Wall clock time and date at job start Wed Apr 1 2020 05:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.52870 * 2 1 4 4 C 1.53195 * 109.49823 * 120.08890 * 2 1 3 5 5 N 1.46919 * 108.77583 * 174.58447 * 4 2 1 6 6 C 1.36934 * 120.62947 * 126.36814 * 5 4 2 7 7 H 1.08003 * 120.00181 * 332.09884 * 6 5 4 8 8 C 1.38817 * 120.00047 * 152.10323 * 6 5 4 9 9 N 1.31611 * 119.99905 * 335.48445 * 8 6 5 10 10 Si 1.86806 * 119.99955 * 155.48569 * 8 6 5 11 11 H 1.48500 * 109.46848 * 179.97438 * 10 8 6 12 12 H 1.48499 * 109.47139 * 299.99967 * 10 8 6 13 13 H 1.48498 * 109.46881 * 60.00174 * 10 8 6 14 14 C 1.46925 * 118.73874 * 306.63696 * 5 4 2 15 15 C 1.52760 * 109.00707 * 53.31506 * 14 5 4 16 16 C 1.53040 * 109.37969 * 305.58507 * 15 14 5 17 17 H 1.09004 * 109.46357 * 301.21676 * 16 15 14 18 18 N 1.46507 * 109.44863 * 181.25574 * 16 15 14 19 19 C 1.34776 * 119.99971 * 84.93495 * 18 16 15 20 20 O 1.21284 * 120.00206 * 0.02562 * 19 18 16 21 21 C 1.50699 * 120.00173 * 180.02562 * 19 18 16 22 22 N 1.46498 * 109.47529 * 180.02562 * 21 19 18 23 23 C 1.35317 * 125.86794 * 124.71182 * 22 21 19 24 24 C 1.35352 * 106.17282 * 179.90809 * 23 22 21 25 25 C 1.50700 * 126.75107 * 180.12819 * 24 23 22 26 26 C 1.53002 * 117.49863 * 343.91826 * 25 24 23 27 27 C 1.52999 * 117.49948 * 275.29682 * 25 24 23 28 28 N 1.33775 * 106.49737 * 0.35243 * 24 23 22 29 29 N 1.28636 * 108.88297 * 359.77859 * 28 24 23 30 30 H 1.08995 * 109.47127 * 299.91693 * 1 2 3 31 31 H 1.09004 * 109.47046 * 59.91105 * 1 2 3 32 32 H 1.09000 * 109.47518 * 179.91894 * 1 2 3 33 33 H 1.08994 * 109.47132 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46916 * 300.08584 * 3 2 1 35 35 H 1.09003 * 109.46855 * 60.08454 * 3 2 1 36 36 H 1.08996 * 109.58840 * 54.79062 * 4 2 1 37 37 H 1.09000 * 109.57963 * 294.36999 * 4 2 1 38 38 H 0.97001 * 120.00448 * 354.24241 * 9 8 6 39 39 H 1.09000 * 109.58451 * 173.14723 * 14 5 4 40 40 H 1.09001 * 109.58786 * 293.57282 * 14 5 4 41 41 H 1.09003 * 109.56471 * 185.55352 * 15 14 5 42 42 H 1.08996 * 109.38796 * 65.51486 * 15 14 5 43 43 H 0.96994 * 119.99912 * 264.94376 * 18 16 15 44 44 H 1.09007 * 109.47210 * 300.00887 * 21 19 18 45 45 H 1.08997 * 109.46787 * 60.00149 * 21 19 18 46 46 H 1.08003 * 126.91271 * 0.02562 * 23 22 21 47 47 H 1.09004 * 115.54808 * 129.62359 * 25 24 23 48 48 H 1.09000 * 117.49269 * 0.02562 * 26 25 24 49 49 H 1.08996 * 117.49580 * 145.01884 * 26 25 24 50 50 H 1.08994 * 117.49728 * 214.98276 * 27 25 24 51 51 H 1.09002 * 117.49808 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4419 0.0000 4 6 2.0413 -0.7240 1.2495 5 7 3.5045 -0.8293 1.1695 6 6 4.2935 -0.3788 2.1940 7 1 3.9481 0.4237 2.8289 8 6 5.5374 -0.9536 2.4165 9 7 5.7755 -2.1836 2.0133 10 14 6.8731 0.0188 3.2883 11 1 8.0974 -0.8139 3.4018 12 1 7.1791 1.2464 2.5108 13 1 6.4043 0.3965 4.6458 14 6 4.1054 -1.4218 -0.0333 15 6 3.5708 -0.6951 -1.2661 16 6 2.0408 -0.7231 -1.2484 17 1 1.6966 -1.7573 -1.2355 18 7 1.5267 -0.0527 -2.4453 19 6 1.3987 -0.7378 -3.5989 20 8 1.7086 -1.9094 -3.6460 21 6 0.8705 -0.0480 -4.8303 22 7 0.8267 -1.0003 -5.9427 23 6 -0.2626 -1.3002 -6.6873 24 6 0.1431 -2.2167 -7.5969 25 6 -0.7030 -2.8667 -8.6611 26 6 -2.2227 -2.7658 -8.5149 27 6 -1.5166 -4.0993 -8.2617 28 7 1.4418 -2.4357 -7.3623 29 7 1.8165 -1.6998 -6.3759 30 1 -0.3633 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 3.1314 1.4409 -0.0005 34 1 1.6773 1.9565 -0.8892 35 1 1.6798 1.9557 0.8908 36 1 1.6052 -1.7217 1.2979 37 1 1.7638 -0.1581 2.1388 38 1 5.0590 -2.7178 1.6364 39 1 5.1894 -1.3162 0.0099 40 1 3.8410 -2.4776 -0.0917 41 1 3.9333 -1.1897 -2.1672 42 1 3.9159 0.3387 -1.2547 43 1 1.2786 0.8842 -2.4076 44 1 -0.1339 0.3272 -4.6339 45 1 1.5250 0.7841 -5.0895 46 1 -1.2555 -0.8893 -6.5789 47 1 -0.2913 -2.8406 -9.6701 48 1 -2.6103 -2.2289 -7.6491 49 1 -2.8110 -2.6732 -9.4277 50 1 -1.6405 -4.8840 -9.0080 51 1 -1.4395 -4.4404 -7.2293 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940795439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:13 Heat of formation + Delta-G solvation = 87.780133 kcal Electronic energy + Delta-G solvation = -31250.788034 eV Core-core repulsion = 27188.040437 eV Total energy + Delta-G solvation = -4062.747597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.29999 -41.52152 -39.79949 -38.16975 -36.69426 -35.46826 -34.71373 -33.27122 -31.86149 -31.70601 -29.71609 -28.19028 -27.35542 -26.73007 -25.05246 -24.44219 -23.54282 -22.77644 -22.44450 -21.80634 -21.23687 -19.81339 -19.47516 -18.57827 -18.45612 -17.29449 -16.94872 -16.46750 -16.38001 -16.13659 -15.93710 -15.63243 -15.53455 -15.42261 -15.32206 -15.23368 -14.79005 -14.36687 -14.00409 -13.75912 -13.55944 -13.33127 -12.92215 -12.78497 -12.70026 -12.57572 -12.56842 -12.47096 -12.34134 -12.30342 -12.18443 -11.94952 -11.80291 -11.74112 -11.63242 -11.48315 -11.43575 -11.21654 -11.17890 -10.80319 -10.47758 -10.14240 -9.99753 -8.95526 -8.25632 -5.41596 0.56026 1.24815 1.41608 1.48280 1.56875 1.64735 1.82877 2.06292 2.64975 2.86563 3.20417 3.25535 3.43964 3.54303 3.59879 3.72846 3.83265 3.89234 3.95712 3.98837 4.00926 4.06175 4.21640 4.26162 4.31023 4.40318 4.47572 4.51145 4.69246 4.73264 4.77742 4.83932 4.84582 4.87958 4.94016 4.97256 5.04358 5.10483 5.11943 5.18533 5.19260 5.21783 5.26430 5.29601 5.35258 5.41167 5.54828 5.64007 5.83921 6.35389 6.42261 7.01884 7.12315 7.51454 7.75374 8.21193 8.99654 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020561 B = 0.002230 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.499059 B =12553.565260 C =13123.433740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.076 4.076 3 C -0.127 4.127 4 C 0.154 3.846 5 N -0.608 5.608 6 C -0.344 4.344 7 H 0.059 0.941 8 C -0.082 4.082 9 N -0.948 5.948 10 Si 1.114 2.886 11 H -0.298 1.298 12 H -0.277 1.277 13 H -0.273 1.273 14 C 0.163 3.837 15 C -0.130 4.130 16 C 0.181 3.819 17 H 0.049 0.951 18 N -0.695 5.695 19 C 0.494 3.506 20 O -0.572 6.572 21 C 0.097 3.903 22 N -0.279 5.279 23 C -0.029 4.029 24 C -0.012 4.012 25 C -0.092 4.092 26 C -0.137 4.137 27 C -0.179 4.179 28 N -0.313 5.313 29 N -0.107 5.107 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.002 0.998 37 H 0.062 0.938 38 H 0.250 0.750 39 H 0.044 0.956 40 H -0.013 1.013 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.420 0.580 44 H 0.196 0.804 45 H 0.161 0.839 46 H 0.241 0.759 47 H 0.121 0.879 48 H 0.111 0.889 49 H 0.124 0.876 50 H 0.111 0.889 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.723 11.871 -18.434 31.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.078 4.078 3 C -0.184 4.184 4 C 0.028 3.972 5 N -0.332 5.332 6 C -0.474 4.474 7 H 0.077 0.923 8 C -0.278 4.278 9 N -0.590 5.590 10 Si 0.939 3.061 11 H -0.225 1.225 12 H -0.203 1.203 13 H -0.198 1.198 14 C 0.036 3.964 15 C -0.170 4.170 16 C 0.076 3.924 17 H 0.067 0.933 18 N -0.349 5.349 19 C 0.280 3.720 20 O -0.449 6.449 21 C -0.027 4.027 22 N -0.073 5.073 23 C -0.180 4.180 24 C -0.150 4.150 25 C -0.112 4.112 26 C -0.175 4.175 27 C -0.217 4.217 28 N -0.179 5.179 29 N -0.085 5.085 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.020 0.980 37 H 0.080 0.920 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.005 0.995 41 H 0.060 0.940 42 H 0.093 0.907 43 H 0.260 0.740 44 H 0.213 0.787 45 H 0.178 0.822 46 H 0.257 0.743 47 H 0.139 0.861 48 H 0.130 0.870 49 H 0.143 0.857 50 H 0.129 0.871 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.395 10.730 -17.733 28.386 hybrid contribution -1.818 -0.379 -0.044 1.858 sum -21.212 10.351 -17.777 29.549 Atomic orbital electron populations 1.21764 0.91765 1.01690 1.03493 1.21174 0.96847 0.96719 0.93041 1.21741 1.00974 0.93402 1.02257 1.21126 0.83261 0.96240 0.96561 1.44262 1.01367 1.72205 1.15328 1.20197 1.01977 1.14351 1.10830 0.92278 1.27239 1.02769 0.96486 1.01311 1.70905 1.36431 1.07659 1.44048 0.82871 0.73475 0.74042 0.75736 1.22494 1.20287 1.19825 1.20555 0.97043 0.92686 0.86129 1.22197 0.96572 1.01331 0.96889 1.20509 0.91954 0.95724 0.84219 0.93251 1.45806 1.65280 1.15230 1.08586 1.21021 0.78377 0.87107 0.85543 1.90862 1.50545 1.18745 1.84778 1.22371 1.10369 0.89733 0.80207 1.47044 1.07416 1.28994 1.23818 1.23993 0.95742 1.02760 0.95465 1.21631 0.91602 1.00664 1.01089 1.20089 0.92304 1.02873 0.95912 1.23168 0.90809 0.98378 1.05105 1.23041 1.03825 0.92431 1.02398 1.75018 1.13867 1.18762 1.10289 1.78426 1.15350 1.05864 1.08869 0.91278 0.89718 0.93959 0.94032 0.90099 0.92341 0.98015 0.91993 0.93965 0.93708 0.99503 0.93977 0.90729 0.74039 0.78683 0.82162 0.74274 0.86125 0.87040 0.85741 0.87074 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 8.31 71.98 0.60 -1.98 16 2 C -0.08 -2.12 0.56 -52.10 -0.03 -2.15 16 3 C -0.13 -3.13 7.83 71.98 0.56 -2.57 16 4 C 0.15 6.10 5.20 86.36 0.45 6.55 16 5 N -0.61 -29.99 2.29 -699.94 -1.60 -31.59 16 6 C -0.34 -18.81 9.49 84.04 0.80 -18.02 16 7 H 0.06 3.16 7.94 -2.91 -0.02 3.13 16 8 C -0.08 -4.73 4.70 84.86 0.40 -4.33 16 9 N -0.95 -59.79 12.42 21.65 0.27 -59.52 16 10 Si 1.11 51.13 29.98 68.60 2.06 53.18 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 14 C 0.16 8.13 4.66 86.22 0.40 8.53 16 15 C -0.13 -5.07 5.29 30.53 0.16 -4.91 16 16 C 0.18 5.63 1.57 45.02 0.07 5.70 16 17 H 0.05 1.89 7.58 -2.39 -0.02 1.88 16 18 N -0.70 -13.96 4.29 -442.38 -1.90 -15.86 16 19 C 0.49 11.45 7.81 87.66 0.68 12.14 16 20 O -0.57 -21.39 15.34 -3.04 -0.05 -21.44 16 21 C 0.10 1.09 6.94 85.63 0.59 1.68 16 22 N -0.28 -5.87 3.20 -351.46 -1.12 -6.99 16 23 C -0.03 -0.46 10.89 83.49 0.91 0.45 16 24 C -0.01 -0.26 6.88 41.60 0.29 0.02 16 25 C -0.09 -1.47 6.33 -11.54 -0.07 -1.54 16 26 C -0.14 -1.12 10.02 30.59 0.31 -0.82 16 27 C -0.18 -2.54 10.23 30.59 0.31 -2.23 16 28 N -0.31 -10.26 12.41 -48.60 -0.60 -10.87 16 29 N -0.11 -3.47 12.13 37.02 0.45 -3.02 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.09 7.37 -2.39 -0.02 1.07 16 32 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.04 1.35 5.97 -2.39 -0.01 1.33 16 34 H 0.08 1.25 6.58 -2.39 -0.02 1.24 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 36 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.06 2.40 7.93 -2.39 -0.02 2.39 16 38 H 0.25 16.33 6.69 -92.71 -0.62 15.71 16 39 H 0.04 2.55 6.32 -2.39 -0.02 2.53 16 40 H -0.01 -0.71 7.86 -2.39 -0.02 -0.73 16 41 H 0.04 1.74 8.14 -2.39 -0.02 1.73 16 42 H 0.07 2.76 6.33 -2.39 -0.02 2.75 16 43 H 0.42 4.56 6.66 -92.71 -0.62 3.94 16 44 H 0.20 -0.26 8.07 -2.38 -0.02 -0.28 16 45 H 0.16 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.24 0.89 7.45 -2.91 -0.02 0.87 16 47 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.11 0.55 7.22 -2.39 -0.02 0.54 16 49 H 0.12 0.50 8.14 -2.39 -0.02 0.49 16 50 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 51 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -91.92 401.47 4.40 -87.51 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.47 Total: 12.06 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 6.43 Total: -3.47 kcal Atomic # 7 Polarization: -123.33 SS G_CDS: -4.51 Total: -127.84 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.05 Total: -21.44 kcal Atomic # 14 Polarization: 51.13 SS G_CDS: 2.06 Total: 53.18 kcal Total: -91.92 4.40 -87.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940795439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.292 kcal (2) G-P(sol) polarization free energy of solvation -91.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds