Wall clock time and date at job start Wed Apr 1 2020 05:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.52363 * 2 1 4 4 C 1.52755 * 109.56350 * 240.04655 * 2 1 3 5 5 N 1.46928 * 109.00916 * 185.55052 * 4 2 1 6 6 C 1.36940 * 120.63128 * 233.58321 * 5 4 2 7 7 H 1.07993 * 119.99788 * 30.70228 * 6 5 4 8 8 C 1.38809 * 119.99753 * 210.70284 * 6 5 4 9 9 N 1.31622 * 119.99809 * 198.62072 * 8 6 5 10 10 Si 1.86792 * 120.00254 * 18.61981 * 8 6 5 11 11 H 1.48500 * 109.47340 * 269.99830 * 10 8 6 12 12 H 1.48500 * 109.47389 * 30.00239 * 10 8 6 13 13 H 1.48506 * 109.47232 * 150.00017 * 10 8 6 14 14 C 1.46924 * 118.73677 * 53.31021 * 5 4 2 15 15 C 1.53188 * 108.77698 * 306.64486 * 14 5 4 16 16 C 1.53042 * 109.49714 * 120.08249 * 2 1 3 17 17 H 1.08997 * 109.45154 * 61.30093 * 16 2 1 18 18 N 1.46503 * 109.45808 * 301.33230 * 16 2 1 19 19 C 1.34778 * 119.99695 * 154.93285 * 18 16 2 20 20 O 1.21284 * 119.99786 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00177 * 180.02562 * 19 18 16 22 22 N 1.46497 * 109.47070 * 179.97438 * 21 19 18 23 23 C 1.35313 * 125.86244 * 124.71911 * 22 21 19 24 24 C 1.35355 * 106.17632 * 179.90454 * 23 22 21 25 25 C 1.50694 * 126.75646 * 180.12250 * 24 23 22 26 26 C 1.52999 * 117.49680 * 343.99859 * 25 24 23 27 27 C 1.52991 * 117.50176 * 275.33617 * 25 24 23 28 28 N 1.33779 * 106.49044 * 0.35208 * 24 23 22 29 29 N 1.28632 * 108.88855 * 359.77255 * 28 24 23 30 30 H 1.09002 * 109.47397 * 299.91522 * 1 2 3 31 31 H 1.08995 * 109.47083 * 59.91723 * 1 2 3 32 32 H 1.09003 * 109.46995 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47126 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47022 * 300.08230 * 3 2 1 35 35 H 1.09005 * 109.46845 * 60.07875 * 3 2 1 36 36 H 1.08998 * 109.51477 * 65.66930 * 4 2 1 37 37 H 1.09005 * 109.43612 * 305.39010 * 4 2 1 38 38 H 0.97006 * 120.00018 * 354.95467 * 9 8 6 39 39 H 1.09002 * 109.58769 * 66.42862 * 14 5 4 40 40 H 1.09004 * 109.58933 * 186.71384 * 14 5 4 41 41 H 1.08999 * 109.49987 * 174.58593 * 15 14 5 42 42 H 1.09002 * 109.49292 * 294.65004 * 15 14 5 43 43 H 0.96993 * 120.00312 * 334.93593 * 18 16 2 44 44 H 1.09000 * 109.46835 * 300.00553 * 21 19 18 45 45 H 1.09000 * 109.46720 * 60.00248 * 21 19 18 46 46 H 1.08003 * 126.91755 * 0.02562 * 23 22 21 47 47 H 1.09001 * 115.54686 * 129.66039 * 25 24 23 48 48 H 1.09001 * 117.50247 * 359.97438 * 26 25 24 49 49 H 1.09001 * 117.49944 * 145.01937 * 26 25 24 50 50 H 1.09000 * 117.50211 * 214.97768 * 27 25 24 51 51 H 1.09004 * 117.50110 * 359.97165 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0415 -0.7187 -1.2471 5 7 3.5046 -0.8291 -1.1696 6 6 4.2936 -0.3784 -2.1941 7 1 3.9699 0.4565 -2.7978 8 6 5.5092 -0.9949 -2.4567 9 7 6.4238 -0.3701 -3.1678 10 14 5.8472 -2.7109 -1.8009 11 1 6.4698 -2.6133 -0.4563 12 1 4.5708 -3.4634 -1.7020 13 1 6.7698 -3.4205 -2.7232 14 6 4.1053 -1.4266 0.0307 15 6 3.5709 -0.6950 1.2660 16 6 2.0408 -0.7231 1.2483 17 1 1.6967 -1.7573 1.2351 18 7 1.5266 -0.0529 2.4453 19 6 1.3972 -0.7386 3.5984 20 8 1.7070 -1.9103 3.6452 21 6 0.8677 -0.0494 4.8296 22 7 0.8227 -1.0023 5.9413 23 6 1.4122 -0.8405 7.1485 24 6 1.1161 -1.9502 7.8646 25 6 1.5409 -2.2509 9.2788 26 6 2.6811 -1.4168 9.8664 27 6 2.9207 -2.8793 9.4835 28 7 0.3762 -2.7299 7.0682 29 7 0.2204 -2.1398 5.9359 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1313 1.4411 -0.0005 34 1 1.6773 1.9566 -0.8892 35 1 1.6796 1.9558 0.8907 36 1 1.7646 -0.1497 -2.1346 37 1 1.6020 -1.7149 -1.2975 38 1 6.2222 0.4894 -3.5698 39 1 3.8375 -2.4818 0.0867 40 1 5.1898 -1.3268 -0.0150 41 1 3.9334 -1.1897 2.1670 42 1 3.9164 0.3387 1.2543 43 1 1.2792 0.8842 2.4079 44 1 1.5219 0.7827 5.0898 45 1 -0.1365 0.3258 4.6323 46 1 1.9992 0.0051 7.4756 47 1 0.7425 -2.5584 9.9542 48 1 3.1242 -0.6508 9.2299 49 1 2.6331 -1.1760 10.9284 50 1 3.0303 -3.6002 10.2938 51 1 3.5211 -3.0758 8.5952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940795440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:19 Heat of formation + Delta-G solvation = 115.504655 kcal Electronic energy + Delta-G solvation = -31340.968903 eV Core-core repulsion = 27279.423532 eV Total energy + Delta-G solvation = -4061.545371 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.47961 -40.37668 -38.56006 -37.57734 -34.98805 -34.62441 -33.39187 -31.89477 -30.93325 -30.51301 -28.78965 -27.10570 -26.37622 -24.85837 -24.35378 -23.07495 -22.47151 -21.85382 -21.15468 -20.89923 -20.31965 -18.76687 -17.83189 -17.65243 -17.21484 -16.44514 -16.03220 -15.69207 -15.44575 -14.96227 -14.73661 -14.61299 -14.41047 -14.21505 -14.02216 -13.75135 -13.63918 -13.06742 -12.89751 -12.66667 -12.46502 -12.23733 -11.91002 -11.81668 -11.74554 -11.48946 -11.48280 -11.41870 -11.31945 -11.05892 -10.98790 -10.60513 -10.59580 -10.50541 -10.45197 -10.09299 -10.00665 -9.78367 -9.70260 -9.24064 -9.20786 -8.92298 -8.54208 -7.08735 -6.26860 -3.39599 1.33740 1.90857 2.31406 2.33523 2.95863 3.40273 3.43098 3.54384 3.68977 3.89875 4.18240 4.31625 4.43154 4.48065 4.52484 4.55473 4.59862 4.82173 4.88173 4.88582 5.04522 5.12522 5.14103 5.26899 5.40528 5.47338 5.52744 5.58879 5.61177 5.71557 5.73392 5.77638 5.81656 5.90254 5.91841 5.95622 6.07791 6.12281 6.20534 6.23645 6.29510 6.32780 6.53467 6.56680 6.60578 6.62789 6.65831 6.88440 7.30938 7.98086 7.99127 8.37455 8.41081 9.01704 9.55587 10.16291 11.10876 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.002543 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.444434 B =11007.034103 C =12117.799593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.132 4.132 4 C 0.159 3.841 5 N -0.601 5.601 6 C -0.342 4.342 7 H 0.065 0.935 8 C -0.014 4.014 9 N -0.921 5.921 10 Si 1.064 2.936 11 H -0.294 1.294 12 H -0.284 1.284 13 H -0.300 1.300 14 C 0.127 3.873 15 C -0.144 4.144 16 C 0.165 3.835 17 H 0.085 0.915 18 N -0.714 5.714 19 C 0.497 3.503 20 O -0.508 6.508 21 C 0.095 3.905 22 N -0.280 5.280 23 C -0.049 4.049 24 C 0.009 3.991 25 C -0.071 4.071 26 C -0.170 4.170 27 C -0.165 4.165 28 N -0.265 5.265 29 N -0.049 5.049 30 H 0.048 0.952 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.064 0.936 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.398 0.602 44 H 0.134 0.866 45 H 0.128 0.872 46 H 0.189 0.811 47 H 0.121 0.879 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.101 0.899 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.006 6.040 22.431 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.092 4.092 3 C -0.189 4.189 4 C 0.032 3.968 5 N -0.325 5.325 6 C -0.471 4.471 7 H 0.083 0.917 8 C -0.215 4.215 9 N -0.561 5.561 10 Si 0.896 3.104 11 H -0.222 1.222 12 H -0.210 1.210 13 H -0.227 1.227 14 C 0.001 3.999 15 C -0.184 4.184 16 C 0.062 3.938 17 H 0.103 0.897 18 N -0.367 5.367 19 C 0.280 3.720 20 O -0.381 6.381 21 C -0.031 4.031 22 N -0.073 5.073 23 C -0.199 4.199 24 C -0.128 4.128 25 C -0.091 4.091 26 C -0.208 4.208 27 C -0.203 4.203 28 N -0.132 5.132 29 N -0.029 5.029 30 H 0.067 0.933 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.082 0.918 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.233 0.767 44 H 0.152 0.848 45 H 0.146 0.854 46 H 0.206 0.794 47 H 0.139 0.861 48 H 0.114 0.886 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.482 3.042 21.646 24.691 hybrid contribution -0.633 2.662 0.356 2.759 sum -12.115 5.704 22.002 25.757 Atomic orbital electron populations 1.21807 0.94849 1.01679 1.01137 1.21290 0.94674 0.96879 0.96340 1.21803 1.03160 0.94169 0.99749 1.20880 0.85270 0.96679 0.93927 1.44327 1.00209 1.72041 1.15905 1.20176 1.03229 1.12585 1.11093 0.91732 1.26221 0.92980 1.03812 0.98530 1.70915 1.32295 1.17227 1.35645 0.83771 0.75366 0.76463 0.74799 1.22213 1.21003 1.22741 1.21353 0.98261 0.94814 0.85461 1.22460 0.94267 1.02129 0.99535 1.21026 0.94054 0.96849 0.81894 0.89673 1.46177 1.66018 1.14423 1.10075 1.20151 0.79666 0.87751 0.84472 1.90856 1.48010 1.15330 1.83920 1.21923 1.06187 0.90441 0.84549 1.46711 1.34652 1.14922 1.11033 1.23228 1.06328 1.03768 0.86585 1.20987 1.02249 0.92576 0.97005 1.19984 0.92739 1.06042 0.90372 1.23028 1.01368 0.94749 1.01659 1.23026 0.97765 0.95867 1.03595 1.75091 1.16368 1.24396 0.97340 1.78467 1.15645 0.92648 1.16113 0.93342 0.92467 0.92755 0.90586 0.92890 0.94642 0.91754 0.95886 0.92728 0.95429 0.90566 0.92505 0.91285 0.76693 0.84818 0.85392 0.79444 0.86075 0.88621 0.87950 0.88034 0.88537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.31 37.16 0.31 -1.30 16 2 C -0.09 -1.29 0.56 -154.61 -0.09 -1.38 16 3 C -0.13 -1.81 7.82 37.16 0.29 -1.52 16 4 C 0.16 2.99 5.15 -3.93 -0.02 2.97 16 5 N -0.60 -13.66 2.17 -172.59 -0.37 -14.04 16 6 C -0.34 -9.19 9.88 -15.06 -0.15 -9.34 16 7 H 0.06 1.85 8.06 -52.49 -0.42 1.43 16 8 C -0.01 -0.39 5.24 -17.43 -0.09 -0.48 16 9 N -0.92 -28.08 13.70 55.49 0.76 -27.32 16 10 Si 1.06 26.54 24.73 -169.99 -4.20 22.34 16 11 H -0.29 -6.96 6.56 56.52 0.37 -6.59 16 12 H -0.28 -6.85 6.80 56.52 0.38 -6.47 16 13 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 14 C 0.13 2.73 4.21 -3.71 -0.02 2.72 16 15 C -0.14 -2.50 5.31 -26.61 -0.14 -2.64 16 16 C 0.17 2.46 1.57 -67.88 -0.11 2.36 16 17 H 0.09 1.49 7.58 -51.93 -0.39 1.09 16 18 N -0.71 -7.81 4.29 -53.76 -0.23 -8.04 16 19 C 0.50 5.98 7.81 -10.98 -0.09 5.90 16 20 O -0.51 -8.91 15.34 5.55 0.09 -8.82 16 21 C 0.09 0.71 6.94 -5.19 -0.04 0.67 16 22 N -0.28 -3.15 3.20 -62.44 -0.20 -3.35 16 23 C -0.05 -0.47 10.89 -17.04 -0.19 -0.65 16 24 C 0.01 0.10 6.88 -82.77 -0.57 -0.47 16 25 C -0.07 -0.60 6.33 -91.78 -0.58 -1.18 16 26 C -0.17 -1.01 10.03 -26.69 -0.27 -1.27 16 27 C -0.16 -1.26 10.24 -26.70 -0.27 -1.53 16 28 N -0.27 -4.04 12.41 33.29 0.41 -3.63 16 29 N -0.05 -0.75 12.13 60.35 0.73 -0.02 16 30 H 0.05 0.47 7.36 -51.93 -0.38 0.09 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.29 5.97 -51.93 -0.31 0.98 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.03 0.36 6.58 -51.93 -0.34 0.02 16 36 H 0.06 1.23 7.93 -51.93 -0.41 0.81 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.90 8.73 -40.82 -0.36 7.55 16 39 H 0.03 0.61 7.10 -51.93 -0.37 0.24 16 40 H 0.08 1.79 4.76 -51.93 -0.25 1.54 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.07 1.18 6.34 -51.93 -0.33 0.85 16 43 H 0.40 3.08 6.66 -40.82 -0.27 2.80 16 44 H 0.13 0.44 8.07 -51.93 -0.42 0.02 16 45 H 0.13 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.19 0.97 7.44 -52.48 -0.39 0.58 16 47 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.10 0.50 7.22 -51.93 -0.38 0.12 16 49 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 396.81 15.07 5.98 5.98 Total: -1.00 -36.37 396.81 -7.14 -43.50 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.09 Total: 0.55 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -2.01 Total: -7.15 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 1.10 Total: -56.39 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 26.54 SS G_CDS: -4.20 Total: 22.34 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.37 -7.14 -43.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940795440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.008 kcal (2) G-P(sol) polarization free energy of solvation -36.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds