Wall clock time and date at job start Wed Apr 1 2020 04:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46502 * 119.99307 * 2 1 4 4 C 1.38399 * 120.00291 * 180.02562 * 2 1 3 5 5 C 1.39891 * 119.99638 * 4.99612 * 4 2 1 6 6 N 1.31457 * 120.00984 * 179.97438 * 5 4 2 7 7 C 1.33277 * 120.01237 * 359.97438 * 6 5 4 8 8 C 1.47812 * 120.00279 * 179.97438 * 7 6 5 9 9 O 1.21566 * 120.00196 * 180.02562 * 8 7 6 10 10 N 1.34781 * 120.00407 * 0.02562 * 8 7 6 11 11 C 1.46498 * 120.00446 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.44885 * 325.04039 * 11 10 8 13 13 C 1.53036 * 109.45538 * 85.00572 * 11 10 8 14 14 C 1.53194 * 109.31271 * 181.38445 * 13 11 10 15 15 N 1.46924 * 108.77712 * 305.36890 * 14 13 11 16 16 C 1.36937 * 120.62681 * 233.58734 * 15 14 13 17 17 H 1.08002 * 120.00276 * 152.41267 * 16 15 14 18 18 C 1.38810 * 120.00125 * 332.40172 * 16 15 14 19 19 N 1.31621 * 119.99993 * 334.90693 * 18 16 15 20 20 Si 1.86807 * 120.00054 * 154.90617 * 18 16 15 21 21 H 1.48495 * 109.47293 * 90.00337 * 20 18 16 22 22 H 1.48504 * 109.47150 * 210.00630 * 20 18 16 23 23 H 1.48498 * 109.46688 * 330.00245 * 20 18 16 24 24 C 1.46918 * 118.74069 * 53.85401 * 15 14 13 25 25 C 1.53043 * 109.45923 * 205.07169 * 11 10 8 26 26 C 1.52997 * 109.49708 * 298.56532 * 25 11 10 27 27 C 1.52996 * 109.49819 * 58.66852 * 25 11 10 28 28 C 1.39409 * 119.99193 * 0.28227 * 7 6 5 29 29 N 1.32051 * 119.98650 * 359.44388 * 28 7 6 30 30 H 1.09003 * 109.46742 * 269.99699 * 1 2 3 31 31 H 1.08994 * 109.47546 * 30.00062 * 1 2 3 32 32 H 1.09002 * 109.46917 * 150.00033 * 1 2 3 33 33 H 1.09000 * 109.46737 * 239.99931 * 3 2 1 34 34 H 1.08993 * 109.47265 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.46850 * 120.00594 * 3 2 1 36 36 H 1.07999 * 119.99535 * 0.02562 * 5 4 2 37 37 H 0.97009 * 119.99644 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.50186 * 61.43427 * 13 11 10 39 39 H 1.09000 * 109.52726 * 301.35179 * 13 11 10 40 40 H 1.09001 * 109.59137 * 185.57356 * 14 13 11 41 41 H 1.09003 * 109.70147 * 65.22543 * 14 13 11 42 42 H 0.96996 * 120.00154 * 354.25419 * 19 18 16 43 43 H 1.08993 * 109.58736 * 65.93126 * 24 15 14 44 44 H 1.08999 * 109.59143 * 186.35839 * 24 15 14 45 45 H 1.08999 * 109.47248 * 60.00715 * 26 25 11 46 46 H 1.09003 * 109.46698 * 179.97438 * 26 25 11 47 47 H 1.08999 * 109.47646 * 300.00487 * 26 25 11 48 48 H 1.08998 * 109.47165 * 59.99571 * 27 25 11 49 49 H 1.08997 * 109.47323 * 179.97438 * 27 25 11 50 50 H 1.09005 * 109.46925 * 299.99762 * 27 25 11 51 51 H 1.08005 * 120.00215 * 179.72415 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1571 -1.1985 -0.0005 5 6 1.4616 -2.4077 -0.1066 6 7 2.1188 -3.5462 -0.1076 7 6 3.4478 -3.5490 -0.0082 8 6 4.1864 -4.8293 -0.0088 9 8 5.3987 -4.8318 0.0824 10 7 3.5160 -5.9941 -0.1105 11 6 4.2481 -7.2631 -0.1116 12 1 5.2002 -7.1322 -0.6256 13 6 4.5039 -7.7053 1.3309 14 6 5.2995 -9.0144 1.3260 15 7 4.5797 -10.0022 0.5106 16 6 4.2653 -11.2329 1.0221 17 1 3.4045 -11.7686 0.6499 18 6 5.0529 -11.7921 2.0190 19 7 6.3145 -11.4364 2.1381 20 14 4.3223 -13.0495 3.1915 21 1 4.5015 -14.4126 2.6301 22 1 5.0106 -12.9605 4.5044 23 1 2.8742 -12.7749 3.3721 24 6 4.2089 -9.6466 -0.8658 25 6 3.4206 -8.3284 -0.8345 26 6 2.0984 -8.5376 -0.0936 27 6 3.1375 -7.8704 -2.2666 28 6 4.1408 -2.3444 0.1029 29 7 3.4810 -1.2006 0.0985 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 2.8241 1.3266 -0.8900 34 1 1.4891 2.0972 0.0005 35 1 2.8241 1.3266 0.8899 36 1 0.3848 -2.4057 -0.1885 37 1 2.5487 -5.9921 -0.1836 38 1 3.5517 -7.8602 1.8383 39 1 5.0730 -6.9357 1.8524 40 1 5.3991 -9.3854 2.3461 41 1 6.2887 -8.8417 0.9019 42 1 6.7167 -10.8480 1.4801 43 1 5.1099 -9.5225 -1.4665 44 1 3.5885 -10.4348 -1.2924 45 1 1.5426 -7.6002 -0.0704 46 1 1.5092 -9.2961 -0.6091 47 1 2.3010 -8.8652 0.9260 48 1 4.0800 -7.7230 -2.7939 49 1 2.5485 -8.6296 -2.7811 50 1 2.5826 -6.9324 -2.2451 51 1 5.2175 -2.3466 0.1880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940748043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:42 Heat of formation + Delta-G solvation = 46.804033 kcal Electronic energy + Delta-G solvation = -31352.379660 eV Core-core repulsion = 27287.855206 eV Total energy + Delta-G solvation = -4064.524454 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.46693 -39.85895 -38.20656 -37.24685 -34.89261 -34.41210 -33.04151 -31.49827 -31.07224 -29.67894 -28.96889 -26.91939 -26.76741 -25.69996 -24.88392 -24.40771 -23.12291 -22.13139 -20.65200 -20.36040 -18.74970 -18.11577 -17.88308 -17.45286 -17.00770 -16.12202 -15.69565 -15.43163 -15.03420 -14.89534 -14.70541 -14.30338 -14.10280 -14.00067 -13.73226 -13.55177 -13.37687 -13.34310 -13.15035 -12.96560 -12.72244 -12.48483 -12.29228 -11.93541 -11.80970 -11.61581 -11.52416 -11.25581 -10.90925 -10.86956 -10.70000 -10.53520 -10.43754 -10.29022 -10.08806 -10.06938 -9.88858 -9.79357 -9.34502 -9.19357 -8.65899 -8.29678 -8.15210 -6.82182 -6.01192 -3.16860 0.42221 0.87680 2.24536 2.80391 3.29162 3.52862 3.57247 3.72233 3.72499 3.90342 3.95834 4.07588 4.49276 4.63404 4.67428 4.73131 4.82888 4.94665 5.05497 5.08974 5.10662 5.21169 5.27500 5.33841 5.35877 5.42874 5.57122 5.79616 5.84739 5.88106 5.96788 6.06298 6.15223 6.16108 6.26153 6.32116 6.39670 6.48135 6.54208 6.57806 6.61785 6.75776 6.78424 6.89371 6.95593 7.07054 7.15567 7.27669 7.48017 7.80231 8.05809 8.38842 8.63198 9.17130 9.90408 10.35278 11.27504 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.002274 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.416945 B =12309.376795 C =12438.742812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.601 5.601 3 C 0.099 3.901 4 C 0.368 3.632 5 C -0.007 4.007 6 N -0.375 5.375 7 C -0.043 4.043 8 C 0.577 3.423 9 O -0.539 6.539 10 N -0.701 5.701 11 C 0.163 3.837 12 H 0.082 0.918 13 C -0.145 4.145 14 C 0.153 3.847 15 N -0.596 5.596 16 C -0.346 4.346 17 H 0.056 0.944 18 C -0.025 4.025 19 N -0.916 5.916 20 Si 1.064 2.936 21 H -0.295 1.295 22 H -0.287 1.287 23 H -0.293 1.293 24 C 0.162 3.838 25 C -0.088 4.088 26 C -0.131 4.131 27 C -0.137 4.137 28 C 0.169 3.831 29 N -0.506 5.506 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.170 0.830 37 H 0.404 0.596 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.019 0.981 42 H 0.270 0.730 43 H 0.018 0.982 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.050 0.950 47 H 0.075 0.925 48 H 0.051 0.949 49 H 0.054 0.946 50 H 0.049 0.951 51 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.767 24.586 -6.462 28.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.314 5.314 3 C -0.044 4.044 4 C 0.128 3.872 5 C -0.179 4.179 6 N -0.091 5.091 7 C -0.183 4.183 8 C 0.361 3.639 9 O -0.416 6.416 10 N -0.351 5.351 11 C 0.059 3.941 12 H 0.100 0.900 13 C -0.185 4.185 14 C 0.027 3.973 15 N -0.319 5.319 16 C -0.475 4.475 17 H 0.073 0.927 18 C -0.227 4.227 19 N -0.556 5.556 20 Si 0.894 3.106 21 H -0.223 1.223 22 H -0.213 1.213 23 H -0.220 1.220 24 C 0.035 3.965 25 C -0.091 4.091 26 C -0.188 4.188 27 C -0.195 4.195 28 C 0.008 3.992 29 N -0.229 5.229 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.187 0.813 37 H 0.241 0.759 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.100 0.900 41 H 0.037 0.963 42 H 0.081 0.919 43 H 0.036 0.964 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.069 0.931 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.068 0.932 51 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -12.650 23.742 -5.040 27.370 hybrid contribution -0.901 1.105 -1.449 2.033 sum -13.551 24.848 -6.490 29.037 Atomic orbital electron populations 1.21906 0.77544 1.03704 1.02343 1.46209 1.05670 1.03086 1.76390 1.21651 0.96713 0.83350 1.02669 1.19609 0.89891 0.87508 0.90169 1.23188 1.01316 0.86646 1.06779 1.68129 1.07866 1.28779 1.04291 1.21824 0.90537 0.95926 1.10060 1.17498 0.86555 0.82739 0.77068 1.90804 1.12944 1.87031 1.50793 1.46136 1.11286 1.05458 1.72233 1.21023 0.95040 0.80702 0.97290 0.90018 1.22508 1.01547 0.99320 0.95097 1.20925 0.92240 0.86548 0.97606 1.44125 1.67573 1.12504 1.07671 1.19932 1.09133 0.95575 1.22884 0.92656 1.25805 0.94307 1.01216 1.01391 1.70741 1.10170 1.35439 1.39278 0.83558 0.74771 0.75420 0.76836 1.22272 1.21261 1.21958 1.20991 0.95480 0.92386 0.87667 1.21416 0.96617 0.96915 0.94108 1.21775 0.95177 0.99534 1.02322 1.21808 1.01167 1.00445 0.96081 1.23533 1.01716 0.85915 0.88059 1.68148 1.06215 1.29576 1.18950 0.92120 0.90299 0.90562 0.92079 0.90713 0.91838 0.81263 0.75897 0.91791 0.92650 0.90006 0.96343 0.91906 0.96422 0.92228 0.94465 0.93129 0.90645 0.93011 0.92701 0.93225 0.80067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.28 10.25 59.85 0.61 0.89 16 2 N -0.60 -4.06 3.37 -189.51 -0.64 -4.70 16 3 C 0.10 0.54 10.19 59.85 0.61 1.14 16 4 C 0.37 3.61 7.37 -155.02 -1.14 2.47 16 5 C -0.01 -0.07 10.42 -17.09 -0.18 -0.24 16 6 N -0.37 -4.59 9.69 -9.45 -0.09 -4.68 16 7 C -0.04 -0.58 6.74 -82.89 -0.56 -1.14 16 8 C 0.58 9.35 7.77 -12.34 -0.10 9.25 16 9 O -0.54 -10.23 15.99 5.31 0.08 -10.15 16 10 N -0.70 -10.93 4.28 -54.72 -0.23 -11.16 16 11 C 0.16 2.91 1.57 -67.89 -0.11 2.80 16 12 H 0.08 1.62 7.57 -51.93 -0.39 1.23 16 13 C -0.14 -2.91 5.31 -26.61 -0.14 -3.05 16 14 C 0.15 3.67 4.69 -3.71 -0.02 3.65 16 15 N -0.60 -14.65 2.28 -172.06 -0.39 -15.04 16 16 C -0.35 -9.49 9.49 -15.06 -0.14 -9.64 16 17 H 0.06 1.52 7.94 -52.49 -0.42 1.11 16 18 C -0.03 -0.71 4.68 -17.43 -0.08 -0.79 16 19 N -0.92 -27.61 12.40 55.49 0.69 -26.92 16 20 Si 1.06 25.36 29.99 -169.99 -5.10 20.27 16 21 H -0.30 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.16 3.36 5.24 -3.49 -0.02 3.35 16 25 C -0.09 -1.50 0.56 -154.16 -0.09 -1.58 16 26 C -0.13 -2.15 7.84 37.16 0.29 -1.86 16 27 C -0.14 -1.97 8.31 37.16 0.31 -1.66 16 28 C 0.17 2.12 10.76 -17.02 -0.18 1.94 16 29 N -0.51 -5.87 9.71 -11.96 -0.12 -5.98 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.11 7.92 -51.93 -0.41 -0.30 16 32 H 0.08 0.19 5.98 -51.93 -0.31 -0.12 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.20 7.79 -51.93 -0.40 -0.20 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.17 1.05 6.02 -52.49 -0.32 0.73 16 37 H 0.40 5.75 6.00 -40.82 -0.24 5.50 16 38 H 0.06 1.29 6.34 -51.93 -0.33 0.96 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 2.19 6.29 -51.93 -0.33 1.86 16 41 H 0.02 0.46 7.86 -51.93 -0.41 0.05 16 42 H 0.27 8.23 6.71 -40.82 -0.27 7.96 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 1.24 7.93 -51.93 -0.41 0.82 16 45 H 0.04 0.52 6.58 -51.93 -0.34 0.18 16 46 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 1.46 5.97 -51.93 -0.31 1.14 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 49 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.05 0.66 7.36 -51.93 -0.38 0.27 16 51 H 0.18 2.12 7.63 -52.48 -0.40 1.71 16 LS Contribution 397.27 15.07 5.99 5.99 Total: -1.00 -33.26 397.27 -8.60 -41.86 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.86 Total: 4.98 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -0.93 Total: 5.53 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -0.79 Total: -68.48 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.08 Total: -10.15 kcal Atomic # 14 Polarization: 25.36 SS G_CDS: -5.10 Total: 20.27 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.26 -8.60 -41.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940748043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.663 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds