Wall clock time and date at job start Wed Apr 1 2020 04:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 120.00342 * 2 1 4 4 C 1.38412 * 119.99602 * 179.97438 * 2 1 3 5 5 C 1.39889 * 119.99980 * 10.01192 * 4 2 1 6 6 N 1.31451 * 120.01634 * 179.97438 * 5 4 2 7 7 C 1.33282 * 120.00909 * 359.97438 * 6 5 4 8 8 C 1.47812 * 120.00186 * 180.02562 * 7 6 5 9 9 O 1.21564 * 120.00019 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00146 * 0.02562 * 8 7 6 11 11 C 1.46502 * 119.99909 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.46090 * 34.97138 * 11 10 8 13 13 C 1.53046 * 109.45688 * 274.99950 * 11 10 8 14 14 C 1.53197 * 109.33735 * 178.61526 * 13 11 10 15 15 N 1.46992 * 108.74052 * 54.61749 * 14 13 11 16 16 C 1.36936 * 120.61272 * 126.38373 * 15 14 13 17 17 H 1.07999 * 120.00082 * 211.71862 * 16 15 14 18 18 C 1.38813 * 119.99563 * 31.72968 * 16 15 14 19 19 N 1.31617 * 120.00349 * 15.54396 * 18 16 15 20 20 Si 1.86803 * 119.99595 * 195.54414 * 18 16 15 21 21 H 1.48503 * 109.47074 * 94.96453 * 20 18 16 22 22 H 1.48507 * 109.46974 * 214.96002 * 20 18 16 23 23 H 1.48502 * 109.47522 * 334.95981 * 20 18 16 24 24 C 1.46926 * 118.75592 * 306.41394 * 15 14 13 25 25 C 1.53042 * 109.44651 * 154.93854 * 11 10 8 26 26 C 1.52997 * 109.49925 * 301.32750 * 25 11 10 27 27 C 1.52999 * 109.49813 * 61.39486 * 25 11 10 28 28 C 1.39411 * 119.99381 * 0.28116 * 7 6 5 29 29 N 1.32054 * 119.98460 * 359.45153 * 28 7 6 30 30 H 1.08992 * 109.46983 * 180.41852 * 1 2 3 31 31 H 1.09000 * 109.46927 * 300.41863 * 1 2 3 32 32 H 1.09000 * 109.46572 * 60.41927 * 1 2 3 33 33 H 1.08991 * 109.47221 * 269.99892 * 3 2 1 34 34 H 1.08999 * 109.47139 * 30.00305 * 3 2 1 35 35 H 1.08998 * 109.46963 * 149.99397 * 3 2 1 36 36 H 1.08005 * 119.99036 * 359.96828 * 5 4 2 37 37 H 0.97001 * 119.99758 * 0.02562 * 10 8 7 38 38 H 1.08997 * 109.49390 * 298.57938 * 13 11 10 39 39 H 1.08992 * 109.49860 * 58.64623 * 13 11 10 40 40 H 1.08997 * 109.58500 * 174.43721 * 14 13 11 41 41 H 1.09000 * 109.58176 * 294.86148 * 14 13 11 42 42 H 0.97004 * 119.99819 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.58712 * 293.81569 * 24 15 14 44 44 H 1.09003 * 109.70243 * 173.46109 * 24 15 14 45 45 H 1.08999 * 109.46678 * 60.00113 * 26 25 11 46 46 H 1.09001 * 109.47198 * 180.02562 * 26 25 11 47 47 H 1.09007 * 109.46942 * 300.00087 * 26 25 11 48 48 H 1.09002 * 109.47296 * 59.99630 * 27 25 11 49 49 H 1.08996 * 109.47168 * 179.97438 * 27 25 11 50 50 H 1.08995 * 109.47094 * 299.99946 * 27 25 11 51 51 H 1.07996 * 120.00613 * 179.71765 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1570 -1.1987 0.0005 5 6 1.4735 -2.4010 -0.2095 6 7 2.1304 -3.5396 -0.2096 7 6 3.4481 -3.5489 -0.0100 8 6 4.1868 -4.8293 -0.0107 9 8 5.3886 -4.8377 0.1719 10 7 3.5278 -5.9873 -0.2136 11 6 4.2598 -7.2563 -0.2137 12 1 5.0710 -7.2077 0.5128 13 6 4.8383 -7.5111 -1.6076 14 6 5.6321 -8.8213 -1.5956 15 7 4.7622 -9.8960 -1.0969 16 6 4.5873 -11.0446 -1.8217 17 1 3.6477 -11.5749 -1.7750 18 6 5.6180 -11.5274 -2.6163 19 7 6.8437 -11.0777 -2.4495 20 14 5.2654 -12.8155 -3.9225 21 1 5.0450 -12.1470 -5.2301 22 1 6.4212 -13.7419 -4.0288 23 1 4.0499 -13.5815 -3.5470 24 6 4.0834 -9.7145 0.1935 25 6 3.3073 -8.3941 0.1610 26 6 2.7044 -8.1219 1.5406 27 6 2.1870 -8.4848 -0.8771 28 6 4.1290 -2.3514 0.2047 29 7 3.4696 -1.2073 0.1995 30 1 -0.3633 -1.0276 0.0075 31 1 -0.3633 0.5203 0.8862 32 1 -0.3632 0.5073 -0.8937 33 1 2.3793 1.5833 -1.0276 34 1 1.6086 2.0283 0.5139 35 1 3.1499 1.1383 0.5139 36 1 0.4057 -2.3938 -0.3716 37 1 2.5689 -5.9805 -0.3596 38 1 4.0260 -7.5844 -2.3306 39 1 5.4980 -6.6885 -1.8836 40 1 5.9627 -9.0574 -2.6071 41 1 6.4974 -8.7182 -0.9409 42 1 7.5638 -11.4149 -3.0051 43 1 4.8224 -9.6844 0.9941 44 1 3.3926 -10.5401 0.3647 45 1 2.1548 -7.1809 1.5176 46 1 2.0264 -8.9327 1.8072 47 1 3.5029 -8.0585 2.2799 48 1 2.6168 -8.6799 -1.8596 49 1 1.5091 -9.2955 -0.6101 50 1 1.6371 -7.5441 -0.9014 51 1 5.1960 -2.3592 0.3710 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940748040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:37 Heat of formation + Delta-G solvation = 50.664230 kcal Electronic energy + Delta-G solvation = -31293.566406 eV Core-core repulsion = 27229.209343 eV Total energy + Delta-G solvation = -4064.357063 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.44829 -39.77916 -38.11488 -37.19573 -34.69962 -34.29682 -32.92880 -31.46197 -31.09362 -29.68990 -28.96208 -26.85937 -26.70048 -25.77442 -24.94878 -24.39187 -23.06559 -22.02486 -20.67776 -20.32263 -18.69937 -18.09489 -17.86839 -17.18897 -16.54794 -16.08354 -15.65506 -15.40955 -15.02084 -14.87571 -14.75891 -14.45029 -14.02763 -13.99681 -13.64908 -13.58699 -13.28190 -13.09011 -12.96476 -12.81489 -12.69525 -12.49998 -12.21647 -11.74923 -11.67715 -11.59219 -11.40048 -11.28092 -10.94608 -10.84656 -10.61547 -10.56314 -10.44151 -10.33825 -10.13600 -10.05306 -9.87152 -9.67012 -9.47213 -9.20991 -8.60829 -8.37787 -8.11045 -6.56625 -5.74079 -3.20225 0.44459 0.89616 2.27615 2.84215 3.34597 3.40775 3.47478 3.48714 3.75476 3.89195 3.99668 4.10877 4.52667 4.57100 4.71229 4.77268 4.82162 4.99997 5.08524 5.11470 5.17218 5.30561 5.33277 5.39275 5.41807 5.49245 5.65896 5.84529 5.93954 5.97697 6.04383 6.18484 6.20139 6.23962 6.35018 6.43021 6.49838 6.60633 6.62474 6.63844 6.74975 6.87936 6.89668 7.00718 7.07341 7.10298 7.42269 7.50197 7.70888 7.85309 7.86619 8.45072 8.51918 9.26216 9.88657 10.48014 11.34289 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021848 B = 0.002254 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.246344 B =12417.563826 C =12636.320423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.602 5.602 3 C 0.092 3.908 4 C 0.369 3.631 5 C -0.008 4.008 6 N -0.374 5.374 7 C -0.041 4.041 8 C 0.577 3.423 9 O -0.538 6.538 10 N -0.701 5.701 11 C 0.163 3.837 12 H 0.082 0.918 13 C -0.150 4.150 14 C 0.177 3.823 15 N -0.588 5.588 16 C -0.253 4.253 17 H 0.064 0.936 18 C 0.005 3.995 19 N -0.899 5.899 20 Si 0.900 3.100 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.160 3.840 25 C -0.088 4.088 26 C -0.137 4.137 27 C -0.131 4.131 28 C 0.169 3.831 29 N -0.508 5.508 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.171 0.829 37 H 0.404 0.596 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.021 0.979 42 H 0.254 0.746 43 H 0.019 0.981 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.051 0.949 48 H 0.074 0.926 49 H 0.049 0.951 50 H 0.036 0.964 51 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.681 23.284 6.167 28.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.315 5.315 3 C -0.051 4.051 4 C 0.129 3.871 5 C -0.181 4.181 6 N -0.090 5.090 7 C -0.182 4.182 8 C 0.360 3.640 9 O -0.415 6.415 10 N -0.351 5.351 11 C 0.059 3.941 12 H 0.100 0.900 13 C -0.190 4.190 14 C 0.051 3.949 15 N -0.310 5.310 16 C -0.383 4.383 17 H 0.081 0.919 18 C -0.194 4.194 19 N -0.543 5.543 20 Si 0.731 3.269 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.033 3.967 25 C -0.091 4.091 26 C -0.195 4.195 27 C -0.189 4.189 28 C 0.008 3.992 29 N -0.230 5.230 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.188 0.812 37 H 0.240 0.760 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.040 0.960 42 H 0.064 0.936 43 H 0.037 0.963 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.093 0.907 49 H 0.068 0.932 50 H 0.055 0.945 51 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -13.716 23.315 6.211 27.753 hybrid contribution -0.648 -0.436 -0.805 1.121 sum -14.364 22.879 5.406 27.549 Atomic orbital electron populations 1.21906 0.77648 1.03780 1.02300 1.46173 1.05631 1.03031 1.76627 1.21693 0.97976 0.83583 1.01853 1.19622 0.89985 0.87568 0.89916 1.23214 1.01454 0.86877 1.06522 1.68136 1.07659 1.28430 1.04789 1.21863 0.90825 0.96098 1.09434 1.17485 0.86417 0.82738 0.77322 1.90806 1.13502 1.86721 1.50497 1.46165 1.12308 1.05975 1.70633 1.21060 0.93836 0.80381 0.98800 0.89962 1.22639 1.00478 1.00540 0.95364 1.20704 0.90369 0.83343 1.00528 1.44014 1.53769 1.15806 1.17389 1.19125 0.96230 1.01362 1.21544 0.91858 1.25145 0.94749 0.98221 1.01261 1.70033 0.98803 1.45660 1.39798 0.86309 0.77252 0.81229 0.82156 1.21534 1.21832 1.20388 1.20914 0.94134 0.92612 0.89049 1.21354 0.95937 0.97149 0.94649 1.21810 1.00390 1.00709 0.96580 1.21789 0.96994 0.99454 1.00638 1.23539 1.01444 0.85895 0.88361 1.68119 1.06473 1.29403 1.19003 0.89913 0.91556 0.91544 0.92870 0.91329 0.89776 0.81205 0.75985 0.92167 0.92874 0.89892 0.96043 0.93645 0.96278 0.92390 0.93332 0.92755 0.92993 0.90675 0.93169 0.94539 0.80035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.29 10.60 59.85 0.63 0.93 16 2 N -0.60 -4.16 3.37 -189.52 -0.64 -4.80 16 3 C 0.09 0.52 10.58 59.85 0.63 1.15 16 4 C 0.37 3.63 7.34 -155.00 -1.14 2.49 16 5 C -0.01 -0.08 10.43 -17.10 -0.18 -0.26 16 6 N -0.37 -4.58 9.69 -9.44 -0.09 -4.67 16 7 C -0.04 -0.57 6.74 -82.89 -0.56 -1.13 16 8 C 0.58 9.38 7.77 -12.34 -0.10 9.29 16 9 O -0.54 -10.30 15.99 5.31 0.08 -10.21 16 10 N -0.70 -10.97 4.28 -54.71 -0.23 -11.21 16 11 C 0.16 2.92 1.57 -67.88 -0.11 2.82 16 12 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 13 C -0.15 -3.04 5.31 -26.61 -0.14 -3.18 16 14 C 0.18 4.30 5.27 -3.67 -0.02 4.28 16 15 N -0.59 -14.47 2.41 -172.26 -0.42 -14.88 16 16 C -0.25 -6.82 9.55 -15.06 -0.14 -6.97 16 17 H 0.06 1.68 7.88 -52.49 -0.41 1.27 16 18 C 0.01 0.15 4.92 -17.43 -0.09 0.07 16 19 N -0.90 -26.31 11.38 55.49 0.63 -25.68 16 20 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.16 3.32 5.19 -3.71 -0.02 3.30 16 25 C -0.09 -1.50 0.56 -154.39 -0.09 -1.58 16 26 C -0.14 -1.96 8.31 37.16 0.31 -1.65 16 27 C -0.13 -2.13 7.83 37.16 0.29 -1.84 16 28 C 0.17 2.12 10.76 -17.02 -0.18 1.93 16 29 N -0.51 -5.86 9.22 -11.95 -0.11 -5.97 16 30 H 0.08 0.22 5.37 -51.93 -0.28 -0.06 16 31 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 32 H 0.07 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.23 8.07 -51.93 -0.42 -0.18 16 35 H 0.08 0.59 7.25 -51.93 -0.38 0.22 16 36 H 0.17 1.05 5.87 -52.48 -0.31 0.74 16 37 H 0.40 5.74 6.00 -40.82 -0.24 5.50 16 38 H 0.06 1.21 6.34 -51.93 -0.33 0.88 16 39 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 2.25 6.30 -51.93 -0.33 1.92 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 1.18 7.94 -51.93 -0.41 0.77 16 45 H 0.05 0.64 7.36 -51.93 -0.38 0.26 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 1.42 5.98 -51.93 -0.31 1.11 16 49 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.04 0.51 6.58 -51.93 -0.34 0.16 16 51 H 0.18 2.12 7.63 -52.49 -0.40 1.72 16 LS Contribution 397.70 15.07 5.99 5.99 Total: -1.00 -32.48 397.70 -8.58 -41.05 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -7.88 Total: 4.04 kcal Atomic # 6 Polarization: 10.53 SS G_CDS: -0.89 Total: 9.64 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -0.86 Total: -67.21 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.21 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.48 -8.58 -41.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940748040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.718 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds