Wall clock time and date at job start Wed Apr 1 2020 04:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46502 * 119.99307 * 2 1 4 4 C 1.38399 * 120.00291 * 180.02562 * 2 1 3 5 5 C 1.39891 * 119.99638 * 4.99612 * 4 2 1 6 6 N 1.31457 * 120.00984 * 179.97438 * 5 4 2 7 7 C 1.33277 * 120.01237 * 359.97438 * 6 5 4 8 8 C 1.47812 * 120.00279 * 179.97438 * 7 6 5 9 9 O 1.21566 * 120.00196 * 180.02562 * 8 7 6 10 10 N 1.34781 * 120.00407 * 0.02562 * 8 7 6 11 11 C 1.46498 * 120.00446 * 179.97438 * 10 8 7 12 12 H 1.08992 * 109.44885 * 325.04039 * 11 10 8 13 13 C 1.53036 * 109.45538 * 85.00572 * 11 10 8 14 14 C 1.53194 * 109.31271 * 181.38445 * 13 11 10 15 15 N 1.46924 * 108.77712 * 305.36890 * 14 13 11 16 16 C 1.36937 * 120.62681 * 233.58734 * 15 14 13 17 17 H 1.08002 * 120.00276 * 152.41267 * 16 15 14 18 18 C 1.38810 * 120.00125 * 332.40172 * 16 15 14 19 19 N 1.31621 * 119.99993 * 334.90693 * 18 16 15 20 20 Si 1.86807 * 120.00054 * 154.90617 * 18 16 15 21 21 H 1.48495 * 109.47293 * 90.00337 * 20 18 16 22 22 H 1.48504 * 109.47150 * 210.00630 * 20 18 16 23 23 H 1.48498 * 109.46688 * 330.00245 * 20 18 16 24 24 C 1.46918 * 118.74069 * 53.85401 * 15 14 13 25 25 C 1.53043 * 109.45923 * 205.07169 * 11 10 8 26 26 C 1.52997 * 109.49708 * 298.56532 * 25 11 10 27 27 C 1.52996 * 109.49819 * 58.66852 * 25 11 10 28 28 C 1.39409 * 119.99193 * 0.28227 * 7 6 5 29 29 N 1.32051 * 119.98650 * 359.44388 * 28 7 6 30 30 H 1.09003 * 109.46742 * 269.99699 * 1 2 3 31 31 H 1.08994 * 109.47546 * 30.00062 * 1 2 3 32 32 H 1.09002 * 109.46917 * 150.00033 * 1 2 3 33 33 H 1.09000 * 109.46737 * 239.99931 * 3 2 1 34 34 H 1.08993 * 109.47265 * 0.02562 * 3 2 1 35 35 H 1.09000 * 109.46850 * 120.00594 * 3 2 1 36 36 H 1.07999 * 119.99535 * 0.02562 * 5 4 2 37 37 H 0.97009 * 119.99644 * 0.02562 * 10 8 7 38 38 H 1.09000 * 109.50186 * 61.43427 * 13 11 10 39 39 H 1.09000 * 109.52726 * 301.35179 * 13 11 10 40 40 H 1.09001 * 109.59137 * 185.57356 * 14 13 11 41 41 H 1.09003 * 109.70147 * 65.22543 * 14 13 11 42 42 H 0.96996 * 120.00154 * 354.25419 * 19 18 16 43 43 H 1.08993 * 109.58736 * 65.93126 * 24 15 14 44 44 H 1.08999 * 109.59143 * 186.35839 * 24 15 14 45 45 H 1.08999 * 109.47248 * 60.00715 * 26 25 11 46 46 H 1.09003 * 109.46698 * 179.97438 * 26 25 11 47 47 H 1.08999 * 109.47646 * 300.00487 * 26 25 11 48 48 H 1.08998 * 109.47165 * 59.99571 * 27 25 11 49 49 H 1.08997 * 109.47323 * 179.97438 * 27 25 11 50 50 H 1.09005 * 109.46925 * 299.99762 * 27 25 11 51 51 H 1.08005 * 120.00215 * 179.72415 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1571 -1.1985 -0.0005 5 6 1.4616 -2.4077 -0.1066 6 7 2.1188 -3.5462 -0.1076 7 6 3.4478 -3.5490 -0.0082 8 6 4.1864 -4.8293 -0.0088 9 8 5.3987 -4.8318 0.0824 10 7 3.5160 -5.9941 -0.1105 11 6 4.2481 -7.2631 -0.1116 12 1 5.2002 -7.1322 -0.6256 13 6 4.5039 -7.7053 1.3309 14 6 5.2995 -9.0144 1.3260 15 7 4.5797 -10.0022 0.5106 16 6 4.2653 -11.2329 1.0221 17 1 3.4045 -11.7686 0.6499 18 6 5.0529 -11.7921 2.0190 19 7 6.3145 -11.4364 2.1381 20 14 4.3223 -13.0495 3.1915 21 1 4.5015 -14.4126 2.6301 22 1 5.0106 -12.9605 4.5044 23 1 2.8742 -12.7749 3.3721 24 6 4.2089 -9.6466 -0.8658 25 6 3.4206 -8.3284 -0.8345 26 6 2.0984 -8.5376 -0.0936 27 6 3.1375 -7.8704 -2.2666 28 6 4.1408 -2.3444 0.1029 29 7 3.4810 -1.2006 0.0985 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3633 -0.8900 -0.5138 33 1 2.8241 1.3266 -0.8900 34 1 1.4891 2.0972 0.0005 35 1 2.8241 1.3266 0.8899 36 1 0.3848 -2.4057 -0.1885 37 1 2.5487 -5.9921 -0.1836 38 1 3.5517 -7.8602 1.8383 39 1 5.0730 -6.9357 1.8524 40 1 5.3991 -9.3854 2.3461 41 1 6.2887 -8.8417 0.9019 42 1 6.7167 -10.8480 1.4801 43 1 5.1099 -9.5225 -1.4665 44 1 3.5885 -10.4348 -1.2924 45 1 1.5426 -7.6002 -0.0704 46 1 1.5092 -9.2961 -0.6091 47 1 2.3010 -8.8652 0.9260 48 1 4.0800 -7.7230 -2.7939 49 1 2.5485 -8.6296 -2.7811 50 1 2.5826 -6.9324 -2.2451 51 1 5.2175 -2.3466 0.1880 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940748043.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:41 Heat of formation + Delta-G solvation = 25.088954 kcal Electronic energy + Delta-G solvation = -31353.321297 eV Core-core repulsion = 27287.855206 eV Total energy + Delta-G solvation = -4065.466090 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.33797 -41.22535 -39.58908 -37.95541 -36.63050 -35.35158 -34.45538 -33.20735 -32.21723 -31.31335 -29.36002 -28.20701 -27.76013 -27.25456 -26.51866 -25.24468 -24.38779 -23.31910 -22.40790 -21.65433 -20.05268 -19.44931 -19.06593 -18.65070 -18.17478 -17.01626 -16.80824 -16.46883 -16.20428 -16.05829 -15.92691 -15.58640 -15.45462 -15.38848 -15.28900 -15.07821 -14.71787 -14.43872 -14.23816 -13.92367 -13.54690 -13.48280 -13.33339 -12.91419 -12.86629 -12.77646 -12.69289 -12.59390 -12.54126 -12.43798 -12.42877 -12.30797 -11.90275 -11.78791 -11.61802 -11.44615 -11.39446 -11.16951 -11.10366 -10.43025 -10.21607 -10.05934 -8.90878 -8.82175 -8.21799 -5.35992 -0.47305 0.05879 1.59298 1.67630 1.68571 1.69997 1.84608 2.07905 2.67762 2.77095 3.02730 3.20450 3.24488 3.34927 3.51911 3.62351 3.85558 3.87791 3.97746 4.00468 4.20464 4.26590 4.33870 4.34902 4.50157 4.50649 4.54837 4.56616 4.73412 4.74320 4.76598 4.84459 4.89038 4.91041 4.92415 4.95854 5.03890 5.05318 5.13043 5.15702 5.21984 5.29687 5.35188 5.47812 5.61824 5.63287 5.88239 5.92541 6.25189 6.40627 6.50588 6.76183 7.06509 7.15351 7.79970 8.25867 9.03729 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021089 B = 0.002274 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.416945 B =12309.376795 C =12438.742812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.591 5.591 3 C 0.094 3.906 4 C 0.367 3.633 5 C 0.005 3.995 6 N -0.384 5.384 7 C -0.072 4.072 8 C 0.578 3.422 9 O -0.576 6.576 10 N -0.691 5.691 11 C 0.175 3.825 12 H 0.059 0.941 13 C -0.130 4.130 14 C 0.163 3.837 15 N -0.608 5.608 16 C -0.344 4.344 17 H 0.057 0.943 18 C -0.081 4.081 19 N -0.946 5.946 20 Si 1.115 2.885 21 H -0.283 1.283 22 H -0.294 1.294 23 H -0.273 1.273 24 C 0.158 3.842 25 C -0.077 4.077 26 C -0.124 4.124 27 C -0.130 4.130 28 C 0.169 3.831 29 N -0.525 5.525 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.052 0.948 36 H 0.209 0.791 37 H 0.415 0.585 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.048 0.952 41 H -0.004 1.004 42 H 0.252 0.748 43 H 0.009 0.991 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.059 0.941 47 H 0.044 0.956 48 H 0.047 0.953 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.004 26.787 -7.394 33.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.301 5.301 3 C -0.049 4.049 4 C 0.125 3.875 5 C -0.170 4.170 6 N -0.099 5.099 7 C -0.210 4.210 8 C 0.364 3.636 9 O -0.456 6.456 10 N -0.341 5.341 11 C 0.070 3.930 12 H 0.077 0.923 13 C -0.170 4.170 14 C 0.037 3.963 15 N -0.332 5.332 16 C -0.473 4.473 17 H 0.075 0.925 18 C -0.277 4.277 19 N -0.589 5.589 20 Si 0.940 3.060 21 H -0.210 1.210 22 H -0.221 1.221 23 H -0.198 1.198 24 C 0.032 3.968 25 C -0.079 4.079 26 C -0.181 4.181 27 C -0.187 4.187 28 C 0.008 3.992 29 N -0.248 5.248 30 H 0.090 0.910 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.072 0.928 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.225 0.775 37 H 0.253 0.747 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.014 0.986 42 H 0.062 0.938 43 H 0.027 0.973 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -16.937 25.984 -6.009 31.594 hybrid contribution 0.284 0.674 -1.213 1.416 sum -16.654 26.658 -7.222 32.251 Atomic orbital electron populations 1.22267 0.74994 1.05610 1.03625 1.46658 1.07267 1.02429 1.73702 1.21796 0.97548 0.83767 1.01777 1.19981 0.89539 0.89013 0.89017 1.23807 1.02784 0.85669 1.04763 1.68067 1.07014 1.30086 1.04772 1.21281 0.91313 0.94495 1.13897 1.17884 0.86249 0.83612 0.75830 1.90778 1.14724 1.87676 1.52442 1.45867 1.11494 1.04416 1.72367 1.20658 0.94816 0.82243 0.95250 0.92268 1.22286 1.00718 0.96882 0.97079 1.20670 0.92009 0.88222 0.95424 1.44290 1.67576 1.11964 1.09370 1.20195 1.08442 0.96220 1.22476 0.92540 1.27182 0.94045 1.03108 1.03348 1.70869 1.11530 1.36994 1.39494 0.82876 0.74928 0.73775 0.74449 1.21016 1.22061 1.19836 1.21160 0.95635 0.94614 0.85426 1.21253 0.96135 0.94253 0.96275 1.21698 0.94863 1.01288 1.00286 1.21744 1.01574 1.01748 0.93658 1.23447 1.01728 0.86085 0.87946 1.68179 1.07391 1.28899 1.20379 0.91029 0.87849 0.89334 0.92799 0.87320 0.92944 0.77479 0.74682 0.91413 0.93299 0.93377 0.98571 0.93794 0.97322 0.91969 0.91556 0.92155 0.93693 0.93415 0.91013 0.91392 0.80543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.12 10.25 127.77 1.31 1.43 16 2 N -0.59 -5.90 3.37 -753.48 -2.54 -8.45 16 3 C 0.09 0.75 10.19 127.77 1.30 2.05 16 4 C 0.37 6.28 7.37 133.35 0.98 7.26 16 5 C 0.00 0.08 10.42 85.15 0.89 0.97 16 6 N -0.38 -8.59 9.69 -183.80 -1.78 -10.37 16 7 C -0.07 -1.93 6.74 41.74 0.28 -1.65 16 8 C 0.58 18.97 7.77 86.78 0.67 19.65 16 9 O -0.58 -22.91 15.99 -3.92 -0.06 -22.97 16 10 N -0.69 -21.16 4.28 -445.31 -1.91 -23.07 16 11 C 0.18 6.34 1.57 45.02 0.07 6.41 16 12 H 0.06 2.44 7.57 -2.39 -0.02 2.43 16 13 C -0.13 -5.41 5.31 30.67 0.16 -5.25 16 14 C 0.16 8.29 4.69 86.36 0.41 8.70 16 15 N -0.61 -30.90 2.28 -698.27 -1.59 -32.49 16 16 C -0.34 -19.20 9.49 84.03 0.80 -18.40 16 17 H 0.06 3.11 7.94 -2.91 -0.02 3.08 16 18 C -0.08 -4.69 4.68 84.86 0.40 -4.29 16 19 N -0.95 -59.52 12.40 21.65 0.27 -59.25 16 20 Si 1.11 51.84 29.99 68.60 2.06 53.90 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 C 0.16 6.61 5.24 86.51 0.45 7.07 16 25 C -0.08 -2.55 0.56 -51.96 -0.03 -2.58 16 26 C -0.12 -3.83 7.84 71.98 0.56 -3.27 16 27 C -0.13 -3.42 8.31 71.98 0.60 -2.82 16 28 C 0.17 4.27 10.76 84.94 0.91 5.18 16 29 N -0.52 -11.69 9.71 -191.74 -1.86 -13.55 16 30 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.10 -0.26 7.92 -2.39 -0.02 -0.28 16 32 H 0.09 -0.03 5.98 -2.39 -0.01 -0.05 16 33 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.11 0.14 7.79 -2.39 -0.02 0.13 16 35 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.21 1.53 6.02 -2.91 -0.02 1.52 16 37 H 0.41 10.95 6.00 -92.70 -0.56 10.40 16 38 H 0.07 2.78 6.34 -2.39 -0.02 2.76 16 39 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.05 2.74 6.29 -2.39 -0.02 2.73 16 41 H 0.00 -0.20 7.86 -2.39 -0.02 -0.22 16 42 H 0.25 16.33 6.71 -92.71 -0.62 15.70 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.06 2.55 7.93 -2.39 -0.02 2.53 16 45 H 0.07 1.66 6.58 -2.39 -0.02 1.64 16 46 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.04 1.68 5.97 -2.39 -0.01 1.66 16 48 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.07 1.57 7.36 -2.38 -0.02 1.56 16 51 H 0.18 4.40 7.63 -2.91 -0.02 4.38 16 Total: -1.00 -76.59 397.27 2.89 -73.70 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.54 Total: 22.10 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 9.77 Total: 20.45 kcal Atomic # 7 Polarization: -137.76 SS G_CDS: -9.41 Total: -147.17 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.06 Total: -22.97 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 2.06 Total: 53.90 kcal Total: -76.59 2.89 -73.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940748043.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.791 kcal (2) G-P(sol) polarization free energy of solvation -76.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds