Wall clock time and date at job start Wed Apr 1 2020 05:00:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53001 * 109.52642 * 2 1
4 4 C 1.53193 * 109.49498 * 239.92159 * 2 1 3
5 5 N 1.46922 * 108.77693 * 294.68238 * 4 2 1
6 6 C 1.36943 * 120.62973 * 126.36951 * 5 4 2
7 7 H 1.07994 * 119.99798 * 331.86716 * 6 5 4
8 8 C 1.38816 * 119.99514 * 151.86697 * 6 5 4
9 9 N 1.31613 * 120.00105 * 343.06701 * 8 6 5
10 10 Si 1.86806 * 119.99512 * 163.06557 * 8 6 5
11 11 H 1.48501 * 109.46862 * 60.00258 * 10 8 6
12 12 H 1.48496 * 109.46798 * 180.02562 * 10 8 6
13 13 H 1.48498 * 109.47163 * 300.00139 * 10 8 6
14 14 C 1.46926 * 118.74018 * 306.39357 * 5 4 2
15 15 C 1.53197 * 108.77361 * 53.60855 * 14 5 4
16 16 C 1.53039 * 109.49749 * 120.08259 * 2 1 3
17 17 H 1.08996 * 109.44740 * 178.59602 * 16 2 1
18 18 N 1.46500 * 109.46140 * 298.56531 * 16 2 1
19 19 C 1.34773 * 119.99759 * 205.06842 * 18 16 2
20 20 O 1.21278 * 120.00545 * 359.97438 * 19 18 16
21 21 C 1.50706 * 119.99608 * 180.02562 * 19 18 16
22 22 H 1.08997 * 109.68960 * 300.53936 * 21 19 18
23 23 C 1.53435 * 109.68972 * 179.97438 * 21 19 18
24 24 C 1.53111 * 109.55532 * 190.56156 * 23 21 19
25 25 C 1.53422 * 109.57920 * 70.05407 * 24 23 21
26 26 C 1.50596 * 108.36590 * 310.15730 * 25 24 23
27 27 N 1.32839 * 129.22502 * 196.53078 * 26 25 24
28 28 N 1.29022 * 108.66306 * 179.90096 * 27 26 25
29 29 N 1.29110 * 110.25802 * 0.03127 * 28 27 26
30 30 H 0.96998 * 126.00929 * 180.02562 * 29 28 27
31 31 C 1.34399 * 107.98383 * 0.07109 * 29 28 27
32 32 H 1.08999 * 109.46721 * 299.91893 * 1 2 3
33 33 H 1.09002 * 109.47088 * 59.91633 * 1 2 3
34 34 H 1.08997 * 109.47195 * 179.91606 * 1 2 3
35 35 H 1.08996 * 109.47089 * 180.02562 * 3 2 1
36 36 H 1.08999 * 109.47025 * 300.08444 * 3 2 1
37 37 H 1.09004 * 109.46826 * 60.08089 * 3 2 1
38 38 H 1.08999 * 109.58694 * 174.89455 * 4 2 1
39 39 H 1.09001 * 109.70406 * 54.54243 * 4 2 1
40 40 H 0.97003 * 119.99417 * 179.97438 * 9 8 6
41 41 H 1.09003 * 109.58960 * 293.82022 * 14 5 4
42 42 H 1.08995 * 109.70321 * 173.46477 * 14 5 4
43 43 H 1.09001 * 109.49295 * 185.41622 * 15 14 5
44 44 H 1.08997 * 109.49624 * 65.31824 * 15 14 5
45 45 H 0.96996 * 119.99699 * 25.07123 * 18 16 2
46 46 H 1.09007 * 109.45987 * 70.54012 * 23 21 19
47 47 H 1.09001 * 109.45033 * 310.58129 * 23 21 19
48 48 H 1.08998 * 109.45236 * 310.02256 * 24 23 21
49 49 H 1.08993 * 109.43535 * 190.07666 * 24 23 21
50 50 H 1.09003 * 109.68899 * 69.88629 * 25 24 23
51 51 H 1.08997 * 109.69163 * 190.42673 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0414 1.4420 0.0000
4 6 2.0413 -0.7238 -1.2496
5 7 1.6515 -2.1381 -1.1697
6 6 0.9630 -2.7311 -2.1943
7 1 0.3191 -2.1379 -2.8266
8 6 1.0929 -4.0946 -2.4199
9 7 2.1010 -4.7559 -1.8921
10 14 -0.1634 -4.9907 -3.4728
11 1 -0.1776 -4.4012 -4.8357
12 1 0.1982 -6.4284 -3.5585
13 1 -1.5094 -4.8549 -2.8606
14 6 2.0140 -2.9040 0.0306
15 6 1.5029 -2.1558 1.2659
16 6 2.0408 -0.7231 1.2483
17 1 3.1305 -0.7445 1.2350
18 7 1.5811 -0.0145 2.4453
19 6 2.2706 -0.1218 3.5983
20 8 3.2713 -0.8053 3.6452
21 6 1.7973 0.6067 4.8298
22 1 1.7679 1.6785 4.6338
23 6 2.7499 0.3201 5.9980
24 6 2.1336 0.8378 7.3006
25 6 0.9311 -0.0349 7.6828
26 6 0.0372 -0.1651 6.4778
27 7 -1.2288 -0.5616 6.4099
28 7 -1.6085 -0.5215 5.1774
29 7 -0.6418 -0.1139 4.4249
30 1 -0.6779 0.0010 3.4624
31 6 0.4236 0.1221 5.2094
32 1 -0.3633 0.5126 0.8907
33 1 -0.3633 0.5151 -0.8892
34 1 -0.3633 -1.0276 -0.0015
35 1 3.1314 1.4410 -0.0005
36 1 1.6773 1.9566 -0.8892
37 1 1.6797 1.9557 0.8908
38 1 3.1274 -0.6462 -1.2981
39 1 1.6027 -0.2736 -2.1403
40 1 2.1914 -5.7088 -2.0496
41 1 3.0979 -3.0043 0.0866
42 1 1.5573 -3.8927 -0.0126
43 1 1.8481 -2.6629 2.1669
44 1 0.4132 -2.1355 1.2539
45 1 0.7805 0.5319 2.4079
46 1 3.7015 0.8219 5.8221
47 1 2.9151 -0.7544 6.0765
48 1 1.8053 1.8679 7.1625
49 1 2.8785 0.7976 8.0952
50 1 1.2766 -1.0213 7.9921
51 1 0.3814 0.4343 8.4988
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000940985859.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:00:10
Heat of formation + Delta-G solvation = 66.514339 kcal
Electronic energy + Delta-G solvation = -32716.730612 eV
Core-core repulsion = 28653.060862 eV
Total energy + Delta-G solvation = -4063.669751 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.37 seconds
Orbital eigenvalues (eV)
-43.76736 -40.39736 -38.63296 -36.91434 -34.87134 -34.19908 -33.19115 -31.53432
-30.94584 -30.37934 -29.79605 -27.09927 -26.05403 -25.63874 -24.53088 -23.40256
-22.96441 -22.20344 -20.91762 -20.71708 -19.86458 -18.72679 -18.13400 -17.26066
-16.75490 -16.46116 -15.93054 -15.68101 -14.82521 -14.78890 -14.40822 -14.23827
-14.20785 -13.98122 -13.95217 -13.68590 -13.58578 -13.12017 -12.89082 -12.54074
-12.37611 -11.93282 -11.87524 -11.67209 -11.65631 -11.57072 -11.45381 -11.36866
-11.12628 -10.97949 -10.94625 -10.78536 -10.68363 -10.62054 -10.54211 -10.26138
-10.10972 -10.03735 -9.82445 -9.57611 -9.11450 -8.91523 -8.49252 -6.74957
-5.84799 -3.28269 1.22674 2.21889 2.31720 2.55298 3.01695 3.34422
3.41282 3.41351 3.93207 4.07337 4.31696 4.43318 4.43564 4.55670
4.83128 4.88520 4.95343 4.96220 5.09219 5.10635 5.17072 5.26839
5.35150 5.46161 5.54282 5.60336 5.63524 5.69882 5.72047 5.73269
5.78324 5.94427 5.95488 5.99362 6.00474 6.12603 6.12749 6.25981
6.33119 6.40037 6.49311 6.54293 6.65611 6.68734 6.77415 6.84643
7.26075 7.36091 7.59545 7.73450 8.06108 8.19660 8.37956 9.14107
9.77237 10.33387 11.23617
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.015385 B = 0.003091 C = 0.002936
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1819.576100 B = 9056.206113 C = 9533.177959
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.132 4.132
2 C -0.090 4.090
3 C -0.137 4.137
4 C 0.160 3.840
5 N -0.587 5.587
6 C -0.257 4.257
7 H 0.065 0.935
8 C 0.005 3.995
9 N -0.900 5.900
10 Si 0.901 3.099
11 H -0.283 1.283
12 H -0.290 1.290
13 H -0.284 1.284
14 C 0.175 3.825
15 C -0.150 4.150
16 C 0.162 3.838
17 H 0.086 0.914
18 N -0.726 5.726
19 C 0.512 3.488
20 O -0.517 6.517
21 C -0.033 4.033
22 H 0.116 0.884
23 C -0.098 4.098
24 C -0.119 4.119
25 C -0.036 4.036
26 C -0.005 4.005
27 N -0.258 5.258
28 N -0.078 5.078
29 N -0.378 5.378
30 H 0.445 0.555
31 C -0.012 4.012
32 H 0.026 0.974
33 H 0.054 0.946
34 H 0.078 0.922
35 H 0.053 0.947
36 H 0.056 0.944
37 H 0.044 0.956
38 H 0.020 0.980
39 H 0.059 0.941
40 H 0.255 0.745
41 H 0.021 0.979
42 H 0.090 0.910
43 H 0.052 0.948
44 H 0.058 0.942
45 H 0.384 0.616
46 H 0.085 0.915
47 H 0.083 0.917
48 H 0.069 0.931
49 H 0.082 0.918
50 H 0.086 0.914
51 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.343 15.614 15.458 21.974
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.093 4.093
3 C -0.195 4.195
4 C 0.033 3.967
5 N -0.309 5.309
6 C -0.386 4.386
7 H 0.083 0.917
8 C -0.194 4.194
9 N -0.544 5.544
10 Si 0.731 3.269
11 H -0.209 1.209
12 H -0.216 1.216
13 H -0.210 1.210
14 C 0.048 3.952
15 C -0.191 4.191
16 C 0.059 3.941
17 H 0.104 0.896
18 N -0.378 5.378
19 C 0.296 3.704
20 O -0.392 6.392
21 C -0.057 4.057
22 H 0.134 0.866
23 C -0.136 4.136
24 C -0.157 4.157
25 C -0.075 4.075
26 C -0.145 4.145
27 N -0.124 5.124
28 N -0.057 5.057
29 N -0.098 5.098
30 H 0.291 0.709
31 C -0.148 4.148
32 H 0.045 0.955
33 H 0.073 0.927
34 H 0.096 0.904
35 H 0.073 0.927
36 H 0.075 0.925
37 H 0.063 0.937
38 H 0.038 0.962
39 H 0.077 0.923
40 H 0.065 0.935
41 H 0.039 0.961
42 H 0.108 0.892
43 H 0.070 0.930
44 H 0.076 0.924
45 H 0.218 0.782
46 H 0.103 0.897
47 H 0.102 0.898
48 H 0.088 0.912
49 H 0.101 0.899
50 H 0.105 0.895
51 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -1.070 14.393 15.606 21.256
hybrid contribution -0.112 0.169 -1.441 1.455
sum -1.183 14.562 14.165 20.349
Atomic orbital electron populations
1.21814 0.94585 1.03152 0.99385 1.21389 0.96284 0.94717 0.96881
1.21810 1.01038 0.95716 1.00904 1.20895 0.96272 0.86262 0.93305
1.44026 1.65020 1.05349 1.16521 1.19091 1.18901 0.91697 1.08906
0.91688 1.25052 0.97041 0.98167 0.99114 1.70015 1.28140 1.08474
1.47725 0.86393 0.81387 0.78837 0.80273 1.20872 1.21619 1.21027
1.20735 0.96952 0.95592 0.81876 1.22649 1.00685 0.94699 1.01018
1.21111 0.99637 0.91694 0.81615 0.89619 1.46531 1.29172 1.50884
1.11227 1.20322 0.84190 0.81834 0.84051 1.90750 1.25057 1.39077
1.84300 1.20093 0.88905 1.01068 0.95586 0.86586 1.21480 0.97094
1.03893 0.91164 1.21676 0.97029 0.99451 0.97526 1.20031 0.93260
1.01559 0.92653 1.21719 0.93053 1.04665 0.95034 1.74828 1.11177
1.16496 1.09865 1.78632 1.12832 1.17547 0.96673 1.44861 1.08614
1.44301 1.12026 0.70864 1.21491 0.92015 1.09311 0.91984 0.95499
0.92682 0.90357 0.92749 0.92529 0.93657 0.96205 0.92263 0.93472
0.96130 0.89200 0.92954 0.92375 0.78200 0.89674 0.89785 0.91248
0.89919 0.89531 0.89507
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.83 7.83 37.16 0.29 -1.53 16
2 C -0.09 -1.32 0.56 -154.39 -0.09 -1.41 16
3 C -0.14 -1.62 8.31 37.16 0.31 -1.31 16
4 C 0.16 3.05 5.19 -3.71 -0.02 3.03 16
5 N -0.59 -13.66 2.43 -172.32 -0.42 -14.08 16
6 C -0.26 -6.66 9.58 -15.05 -0.14 -6.81 16
7 H 0.07 1.65 7.88 -52.49 -0.41 1.24 16
8 C 0.01 0.15 4.92 -17.43 -0.09 0.06 16
9 N -0.90 -25.60 11.19 55.49 0.62 -24.98 16
10 Si 0.90 21.24 29.59 -169.99 -5.03 16.21 16
11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16
12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16
13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
14 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16
15 C -0.15 -2.78 5.31 -26.61 -0.14 -2.92 16
16 C 0.16 2.51 1.57 -67.89 -0.11 2.41 16
17 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16
18 N -0.73 -8.60 3.85 -53.77 -0.21 -8.81 16
19 C 0.51 6.41 7.10 -10.98 -0.08 6.34 16
20 O -0.52 -8.57 15.49 5.56 0.09 -8.48 16
21 C -0.03 -0.30 2.90 -92.78 -0.27 -0.56 16
22 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16
23 C -0.10 -0.80 4.67 -26.45 -0.12 -0.92 16
24 C -0.12 -0.71 5.90 -26.45 -0.16 -0.87 16
25 C -0.04 -0.28 6.30 -27.71 -0.17 -0.46 16
26 C 0.00 -0.05 7.11 -83.13 -0.59 -0.64 16
27 N -0.26 -3.59 12.39 33.17 0.41 -3.18 16
28 N -0.08 -1.07 13.40 60.35 0.81 -0.26 16
29 N -0.38 -4.17 6.77 33.41 0.23 -3.94 16
30 H 0.44 4.03 6.90 -190.07 -1.31 2.71 16
31 C -0.01 -0.13 6.38 -82.47 -0.53 -0.65 16
32 H 0.03 0.28 6.58 -51.93 -0.34 -0.06 16
33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16
34 H 0.08 1.32 5.97 -51.93 -0.31 1.01 16
35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
37 H 0.04 0.45 7.36 -51.93 -0.38 0.07 16
38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
39 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16
40 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16
41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
42 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16
43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16
44 H 0.06 1.06 6.34 -51.93 -0.33 0.73 16
45 H 0.38 3.57 4.83 -40.82 -0.20 3.37 16
46 H 0.08 0.63 8.14 -51.92 -0.42 0.21 16
47 H 0.08 0.86 7.73 -51.93 -0.40 0.45 16
48 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16
49 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16
50 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16
51 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16
LS Contribution 386.52 15.07 5.82 5.82
Total: -1.00 -31.93 386.52 -8.61 -40.54
By element:
Atomic # 1 Polarization: 12.42 SS G_CDS: -9.01 Total: 3.41 kcal
Atomic # 6 Polarization: -0.32 SS G_CDS: -1.92 Total: -2.24 kcal
Atomic # 7 Polarization: -56.69 SS G_CDS: 1.44 Total: -55.25 kcal
Atomic # 8 Polarization: -8.57 SS G_CDS: 0.09 Total: -8.48 kcal
Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -31.93 -8.61 -40.54 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000940985859.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.053 kcal
(2) G-P(sol) polarization free energy of solvation -31.925 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.128 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.613 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.514 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.37 seconds