497 * 109.47429 * 210.00130 * 26 24 22 29 29 H 1.48506 * 109.46841 * 329.99954 * 26 24 22 30 30 H 1.08998 * 109.47484 * 270.34868 * 1 2 3 31 31 H 1.09002 * 109.46825 * 30.34952 * 1 2 3 32 32 H 1.09002 * 109.46649 * 150.34502 * 1 2 3 33 33 H 1.07994 * 126.06825 * 359.95715 * 3 2 1 34 34 H 0.97005 * 120.00079 * 179.71377 * 5 4 3 35 35 H 1.08991 * 110.10906 * 101.04443 * 9 8 6 36 36 H 1.09004 * 111.06740 * 338.40209 * 9 8 6 37 37 H 1.09000 * 110.45959 * 18.62668 * 12 10 9 38 38 H 1.08999 * 110.57016 * 256.10285 * 12 10 9 39 39 H 1.09000 * 109.47008 * 174.52824 * 14 13 12 40 40 H 1.09004 * 109.46651 * 294.52830 * 14 13 12 41 41 H 1.09000 * 109.47399 * 54.52517 * 14 13 12 42 42 H 1.09002 * 110.46021 * 160.47063 * 15 13 12 43 43 H 1.09003 * 110.46350 * 282.91602 * 15 13 12 44 44 H 1.09000 * 109.47043 * 61.01783 * 17 16 15 45 45 H 1.09004 * 109.47126 * 181.01983 * 17 16 15 46 46 H 1.09007 * 109.47065 * 301.01288 * 17 16 15 47 47 H 1.08996 * 110.38071 * 21.32445 * 18 8 6 48 48 H 1.09000 * 110.38412 * 258.96108 * 18 8 6 49 49 H 1.08996 * 109.47455 * 29.98900 * 21 20 2 50 50 H 1.08998 * 109.47388 * 149.99868 * 21 20 2 51 51 H 0.96994 * 120.00075 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6545 -0.0031 5 7 4.7738 1.4750 -0.0076 6 6 4.6370 2.8158 -0.0150 7 8 3.5278 3.3137 -0.0183 8 7 5.7298 3.6047 -0.0198 9 6 7.1617 3.1755 -0.0086 10 6 7.8545 4.1822 0.9330 11 1 8.0077 3.7794 1.9342 12 6 9.1718 4.6501 0.2768 13 7 9.2049 6.1167 0.5226 14 6 10.1328 6.7843 -0.4000 15 6 7.8025 6.5429 0.2692 16 6 6.9409 5.4423 0.9257 17 6 6.4632 5.8306 2.3264 18 6 5.7822 5.0846 -0.0285 19 7 3.6337 -0.6576 0.0047 20 7 2.3017 -1.0909 0.0068 21 6 1.8500 -2.4845 0.0143 22 6 1.6943 -2.9544 1.4378 23 1 1.9098 -2.2820 2.2550 24 6 1.2768 -4.2426 1.6968 25 7 1.0149 -5.0616 0.7017 26 14 1.0831 -4.8248 3.4612 27 1 -0.3003 -4.5481 3.9247 28 1 1.3464 -6.2844 3.5326 29 1 2.0493 -4.1044 4.3289 30 1 -0.3634 0.0063 1.0276 31 1 -0.3633 0.8869 -0.5193 32 1 -0.3633 -0.8931 -0.5085 33 1 1.9721 2.1210 -0.0007 34 1 5.6587 1.0778 -0.0053 35 1 7.5811 3.2438 -1.0123 36 1 7.2638 2.1616 0.3783 37 1 9.1588 4.4433 -0.7933 38 1 10.0273 4.1655 0.7473 39 1 10.0657 7.8638 -0.2648 40 1 11.1509 6.4547 -0.1929 41 1 9.8702 6.5297 -1.4268 42 1 7.6075 7.5085 0.7359 43 1 7.6068 6.5919 -0.8019 44 1 5.8462 6.7270 2.2643 45 1 5.8771 5.0147 2.7495 46 1 7.3259 6.0264 2.9632 47 1 4.8445 5.4998 0.3406 48 1 5.9910 5.4512 -1.0336 49 1 0.8917 -2.5588 -0.4996 50 1 2.5850 -3.1075 -0.4954 51 1 0.7215 -5.9680 0.8839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930632988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:49:19 Heat of formation + Delta-G solvation = 51.700216 kcal Electronic energy + Delta-G solvation = -30701.318756 eV Core-core repulsion = 26637.006617 eV Total energy + Delta-G solvation = -4064.312139 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.37765 -41.69039 -40.26885 -36.97038 -36.32483 -35.32114 -33.79963 -32.84174 -32.56922 -32.02617 -28.78562 -28.11019 -27.89066 -27.39776 -26.96873 -24.99340 -23.96202 -22.42095 -22.14222 -21.26323 -20.55148 -20.04600 -18.84076 -18.64280 -17.73037 -17.26616 -17.11830 -16.75935 -16.37590 -16.14647 -15.88317 -15.76451 -15.60679 -15.04948 -14.78876 -14.48602 -14.43415 -14.28362 -13.94982 -13.82157 -13.71617 -13.58334 -13.46225 -13.32680 -13.14419 -12.89638 -12.81061 -12.69376 -12.65857 -12.31649 -12.26071 -12.12778 -12.12012 -11.76912 -11.69067 -11.59809 -11.54153 -11.37734 -11.11405 -10.72869 -9.95239 -9.56721 -9.45001 -9.07961 -8.32285 -6.49894 0.96785 1.03288 1.37885 1.38606 1.50053 1.62975 1.95328 2.33448 2.35020 2.77780 2.97128 3.04758 3.27886 3.50285 3.73122 3.84958 4.01404 4.09009 4.13059 4.15636 4.22491 4.39137 4.45723 4.51808 4.57614 4.60122 4.67608 4.72054 4.73182 4.76431 4.77467 4.86635 4.89519 4.90858 4.97513 4.99936 5.01825 5.07726 5.09988 5.14929 5.16328 5.20266 5.35092 5.39553 5.54141 5.80976 5.81710 5.82975 5.94764 6.06444 6.26715 6.58722 6.64187 7.06152 7.20840 7.34553 8.73465 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.019644 B = 0.002062 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.998456 B =13574.471402 C =14054.963896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.089 3.911 3 C -0.299 4.299 4 C 0.293 3.707 5 N -0.635 5.635 6 C 0.732 3.268 7 O -0.600 6.600 8 N -0.635 5.635 9 C 0.098 3.902 10 C -0.093 4.093 11 H 0.098 0.902 12 C 0.040 3.960 13 N -0.524 5.524 14 C 0.011 3.989 15 C 0.045 3.955 16 C -0.069 4.069 17 C -0.122 4.122 18 C 0.133 3.867 19 N -0.359 5.359 20 N -0.342 5.342 21 C 0.275 3.725 22 C -0.552 4.552 23 H 0.048 0.952 24 C 0.023 3.977 25 N -0.917 5.917 26 Si 0.971 3.029 27 H -0.264 1.264 28 H -0.274 1.274 29 H -0.277 1.277 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.165 0.835 34 H 0.417 0.583 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.090 0.910 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.039 0.961 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.053 0.947 50 H 0.025 0.975 51 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.338 24.348 -2.329 29.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 C -0.330 4.330 4 C 0.038 3.962 5 N -0.287 5.287 6 C 0.434 3.566 7 O -0.478 6.478 8 N -0.372 5.372 9 C -0.023 4.023 10 C -0.113 4.113 11 H 0.116 0.884 12 C -0.088 4.088 13 N -0.247 5.247 14 C -0.137 4.137 15 C -0.083 4.083 16 C -0.070 4.070 17 C -0.179 4.179 18 C 0.010 3.990 19 N -0.190 5.190 20 N -0.125 5.125 21 C 0.156 3.844 22 C -0.590 4.590 23 H 0.067 0.933 24 C -0.179 4.179 25 N -0.556 5.556 26 Si 0.795 3.205 27 H -0.189 1.189 28 H -0.199 1.199 29 H -0.202 1.202 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.088 0.912 33 H 0.182 0.818 34 H 0.255 0.745 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.052 0.948 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.058 0.942 46 H 0.088 0.912 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.071 0.929 50 H 0.043 0.957 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.298 23.464 -1.869 28.630 hybrid contribution -0.334 -0.525 -0.120 0.633 sum 15.964 22.939 -1.989 28.018 Atomic orbital electron populations 1.20468 0.85275 1.04215 1.03970 1.21729 0.96661 0.86387 0.99406 1.21380 0.89960 0.99855 1.21773 1.18921 0.87929 0.88913 1.00474 1.41363 1.07033 1.03671 1.76585 1.15163 0.83806 0.79880 0.77731 1.90836 1.24547 1.73836 1.58589 1.48325 1.04643 1.07460 1.76773 1.23095 0.78727 0.99570 1.00950 1.22954 0.94309 0.94285 0.99777 0.88364 1.23330 0.97201 0.88989 0.99320 1.65706 1.05423 1.04203 1.49392 1.22550 0.97210 1.00148 0.93799 1.23318 0.87780 0.98221 0.98984 1.22228 0.93829 0.95089 0.95886 1.21578 1.01193 1.01023 0.94089 1.22540 0.99441 0.77232 0.99764 1.77168 1.00113 1.09575 1.32138 1.48767 1.01603 1.07503 1.54593 1.19256 0.94955 0.72355 0.97795 1.21426 1.47508 0.98347 0.91740 0.93330 1.25727 0.93988 0.95882 1.02256 1.69998 1.45096 1.07387 1.33081 0.85358 0.78955 0.77561 0.78620 1.18939 1.19855 1.20168 0.89791 0.87636 0.91160 0.81819 0.74504 0.88688 0.89485 0.92267 0.89049 0.90748 0.90682 0.94814 0.89165 0.92453 0.91541 0.94159 0.91178 0.90869 0.89533 0.92924 0.95701 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.79 10.11 71.24 0.72 -2.07 16 2 C 0.09 3.86 6.92 41.39 0.29 4.14 16 3 C -0.30 -12.82 9.52 22.10 0.21 -12.61 16 4 C 0.29 12.46 8.11 133.31 1.08 13.54 16 5 N -0.63 -20.93 5.43 -321.23 -1.74 -22.67 16 6 C 0.73 23.01 8.54 179.05 1.53 24.54 16 7 O -0.60 -23.06 13.73 -3.99 -0.05 -23.12 16 8 N -0.63 -13.69 3.34 -822.87 -2.75 -16.44 16 9 C 0.10 1.36 6.51 86.23 0.56 1.92 16 10 C -0.09 -1.12 3.75 -8.96 -0.03 -1.16 16 11 H 0.10 1.28 7.95 -2.39 -0.02 1.26 16 12 C 0.04 0.37 5.98 86.43 0.52 0.89 16 13 N -0.52 -5.63 5.69 -906.43 -5.16 -10.79 16 14 C 0.01 0.09 9.56 127.69 1.22 1.31 16 15 C 0.05 0.46 5.61 86.43 0.48 0.94 16 16 C -0.07 -0.89 1.07 -50.34 -0.05 -0.95 16 17 C -0.12 -1.73 8.71 71.98 0.63 -1.11 16 18 C 0.13 2.27 6.26 86.52 0.54 2.81 16 19 N -0.36 -17.34 12.59 -54.43 -0.69 -18.03 16 20 N -0.34 -16.95 3.59 -338.44 -1.22 -18.17 16 21 C 0.28 14.75 5.99 85.64 0.51 15.26 16 22 C -0.55 -31.29 9.39 25.60 0.24 -31.05 16 23 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 24 C 0.02 1.24 5.46 84.65 0.46 1.70 16 25 N -0.92 -52.04 13.29 21.45 0.28 -51.76 16 26 Si 0.97 43.41 29.54 68.60 2.03 45.43 16 27 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 28 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 29 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 30 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.07 2.44 7.07 -2.39 -0.02 2.43 16 33 H 0.16 6.90 5.91 -2.91 -0.02 6.88 16 34 H 0.42 11.21 7.23 -92.70 -0.67 10.54 16 35 H 0.10 1.00 7.16 -2.39 -0.02 0.98 16 36 H 0.09 1.12 6.91 -2.38 -0.02 1.10 16 37 H 0.06 0.47 6.96 -2.39 -0.02 0.46 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.07 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.03 0.24 7.98 -2.39 -0.02 0.22 16 42 H 0.09 0.86 7.92 -2.39 -0.02 0.84 16 43 H 0.06 0.52 7.03 -2.39 -0.02 0.50 16 44 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 47 H 0.07 1.51 7.66 -2.39 -0.02 1.49 16 48 H 0.09 1.22 7.15 -2.39 -0.02 1.20 16 49 H 0.05 2.78 7.04 -2.39 -0.02 2.77 16 50 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -72.13 403.37 -0.12 -72.25 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.27 Total: 25.18 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 8.91 Total: 18.12 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -11.27 Total: -137.86 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: -0.05 Total: -23.12 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -72.13 -0.12 -72.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930632988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.946 kcal (2) G-P(sol) polarization free energy of solvation -72.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds