Wall clock time and date at job start Wed Apr 1 2020 05:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.52870 * 2 1 4 4 C 1.53195 * 109.49823 * 120.08890 * 2 1 3 5 5 N 1.46919 * 108.77583 * 174.58447 * 4 2 1 6 6 C 1.36934 * 120.62947 * 126.36814 * 5 4 2 7 7 H 1.08003 * 120.00181 * 332.09884 * 6 5 4 8 8 C 1.38817 * 120.00047 * 152.10323 * 6 5 4 9 9 N 1.31611 * 119.99905 * 335.48445 * 8 6 5 10 10 Si 1.86806 * 119.99955 * 155.48569 * 8 6 5 11 11 H 1.48500 * 109.46848 * 179.97438 * 10 8 6 12 12 H 1.48499 * 109.47139 * 299.99967 * 10 8 6 13 13 H 1.48498 * 109.46881 * 60.00174 * 10 8 6 14 14 C 1.46925 * 118.73874 * 306.63696 * 5 4 2 15 15 C 1.52760 * 109.00707 * 53.31506 * 14 5 4 16 16 C 1.53040 * 109.37969 * 305.58507 * 15 14 5 17 17 H 1.09004 * 109.46357 * 301.21676 * 16 15 14 18 18 N 1.46507 * 109.44863 * 181.25574 * 16 15 14 19 19 C 1.34776 * 119.99971 * 84.93495 * 18 16 15 20 20 O 1.21284 * 120.00206 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00173 * 180.02562 * 19 18 16 22 22 N 1.46498 * 109.47529 * 180.02562 * 21 19 18 23 23 C 1.35317 * 125.86794 * 124.71182 * 22 21 19 24 24 C 1.35352 * 106.17282 * 179.90809 * 23 22 21 25 25 C 1.50700 * 126.75107 * 180.12819 * 24 23 22 26 26 C 1.53002 * 117.49863 * 343.91826 * 25 24 23 27 27 C 1.52999 * 117.49948 * 275.29682 * 25 24 23 28 28 N 1.33775 * 106.49737 * 0.35243 * 24 23 22 29 29 N 1.28636 * 108.88297 * 359.77859 * 28 24 23 30 30 H 1.08995 * 109.47127 * 299.91693 * 1 2 3 31 31 H 1.09004 * 109.47046 * 59.91105 * 1 2 3 32 32 H 1.09000 * 109.47518 * 179.91894 * 1 2 3 33 33 H 1.08994 * 109.47132 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46916 * 300.08584 * 3 2 1 35 35 H 1.09003 * 109.46855 * 60.08454 * 3 2 1 36 36 H 1.08996 * 109.58840 * 54.79062 * 4 2 1 37 37 H 1.09000 * 109.57963 * 294.36999 * 4 2 1 38 38 H 0.97001 * 120.00448 * 354.24241 * 9 8 6 39 39 H 1.09000 * 109.58451 * 173.14723 * 14 5 4 40 40 H 1.09001 * 109.58786 * 293.57282 * 14 5 4 41 41 H 1.09003 * 109.56471 * 185.55352 * 15 14 5 42 42 H 1.08996 * 109.38796 * 65.51486 * 15 14 5 43 43 H 0.96994 * 119.99912 * 264.94376 * 18 16 15 44 44 H 1.09007 * 109.47210 * 300.00887 * 21 19 18 45 45 H 1.08997 * 109.46787 * 60.00149 * 21 19 18 46 46 H 1.08003 * 126.91271 * 0.02562 * 23 22 21 47 47 H 1.09004 * 115.54808 * 129.62359 * 25 24 23 48 48 H 1.09000 * 117.49269 * 0.02562 * 26 25 24 49 49 H 1.08996 * 117.49580 * 145.01884 * 26 25 24 50 50 H 1.08994 * 117.49728 * 214.98276 * 27 25 24 51 51 H 1.09002 * 117.49808 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4419 0.0000 4 6 2.0413 -0.7240 1.2495 5 7 3.5045 -0.8293 1.1695 6 6 4.2935 -0.3788 2.1940 7 1 3.9481 0.4237 2.8289 8 6 5.5374 -0.9536 2.4165 9 7 5.7755 -2.1836 2.0133 10 14 6.8731 0.0188 3.2883 11 1 8.0974 -0.8139 3.4018 12 1 7.1791 1.2464 2.5108 13 1 6.4043 0.3965 4.6458 14 6 4.1054 -1.4218 -0.0333 15 6 3.5708 -0.6951 -1.2661 16 6 2.0408 -0.7231 -1.2484 17 1 1.6966 -1.7573 -1.2355 18 7 1.5267 -0.0527 -2.4453 19 6 1.3987 -0.7378 -3.5989 20 8 1.7086 -1.9094 -3.6460 21 6 0.8705 -0.0480 -4.8303 22 7 0.8267 -1.0003 -5.9427 23 6 -0.2626 -1.3002 -6.6873 24 6 0.1431 -2.2167 -7.5969 25 6 -0.7030 -2.8667 -8.6611 26 6 -2.2227 -2.7658 -8.5149 27 6 -1.5166 -4.0993 -8.2617 28 7 1.4418 -2.4357 -7.3623 29 7 1.8165 -1.6998 -6.3759 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 3.1314 1.4409 -0.0005 34 1 1.6773 1.9565 -0.8892 35 1 1.6798 1.9557 0.8908 36 1 1.6052 -1.7217 1.2979 37 1 1.7638 -0.1581 2.1388 38 1 5.0590 -2.7178 1.6364 39 1 5.1894 -1.3162 0.0099 40 1 3.8410 -2.4776 -0.0917 41 1 3.9333 -1.1897 -2.1672 42 1 3.9159 0.3387 -1.2547 43 1 1.2786 0.8842 -2.4076 44 1 -0.1339 0.3272 -4.6339 45 1 1.5250 0.7841 -5.0895 46 1 -1.2555 -0.8893 -6.5789 47 1 -0.2913 -2.8406 -9.6701 48 1 -2.6103 -2.2289 -7.6491 49 1 -2.8110 -2.6732 -9.4277 50 1 -1.6405 -4.8840 -9.0080 51 1 -1.4395 -4.4404 -7.2293 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940795439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:15 Heat of formation + Delta-G solvation = 113.124904 kcal Electronic energy + Delta-G solvation = -31249.689002 eV Core-core repulsion = 27188.040437 eV Total energy + Delta-G solvation = -4061.648565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.45157 -40.30307 -38.47436 -37.57453 -35.02168 -34.59341 -33.40188 -31.52070 -30.90920 -30.21172 -28.72484 -27.08150 -25.89414 -24.95760 -24.33963 -23.16542 -22.65612 -21.85617 -20.95961 -20.69373 -20.30181 -18.61040 -17.79363 -17.60603 -17.24729 -16.42781 -15.75279 -15.66145 -15.45759 -14.87767 -14.72581 -14.45623 -14.31628 -14.10296 -13.87703 -13.63149 -13.50919 -13.09320 -12.84458 -12.64717 -12.39756 -12.11862 -11.90844 -11.73504 -11.71100 -11.42307 -11.39317 -11.06818 -11.04753 -10.99572 -10.82809 -10.63782 -10.58278 -10.51055 -10.39092 -10.16707 -10.03325 -9.95320 -9.78259 -9.31511 -9.21947 -8.90167 -8.38539 -6.91555 -6.08127 -3.25903 1.36736 1.93868 2.35411 2.37123 3.01553 3.43482 3.47779 3.50890 3.69378 3.91391 4.19401 4.35952 4.47228 4.49556 4.52603 4.56489 4.60258 4.87953 4.89727 5.05232 5.06092 5.16011 5.26016 5.29857 5.46329 5.48116 5.54402 5.64263 5.68492 5.73204 5.75932 5.82037 5.88363 5.93893 5.96865 6.07913 6.10578 6.22480 6.26557 6.32337 6.33720 6.48484 6.61239 6.63362 6.70874 6.79760 7.03745 7.17234 7.36989 7.97064 8.04290 8.40974 8.55367 9.08415 9.82020 10.26013 11.20471 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020561 B = 0.002230 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.499059 B =12553.565260 C =13123.433740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.131 4.131 4 C 0.161 3.839 5 N -0.595 5.595 6 C -0.350 4.350 7 H 0.056 0.944 8 C -0.023 4.023 9 N -0.914 5.914 10 Si 1.064 2.936 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.293 1.293 14 C 0.153 3.847 15 C -0.145 4.145 16 C 0.167 3.833 17 H 0.081 0.919 18 N -0.715 5.715 19 C 0.497 3.503 20 O -0.507 6.507 21 C 0.095 3.905 22 N -0.280 5.280 23 C -0.051 4.051 24 C 0.009 3.991 25 C -0.071 4.071 26 C -0.171 4.171 27 C -0.165 4.165 28 N -0.265 5.265 29 N -0.047 5.047 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.034 0.966 35 H 0.051 0.949 36 H 0.017 0.983 37 H 0.060 0.940 38 H 0.270 0.730 39 H 0.082 0.918 40 H 0.018 0.982 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.397 0.603 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.188 0.812 47 H 0.122 0.878 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.101 0.899 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.682 7.649 -17.327 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.091 4.091 3 C -0.188 4.188 4 C 0.034 3.966 5 N -0.318 5.318 6 C -0.479 4.479 7 H 0.074 0.926 8 C -0.226 4.226 9 N -0.553 5.553 10 Si 0.893 3.107 11 H -0.211 1.211 12 H -0.221 1.221 13 H -0.220 1.220 14 C 0.026 3.974 15 C -0.186 4.186 16 C 0.063 3.937 17 H 0.100 0.900 18 N -0.367 5.367 19 C 0.279 3.721 20 O -0.381 6.381 21 C -0.031 4.031 22 N -0.073 5.073 23 C -0.201 4.201 24 C -0.129 4.129 25 C -0.091 4.091 26 C -0.208 4.208 27 C -0.203 4.203 28 N -0.132 5.132 29 N -0.026 5.026 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.036 0.964 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.232 0.768 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.205 0.795 47 H 0.140 0.860 48 H 0.113 0.887 49 H 0.120 0.880 50 H 0.120 0.880 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.314 6.434 -16.621 23.498 hybrid contribution -2.978 0.982 -0.395 3.161 sum -18.292 7.416 -17.016 26.060 Atomic orbital electron populations 1.21804 0.95160 1.01445 1.01003 1.21367 0.94380 0.96877 0.96511 1.21789 1.03258 0.94158 0.99628 1.20901 0.85807 0.96262 0.93612 1.44097 0.99591 1.72305 1.15800 1.19911 1.01779 1.15292 1.10952 0.92622 1.25843 0.99952 0.96422 1.00363 1.70773 1.37135 1.06264 1.41160 0.83546 0.76512 0.75058 0.75554 1.21105 1.22083 1.22028 1.20839 0.99082 0.93626 0.83807 1.22443 0.93869 1.02004 1.00234 1.21032 0.94483 0.96478 0.81669 0.90048 1.46202 1.66013 1.14394 1.10094 1.20143 0.79819 0.87816 0.84350 1.90860 1.47925 1.15551 1.83740 1.21925 1.06321 0.90856 0.84003 1.46728 1.07659 1.29444 1.23465 1.23206 0.94689 1.04668 0.97521 1.20988 0.92456 0.99761 0.99662 1.19985 0.90659 1.01786 0.96658 1.23012 0.93170 1.00983 1.03650 1.23012 1.02719 0.91348 1.03197 1.75109 1.11178 1.17523 1.09361 1.78507 1.13115 1.03573 1.07411 0.92536 0.93460 0.92971 0.90505 0.94691 0.92964 0.96479 0.92135 0.91890 0.89928 0.96392 0.92502 0.91733 0.76801 0.84948 0.85334 0.79505 0.86049 0.88666 0.87962 0.88033 0.88575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.31 37.16 0.31 -1.32 16 2 C -0.09 -1.33 0.56 -154.39 -0.09 -1.42 16 3 C -0.13 -1.85 7.83 37.16 0.29 -1.56 16 4 C 0.16 3.16 5.20 -3.71 -0.02 3.14 16 5 N -0.59 -14.10 2.29 -172.59 -0.40 -14.50 16 6 C -0.35 -9.35 9.49 -15.06 -0.14 -9.50 16 7 H 0.06 1.49 7.94 -52.48 -0.42 1.07 16 8 C -0.02 -0.65 4.70 -17.43 -0.08 -0.73 16 9 N -0.91 -27.23 12.42 55.49 0.69 -26.54 16 10 Si 1.06 24.86 29.98 -169.99 -5.10 19.76 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.15 3.55 4.66 -3.93 -0.02 3.54 16 15 C -0.15 -2.73 5.29 -26.83 -0.14 -2.88 16 16 C 0.17 2.63 1.57 -67.88 -0.11 2.52 16 17 H 0.08 1.51 7.58 -51.93 -0.39 1.12 16 18 N -0.71 -8.32 4.29 -53.76 -0.23 -8.55 16 19 C 0.50 6.33 7.81 -10.99 -0.09 6.24 16 20 O -0.51 -9.34 15.34 5.55 0.09 -9.25 16 21 C 0.09 0.76 6.94 -5.20 -0.04 0.72 16 22 N -0.28 -3.28 3.20 -62.44 -0.20 -3.48 16 23 C -0.05 -0.49 10.89 -17.04 -0.19 -0.68 16 24 C 0.01 0.10 6.88 -82.77 -0.57 -0.47 16 25 C -0.07 -0.61 6.33 -91.77 -0.58 -1.19 16 26 C -0.17 -1.00 10.02 -26.73 -0.27 -1.27 16 27 C -0.17 -1.26 10.23 -26.73 -0.27 -1.53 16 28 N -0.26 -4.19 12.41 33.29 0.41 -3.78 16 29 N -0.05 -0.75 12.13 60.35 0.73 -0.02 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.45 7.37 -51.93 -0.38 0.07 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.33 5.97 -51.93 -0.31 1.02 16 34 H 0.03 0.37 6.58 -51.93 -0.34 0.03 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 38 H 0.27 8.16 6.69 -40.82 -0.27 7.88 16 39 H 0.08 2.17 6.32 -51.93 -0.33 1.84 16 40 H 0.02 0.44 7.86 -51.93 -0.41 0.04 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.06 1.19 6.33 -51.93 -0.33 0.86 16 43 H 0.40 3.31 6.66 -40.82 -0.27 3.04 16 44 H 0.13 0.45 8.07 -51.93 -0.42 0.03 16 45 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.19 0.96 7.45 -52.48 -0.39 0.57 16 47 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.09 0.48 7.22 -51.93 -0.38 0.10 16 49 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 401.47 15.07 6.05 6.05 Total: -1.00 -36.17 401.47 -8.03 -44.19 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -8.07 Total: 2.48 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -2.00 Total: -6.37 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: 1.01 Total: -56.87 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.09 Total: -9.25 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.10 Total: 19.76 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.17 -8.03 -44.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940795439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.317 kcal (2) G-P(sol) polarization free energy of solvation -36.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds