Wall clock time and date at job start Wed Apr 1 2020 05:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33463 * 125.50000 * 2 1 4 4 C 1.30328 * 109.72792 * 179.97438 * 3 2 1 5 5 N 1.34680 * 108.04445 * 0.06213 * 4 3 2 6 6 N 1.30978 * 125.49464 * 179.97438 * 2 1 3 7 7 C 1.46293 * 125.04560 * 179.88371 * 5 4 3 8 8 C 1.53308 * 108.77634 * 342.98652 * 7 5 4 9 9 H 1.09000 * 109.46500 * 290.13308 * 8 7 5 10 10 C 1.50698 * 109.46998 * 170.14131 * 8 7 5 11 11 O 1.21277 * 119.99597 * 239.99817 * 10 8 7 12 12 N 1.34776 * 120.00403 * 60.00045 * 10 8 7 13 13 C 1.46495 * 120.00282 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47060 * 179.97438 * 13 12 10 15 15 C 1.53033 * 109.44784 * 64.96661 * 14 13 12 16 16 C 1.53191 * 109.31157 * 181.37523 * 15 14 13 17 17 N 1.46926 * 108.77868 * 305.36408 * 16 15 14 18 18 C 1.36935 * 120.63162 * 233.63199 * 17 16 15 19 19 H 1.07995 * 120.00514 * 27.65848 * 18 17 16 20 20 C 1.38815 * 119.99528 * 207.66177 * 18 17 16 21 21 N 1.31617 * 120.00272 * 17.36833 * 20 18 17 22 22 Si 1.86807 * 119.99654 * 197.37374 * 20 18 17 23 23 H 1.48499 * 109.46885 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47467 * 119.99909 * 22 20 18 25 25 H 1.48502 * 109.46704 * 240.00104 * 22 20 18 26 26 C 1.46930 * 118.73567 * 53.60853 * 17 16 15 27 27 C 1.53046 * 109.45464 * 185.02775 * 14 13 12 28 28 C 1.53160 * 109.48622 * 50.13483 * 8 7 5 29 29 C 1.50926 * 127.90385 * 180.10323 * 4 3 2 30 30 H 1.09006 * 109.47137 * 269.99984 * 1 2 3 31 31 H 1.08999 * 109.47015 * 30.00261 * 1 2 3 32 32 H 1.09000 * 109.47097 * 150.00297 * 1 2 3 33 33 H 1.09002 * 109.58733 * 223.19771 * 7 5 4 34 34 H 1.08999 * 109.70387 * 102.84211 * 7 5 4 35 35 H 0.96999 * 119.99544 * 359.97438 * 12 10 8 36 36 H 1.09006 * 109.47055 * 59.99647 * 13 12 10 37 37 H 1.08996 * 109.47099 * 299.99932 * 13 12 10 38 38 H 1.08992 * 109.45913 * 304.99948 * 14 13 12 39 39 H 1.08993 * 109.50191 * 301.33014 * 15 14 13 40 40 H 1.09004 * 109.49733 * 61.42593 * 15 14 13 41 41 H 1.09002 * 109.58470 * 185.57472 * 16 15 14 42 42 H 1.08995 * 109.58401 * 65.15649 * 16 15 14 43 43 H 0.96998 * 119.99469 * 179.97438 * 21 20 18 44 44 H 1.08999 * 109.58708 * 186.60806 * 26 17 16 45 45 H 1.09000 * 109.70474 * 66.24532 * 26 17 16 46 46 H 1.08997 * 109.49792 * 298.57624 * 27 14 13 47 47 H 1.09000 * 109.50207 * 58.68014 * 27 14 13 48 48 H 1.09002 * 109.50498 * 50.74878 * 28 8 7 49 49 H 1.08992 * 109.50801 * 170.89138 * 28 8 7 50 50 H 1.09009 * 109.71979 * 283.70260 * 29 4 3 51 51 H 1.08997 * 109.72145 * 44.30510 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0865 0.0000 4 6 3.5362 0.7323 0.0005 5 7 3.5897 -0.6134 -0.0005 6 7 2.2675 -1.0664 0.0005 7 6 4.8197 -1.4053 -0.0027 8 6 5.9854 -0.5051 -0.4284 9 1 5.8847 -0.2557 -1.4847 10 6 7.2874 -1.2303 -0.2054 11 8 8.1195 -0.7656 0.5447 12 7 7.5273 -2.3951 -0.8394 13 6 8.7929 -3.1003 -0.6222 14 6 8.8101 -4.3849 -1.4532 15 6 8.7940 -4.0291 -2.9415 16 6 8.7766 -5.3174 -3.7702 17 7 9.9113 -6.1572 -3.3628 18 6 10.8018 -6.6253 -4.2917 19 1 10.9720 -6.0721 -5.2034 20 6 11.4858 -7.8111 -4.0614 21 7 11.0527 -8.6541 -3.1481 22 14 13.0211 -8.2104 -5.0479 23 1 13.2953 -7.1083 -6.0046 24 1 14.1753 -8.3652 -4.1264 25 1 12.8128 -9.4755 -5.7973 26 6 10.0726 -6.4847 -1.9395 27 6 10.0755 -5.1833 -1.1313 28 6 5.9681 0.7807 0.4036 29 6 4.7522 1.6263 0.0029 30 1 -0.3634 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8900 -0.5138 33 1 4.7207 -2.2321 -0.7061 34 1 5.0066 -1.7968 0.9973 35 1 6.8617 -2.7669 -1.4390 36 1 8.8930 -3.3500 0.4342 37 1 9.6219 -2.4605 -0.9244 38 1 7.9318 -4.9842 -1.2136 39 1 7.9044 -3.4405 -3.1653 40 1 9.6847 -3.4507 -3.1869 41 1 8.8649 -5.0723 -4.8286 42 1 7.8438 -5.8528 -3.5937 43 1 11.5305 -9.4828 -2.9876 44 1 11.0160 -7.0097 -1.7900 45 1 9.2469 -7.1164 -1.6119 46 1 10.9541 -4.5940 -1.3939 47 1 10.0979 -5.4162 -0.0668 48 1 5.9031 0.5285 1.4620 49 1 6.8815 1.3460 0.2188 50 1 4.9054 2.0415 -0.9933 51 1 4.6130 2.4347 0.7206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933485237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:38 Heat of formation + Delta-G solvation = 32.716534 kcal Electronic energy + Delta-G solvation = -30393.422633 eV Core-core repulsion = 26328.287299 eV Total energy + Delta-G solvation = -4065.135334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -43.42668 -41.17945 -39.45430 -37.71711 -36.43721 -34.60101 -34.21380 -33.10618 -32.47705 -31.43693 -30.74777 -29.49179 -28.27061 -25.93511 -25.34222 -24.28371 -23.74802 -22.62847 -21.91680 -21.51925 -20.73523 -20.35509 -18.76891 -18.28356 -17.83411 -17.18863 -16.99592 -16.80356 -16.42923 -15.89464 -15.68482 -15.30934 -15.29709 -15.22487 -15.14422 -14.88362 -14.66494 -14.22568 -14.06971 -13.91696 -13.83177 -13.52472 -13.37809 -13.32593 -13.01978 -12.83909 -12.80331 -12.67572 -12.59369 -12.26224 -12.23688 -11.99581 -11.96446 -11.84337 -11.61592 -11.30110 -11.13652 -11.10547 -10.91834 -10.78882 -10.54199 -10.32534 -10.11298 -8.67729 -7.88125 -5.32229 0.53616 1.09998 1.44486 1.47045 1.56605 1.56861 1.79978 2.08503 2.50540 2.92717 3.11917 3.26457 3.42790 3.47726 3.71141 3.71713 3.81257 3.85055 3.95169 4.03713 4.09119 4.19014 4.23433 4.38669 4.50900 4.54360 4.54932 4.70504 4.72892 4.74195 4.76551 4.83492 4.88897 4.93538 4.94497 4.95502 5.02048 5.10534 5.14223 5.29096 5.29939 5.31417 5.36954 5.44943 5.45908 5.56042 5.66250 5.76130 5.79781 6.39447 6.46741 7.05861 7.13866 7.15491 7.88316 8.38083 9.18017 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021168 B = 0.001874 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.421493 B =14934.985973 C =15629.042807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.205 3.795 3 N -0.565 5.565 4 C 0.276 3.724 5 N -0.381 5.381 6 N -0.347 5.347 7 C 0.136 3.864 8 C -0.112 4.112 9 H 0.136 0.864 10 C 0.528 3.472 11 O -0.567 6.567 12 N -0.713 5.713 13 C 0.136 3.864 14 C -0.079 4.079 15 C -0.114 4.114 16 C 0.138 3.862 17 N -0.612 5.612 18 C -0.259 4.259 19 H 0.065 0.935 20 C -0.053 4.053 21 N -0.935 5.935 22 Si 0.963 3.037 23 H -0.267 1.267 24 H -0.291 1.291 25 H -0.293 1.293 26 C 0.176 3.824 27 C -0.122 4.122 28 C -0.103 4.103 29 C -0.034 4.034 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.413 0.587 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.017 0.983 43 H 0.249 0.751 44 H 0.050 0.950 45 H -0.003 1.003 46 H 0.051 0.949 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.106 0.894 50 H 0.124 0.876 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.454 21.341 7.110 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 N -0.294 5.294 4 C 0.000 4.000 5 N -0.172 5.172 6 N -0.176 5.176 7 C 0.014 3.986 8 C -0.134 4.134 9 H 0.153 0.847 10 C 0.313 3.687 11 O -0.445 6.445 12 N -0.365 5.365 13 C 0.012 3.988 14 C -0.098 4.098 15 C -0.153 4.153 16 C 0.013 3.987 17 N -0.336 5.336 18 C -0.390 4.390 19 H 0.083 0.917 20 C -0.248 4.248 21 N -0.581 5.581 22 Si 0.792 3.208 23 H -0.191 1.191 24 H -0.218 1.218 25 H -0.220 1.220 26 C 0.050 3.950 27 C -0.162 4.162 28 C -0.142 4.142 29 C -0.074 4.074 30 H 0.112 0.888 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.134 0.866 34 H 0.110 0.890 35 H 0.251 0.749 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.015 0.985 46 H 0.069 0.931 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.125 0.875 50 H 0.142 0.858 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.123 21.024 7.658 27.579 hybrid contribution 0.911 -1.330 -0.681 1.750 sum -15.213 19.694 6.977 25.845 Atomic orbital electron populations 1.20235 0.81648 1.04943 1.04697 1.25155 0.99782 0.85217 0.97459 1.70208 1.00746 1.31414 1.27059 1.25041 0.95679 0.84274 0.94985 1.50206 1.05537 1.06262 1.55182 1.77908 0.87397 1.23507 1.28747 1.21848 0.77878 0.93911 1.04915 1.21681 0.90157 0.96329 1.05233 0.84653 1.20306 0.88209 0.80719 0.79443 1.90739 1.48669 1.67030 1.38088 1.46029 1.20229 1.22739 1.47489 1.21293 0.85676 0.92317 0.99494 1.21152 0.98683 0.94837 0.95130 1.21926 1.01861 0.97209 0.94266 1.21092 0.89170 0.91208 0.97270 1.44345 1.27737 1.58585 1.02914 1.19533 1.16254 1.01911 1.01253 0.91719 1.25763 1.03213 0.95301 1.00536 1.70183 1.40196 1.09904 1.37853 0.85266 0.79862 0.77546 0.78144 1.19127 1.21754 1.22031 1.20579 0.98892 0.92855 0.82686 1.21973 0.97349 0.97432 0.99430 1.21545 0.99050 0.93824 0.99736 1.20614 0.84587 0.95490 1.06674 0.88762 0.88547 0.89154 0.86635 0.88972 0.74948 0.91659 0.92083 0.90543 0.89536 0.92954 0.93142 0.96549 0.94187 0.93165 0.98482 0.93052 0.91292 0.91165 0.87547 0.85778 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.51 71.24 0.75 0.03 16 2 C 0.21 4.37 8.15 138.48 1.13 5.50 16 3 N -0.57 -12.34 11.18 -179.31 -2.01 -14.34 16 4 C 0.28 4.91 7.72 138.36 1.07 5.98 16 5 N -0.38 -7.17 4.04 -338.34 -1.37 -8.54 16 6 N -0.35 -8.06 12.74 -51.08 -0.65 -8.72 16 7 C 0.14 1.78 6.43 86.52 0.56 2.33 16 8 C -0.11 -1.22 2.54 -11.38 -0.03 -1.24 16 9 H 0.14 0.94 8.12 -2.39 -0.02 0.92 16 10 C 0.53 8.97 7.14 87.66 0.63 9.60 16 11 O -0.57 -14.26 15.83 -3.02 -0.05 -14.31 16 12 N -0.71 -11.43 5.17 -463.07 -2.40 -13.83 16 13 C 0.14 2.97 5.06 86.38 0.44 3.40 16 14 C -0.08 -2.08 2.19 -10.77 -0.02 -2.10 16 15 C -0.11 -3.13 5.25 30.67 0.16 -2.97 16 16 C 0.14 5.21 6.52 86.36 0.56 5.77 16 17 N -0.61 -29.58 2.99 -699.09 -2.09 -31.68 16 18 C -0.26 -14.03 9.59 84.03 0.81 -13.22 16 19 H 0.07 3.43 7.89 -2.91 -0.02 3.41 16 20 C -0.05 -2.93 4.91 84.86 0.42 -2.52 16 21 N -0.93 -54.92 11.19 21.65 0.24 -54.68 16 22 Si 0.96 44.60 29.59 68.60 2.03 46.63 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 26 C 0.18 8.13 5.31 86.36 0.46 8.59 16 27 C -0.12 -4.17 5.36 30.68 0.16 -4.01 16 28 C -0.10 -1.08 4.68 30.79 0.14 -0.94 16 29 C -0.03 -0.32 6.33 30.06 0.19 -0.13 16 30 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 1.20 7.88 -2.39 -0.02 1.18 16 34 H 0.09 1.26 8.11 -2.39 -0.02 1.24 16 35 H 0.41 4.72 7.30 -92.71 -0.68 4.04 16 36 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.09 1.72 7.15 -2.39 -0.02 1.70 16 40 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 42 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.05 2.70 6.03 -2.39 -0.01 2.68 16 45 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 46 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 49 H 0.11 1.08 7.80 -2.39 -0.02 1.06 16 50 H 0.12 0.69 8.14 -2.38 -0.02 0.67 16 51 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -75.86 402.23 1.38 -74.48 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.25 Total: 10.92 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 7.41 Total: 14.07 kcal Atomic # 7 Polarization: -123.51 SS G_CDS: -8.27 Total: -131.78 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.05 Total: -14.31 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -75.86 1.38 -74.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933485237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.197 kcal (2) G-P(sol) polarization free energy of solvation -75.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds