Wall clock time and date at job start Wed Apr 1 2020 05:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.52363 * 2 1 4 4 C 1.52755 * 109.56350 * 240.04655 * 2 1 3 5 5 N 1.46928 * 109.00916 * 185.55052 * 4 2 1 6 6 C 1.36940 * 120.63128 * 233.58321 * 5 4 2 7 7 H 1.07993 * 119.99788 * 30.70228 * 6 5 4 8 8 C 1.38809 * 119.99753 * 210.70284 * 6 5 4 9 9 N 1.31622 * 119.99809 * 198.62072 * 8 6 5 10 10 Si 1.86792 * 120.00254 * 18.61981 * 8 6 5 11 11 H 1.48500 * 109.47340 * 269.99830 * 10 8 6 12 12 H 1.48500 * 109.47389 * 30.00239 * 10 8 6 13 13 H 1.48506 * 109.47232 * 150.00017 * 10 8 6 14 14 C 1.46924 * 118.73677 * 53.31021 * 5 4 2 15 15 C 1.53188 * 108.77698 * 306.64486 * 14 5 4 16 16 C 1.53042 * 109.49714 * 120.08249 * 2 1 3 17 17 H 1.08997 * 109.45154 * 61.30093 * 16 2 1 18 18 N 1.46503 * 109.45808 * 301.33230 * 16 2 1 19 19 C 1.34778 * 119.99695 * 154.93285 * 18 16 2 20 20 O 1.21284 * 119.99786 * 0.02562 * 19 18 16 21 21 C 1.50701 * 120.00177 * 180.02562 * 19 18 16 22 22 N 1.46497 * 109.47070 * 179.97438 * 21 19 18 23 23 C 1.35313 * 125.86244 * 124.71911 * 22 21 19 24 24 C 1.35355 * 106.17632 * 179.90454 * 23 22 21 25 25 C 1.50694 * 126.75646 * 180.12250 * 24 23 22 26 26 C 1.52999 * 117.49680 * 343.99859 * 25 24 23 27 27 C 1.52991 * 117.50176 * 275.33617 * 25 24 23 28 28 N 1.33779 * 106.49044 * 0.35208 * 24 23 22 29 29 N 1.28632 * 108.88855 * 359.77255 * 28 24 23 30 30 H 1.09002 * 109.47397 * 299.91522 * 1 2 3 31 31 H 1.08995 * 109.47083 * 59.91723 * 1 2 3 32 32 H 1.09003 * 109.46995 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47126 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47022 * 300.08230 * 3 2 1 35 35 H 1.09005 * 109.46845 * 60.07875 * 3 2 1 36 36 H 1.08998 * 109.51477 * 65.66930 * 4 2 1 37 37 H 1.09005 * 109.43612 * 305.39010 * 4 2 1 38 38 H 0.97006 * 120.00018 * 354.95467 * 9 8 6 39 39 H 1.09002 * 109.58769 * 66.42862 * 14 5 4 40 40 H 1.09004 * 109.58933 * 186.71384 * 14 5 4 41 41 H 1.08999 * 109.49987 * 174.58593 * 15 14 5 42 42 H 1.09002 * 109.49292 * 294.65004 * 15 14 5 43 43 H 0.96993 * 120.00312 * 334.93593 * 18 16 2 44 44 H 1.09000 * 109.46835 * 300.00553 * 21 19 18 45 45 H 1.09000 * 109.46720 * 60.00248 * 21 19 18 46 46 H 1.08003 * 126.91755 * 0.02562 * 23 22 21 47 47 H 1.09001 * 115.54686 * 129.66039 * 25 24 23 48 48 H 1.09001 * 117.50247 * 359.97438 * 26 25 24 49 49 H 1.09001 * 117.49944 * 145.01937 * 26 25 24 50 50 H 1.09000 * 117.50211 * 214.97768 * 27 25 24 51 51 H 1.09004 * 117.50110 * 359.97165 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0415 -0.7187 -1.2471 5 7 3.5046 -0.8291 -1.1696 6 6 4.2936 -0.3784 -2.1941 7 1 3.9699 0.4565 -2.7978 8 6 5.5092 -0.9949 -2.4567 9 7 6.4238 -0.3701 -3.1678 10 14 5.8472 -2.7109 -1.8009 11 1 6.4698 -2.6133 -0.4563 12 1 4.5708 -3.4634 -1.7020 13 1 6.7698 -3.4205 -2.7232 14 6 4.1053 -1.4266 0.0307 15 6 3.5709 -0.6950 1.2660 16 6 2.0408 -0.7231 1.2483 17 1 1.6967 -1.7573 1.2351 18 7 1.5266 -0.0529 2.4453 19 6 1.3972 -0.7386 3.5984 20 8 1.7070 -1.9103 3.6452 21 6 0.8677 -0.0494 4.8296 22 7 0.8227 -1.0023 5.9413 23 6 1.4122 -0.8405 7.1485 24 6 1.1161 -1.9502 7.8646 25 6 1.5409 -2.2509 9.2788 26 6 2.6811 -1.4168 9.8664 27 6 2.9207 -2.8793 9.4835 28 7 0.3762 -2.7299 7.0682 29 7 0.2204 -2.1398 5.9359 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3633 -1.0277 -0.0005 33 1 3.1313 1.4411 -0.0005 34 1 1.6773 1.9566 -0.8892 35 1 1.6796 1.9558 0.8907 36 1 1.7646 -0.1497 -2.1346 37 1 1.6020 -1.7149 -1.2975 38 1 6.2222 0.4894 -3.5698 39 1 3.8375 -2.4818 0.0867 40 1 5.1898 -1.3268 -0.0150 41 1 3.9334 -1.1897 2.1670 42 1 3.9164 0.3387 1.2543 43 1 1.2792 0.8842 2.4079 44 1 1.5219 0.7827 5.0898 45 1 -0.1365 0.3258 4.6323 46 1 1.9992 0.0051 7.4756 47 1 0.7425 -2.5584 9.9542 48 1 3.1242 -0.6508 9.2299 49 1 2.6331 -1.1760 10.9284 50 1 3.0303 -3.6002 10.2938 51 1 3.5211 -3.0758 8.5952 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940795440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:18 Heat of formation + Delta-G solvation = 89.227146 kcal Electronic energy + Delta-G solvation = -31342.108381 eV Core-core repulsion = 27279.423532 eV Total energy + Delta-G solvation = -4062.684849 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.28377 -41.51685 -39.80230 -38.15750 -36.56628 -35.44641 -34.66338 -33.75944 -32.04319 -31.69372 -29.69698 -28.19756 -27.82513 -26.43350 -25.04294 -24.11376 -23.47952 -22.88174 -22.70432 -21.78695 -21.20074 -19.93384 -19.48039 -18.56787 -18.42067 -17.29995 -17.21659 -16.47010 -16.36670 -16.19944 -16.05091 -15.64178 -15.57124 -15.49482 -15.39369 -15.21361 -14.76182 -14.35220 -14.02641 -13.94512 -13.66289 -13.35669 -13.26840 -12.92050 -12.76361 -12.70079 -12.56784 -12.49710 -12.30455 -12.17651 -12.04704 -11.86725 -11.72929 -11.69902 -11.55837 -11.42969 -11.34958 -11.21465 -11.19546 -10.81955 -10.62297 -10.10305 -9.98405 -9.11211 -8.45940 -5.56937 0.56985 1.26265 1.37318 1.44349 1.49182 1.49784 1.67060 2.07854 2.47268 2.87214 3.07592 3.26237 3.33568 3.51356 3.60515 3.73995 3.82869 3.90777 3.95677 3.99869 4.02839 4.06707 4.19662 4.26957 4.29331 4.41223 4.43494 4.48317 4.68016 4.71938 4.78280 4.81892 4.84930 4.87188 4.88612 4.95745 4.97942 5.04964 5.11767 5.17478 5.19499 5.22790 5.22964 5.29918 5.35768 5.41861 5.55808 5.61880 5.79851 6.27118 6.44092 6.89276 7.13658 7.52292 7.53931 8.07363 8.87122 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.002543 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.444434 B =11007.034103 C =12117.799593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.078 4.078 3 C -0.127 4.127 4 C 0.152 3.848 5 N -0.613 5.613 6 C -0.316 4.316 7 H 0.040 0.960 8 C -0.066 4.066 9 N -0.959 5.959 10 Si 1.099 2.901 11 H -0.277 1.277 12 H -0.275 1.275 13 H -0.307 1.307 14 C 0.122 3.878 15 C -0.132 4.132 16 C 0.177 3.823 17 H 0.059 0.941 18 N -0.696 5.696 19 C 0.496 3.504 20 O -0.568 6.568 21 C 0.095 3.905 22 N -0.279 5.279 23 C -0.032 4.032 24 C -0.011 4.011 25 C -0.090 4.090 26 C -0.141 4.141 27 C -0.179 4.179 28 N -0.312 5.312 29 N -0.101 5.101 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.041 0.959 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.251 0.749 39 H 0.022 0.978 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.419 0.581 44 H 0.189 0.811 45 H 0.165 0.835 46 H 0.237 0.763 47 H 0.122 0.878 48 H 0.109 0.891 49 H 0.124 0.876 50 H 0.111 0.889 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.568 8.688 25.651 30.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.080 4.080 3 C -0.184 4.184 4 C 0.026 3.974 5 N -0.337 5.337 6 C -0.447 4.447 7 H 0.058 0.942 8 C -0.262 4.262 9 N -0.602 5.602 10 Si 0.927 3.073 11 H -0.204 1.204 12 H -0.201 1.201 13 H -0.235 1.235 14 C -0.003 4.003 15 C -0.172 4.172 16 C 0.072 3.928 17 H 0.077 0.923 18 N -0.350 5.350 19 C 0.282 3.718 20 O -0.446 6.446 21 C -0.028 4.028 22 N -0.073 5.073 23 C -0.182 4.182 24 C -0.149 4.149 25 C -0.109 4.109 26 C -0.178 4.178 27 C -0.217 4.217 28 N -0.178 5.178 29 N -0.080 5.080 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.060 0.940 39 H 0.040 0.960 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.258 0.742 44 H 0.206 0.794 45 H 0.182 0.818 46 H 0.253 0.747 47 H 0.140 0.860 48 H 0.128 0.872 49 H 0.142 0.858 50 H 0.130 0.870 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.117 5.729 24.885 28.708 hybrid contribution -0.201 1.889 -0.643 2.005 sum -13.318 7.618 24.242 28.690 Atomic orbital electron populations 1.21766 0.92002 1.01903 1.03179 1.21104 0.96719 0.96595 0.93595 1.21743 1.00872 0.93797 1.01962 1.21081 0.82810 0.97132 0.96351 1.44378 1.01730 1.72085 1.15526 1.20066 1.03071 1.10727 1.10789 0.94236 1.27138 0.93653 1.06144 0.99219 1.71001 1.33518 1.17380 1.38272 0.83284 0.75566 0.73432 0.75025 1.20423 1.20088 1.23533 1.21319 0.97150 0.95020 0.86837 1.22267 0.96219 1.01625 0.97048 1.20570 0.92220 0.96173 0.83866 0.92261 1.45815 1.65334 1.15205 1.08666 1.20940 0.78242 0.87062 0.85601 1.90855 1.50569 1.18252 1.84926 1.22368 1.09275 0.89930 0.81254 1.47025 1.33640 1.14322 1.12264 1.23961 1.04787 1.04069 0.85407 1.21589 1.02148 0.93025 0.98127 1.20083 0.93287 1.08239 0.89339 1.23174 0.98129 0.93505 1.02969 1.23049 0.97151 0.98099 1.03352 1.75006 1.18263 1.26221 0.98294 1.78379 1.18193 0.94776 1.16636 0.90132 0.91624 0.93517 0.94037 0.93104 0.90089 0.92443 0.96159 0.93999 0.96015 0.92808 0.92588 0.90641 0.74158 0.79361 0.81774 0.74682 0.85999 0.87248 0.85792 0.87037 0.90519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.31 71.98 0.60 -2.01 16 2 C -0.08 -2.08 0.56 -52.25 -0.03 -2.11 16 3 C -0.13 -3.11 7.82 71.98 0.56 -2.55 16 4 C 0.15 5.66 5.15 86.22 0.44 6.10 16 5 N -0.61 -28.12 2.17 -699.94 -1.52 -29.64 16 6 C -0.32 -17.48 9.88 84.03 0.83 -16.65 16 7 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 8 C -0.07 -3.87 5.24 84.86 0.44 -3.43 16 9 N -0.96 -60.51 13.70 21.65 0.30 -60.22 16 10 Si 1.10 55.05 24.73 68.60 1.70 56.75 16 11 H -0.28 -13.00 6.56 99.48 0.65 -12.35 16 12 H -0.28 -13.20 6.80 99.48 0.68 -12.53 16 13 H -0.31 -15.64 7.11 99.48 0.71 -14.94 16 14 C 0.12 5.28 4.21 86.36 0.36 5.64 16 15 C -0.13 -4.43 5.31 30.67 0.16 -4.26 16 16 C 0.18 4.93 1.57 45.02 0.07 5.00 16 17 H 0.06 2.02 7.58 -2.39 -0.02 2.01 16 18 N -0.70 -12.46 4.29 -442.39 -1.90 -14.35 16 19 C 0.50 10.33 7.81 87.66 0.68 11.02 16 20 O -0.57 -19.44 15.34 -3.04 -0.05 -19.49 16 21 C 0.10 0.93 6.94 85.63 0.59 1.53 16 22 N -0.28 -5.45 3.20 -351.47 -1.12 -6.57 16 23 C -0.03 -0.49 10.89 83.49 0.91 0.42 16 24 C -0.01 -0.23 6.88 41.59 0.29 0.05 16 25 C -0.09 -1.38 6.33 -11.54 -0.07 -1.45 16 26 C -0.14 -1.18 10.03 30.62 0.31 -0.87 16 27 C -0.18 -2.51 10.24 30.62 0.31 -2.20 16 28 N -0.31 -9.61 12.41 -48.60 -0.60 -10.21 16 29 N -0.10 -3.04 12.13 37.02 0.45 -2.59 16 30 H 0.08 1.12 7.36 -2.39 -0.02 1.10 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.04 1.33 5.97 -2.39 -0.01 1.31 16 34 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 1.24 6.58 -2.38 -0.02 1.22 16 36 H 0.06 2.19 7.93 -2.39 -0.02 2.17 16 37 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.25 15.79 8.73 -92.70 -0.81 14.98 16 39 H 0.02 0.97 7.10 -2.39 -0.02 0.95 16 40 H 0.05 2.55 4.76 -2.39 -0.01 2.54 16 41 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.08 2.45 6.34 -2.39 -0.02 2.44 16 43 H 0.42 3.97 6.66 -92.71 -0.62 3.35 16 44 H 0.19 -0.20 8.07 -2.39 -0.02 -0.22 16 45 H 0.16 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.24 0.99 7.44 -2.91 -0.02 0.97 16 47 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.11 0.62 7.22 -2.39 -0.02 0.60 16 49 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 50 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -88.61 396.81 3.93 -84.67 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.21 Total: 7.42 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: 6.47 Total: -5.77 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -4.39 Total: -123.58 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.05 Total: -19.49 kcal Atomic # 14 Polarization: 55.05 SS G_CDS: 1.70 Total: 56.75 kcal Total: -88.61 3.93 -84.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940795440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.902 kcal (2) G-P(sol) polarization free energy of solvation -88.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds