Wall clock time and date at job start Wed Apr 1 2020 05:00:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53001 * 109.52642 * 2 1
4 4 C 1.53193 * 109.49498 * 239.92159 * 2 1 3
5 5 N 1.46922 * 108.77693 * 294.68238 * 4 2 1
6 6 C 1.36943 * 120.62973 * 126.36951 * 5 4 2
7 7 H 1.07994 * 119.99798 * 331.86716 * 6 5 4
8 8 C 1.38816 * 119.99514 * 151.86697 * 6 5 4
9 9 N 1.31613 * 120.00105 * 343.06701 * 8 6 5
10 10 Si 1.86806 * 119.99512 * 163.06557 * 8 6 5
11 11 H 1.48501 * 109.46862 * 60.00258 * 10 8 6
12 12 H 1.48496 * 109.46798 * 180.02562 * 10 8 6
13 13 H 1.48498 * 109.47163 * 300.00139 * 10 8 6
14 14 C 1.46926 * 118.74018 * 306.39357 * 5 4 2
15 15 C 1.53197 * 108.77361 * 53.60855 * 14 5 4
16 16 C 1.53039 * 109.49749 * 120.08259 * 2 1 3
17 17 H 1.08996 * 109.44740 * 178.59602 * 16 2 1
18 18 N 1.46500 * 109.46140 * 298.56531 * 16 2 1
19 19 C 1.34773 * 119.99759 * 205.06842 * 18 16 2
20 20 O 1.21278 * 120.00545 * 359.97438 * 19 18 16
21 21 C 1.50706 * 119.99608 * 180.02562 * 19 18 16
22 22 H 1.08997 * 109.68960 * 300.53936 * 21 19 18
23 23 C 1.53435 * 109.68972 * 179.97438 * 21 19 18
24 24 C 1.53111 * 109.55532 * 190.56156 * 23 21 19
25 25 C 1.53422 * 109.57920 * 70.05407 * 24 23 21
26 26 C 1.50596 * 108.36590 * 310.15730 * 25 24 23
27 27 N 1.32839 * 129.22502 * 196.53078 * 26 25 24
28 28 N 1.29022 * 108.66306 * 179.90096 * 27 26 25
29 29 N 1.29110 * 110.25802 * 0.03127 * 28 27 26
30 30 H 0.96998 * 126.00929 * 180.02562 * 29 28 27
31 31 C 1.34399 * 107.98383 * 0.07109 * 29 28 27
32 32 H 1.08999 * 109.46721 * 299.91893 * 1 2 3
33 33 H 1.09002 * 109.47088 * 59.91633 * 1 2 3
34 34 H 1.08997 * 109.47195 * 179.91606 * 1 2 3
35 35 H 1.08996 * 109.47089 * 180.02562 * 3 2 1
36 36 H 1.08999 * 109.47025 * 300.08444 * 3 2 1
37 37 H 1.09004 * 109.46826 * 60.08089 * 3 2 1
38 38 H 1.08999 * 109.58694 * 174.89455 * 4 2 1
39 39 H 1.09001 * 109.70406 * 54.54243 * 4 2 1
40 40 H 0.97003 * 119.99417 * 179.97438 * 9 8 6
41 41 H 1.09003 * 109.58960 * 293.82022 * 14 5 4
42 42 H 1.08995 * 109.70321 * 173.46477 * 14 5 4
43 43 H 1.09001 * 109.49295 * 185.41622 * 15 14 5
44 44 H 1.08997 * 109.49624 * 65.31824 * 15 14 5
45 45 H 0.96996 * 119.99699 * 25.07123 * 18 16 2
46 46 H 1.09007 * 109.45987 * 70.54012 * 23 21 19
47 47 H 1.09001 * 109.45033 * 310.58129 * 23 21 19
48 48 H 1.08998 * 109.45236 * 310.02256 * 24 23 21
49 49 H 1.08993 * 109.43535 * 190.07666 * 24 23 21
50 50 H 1.09003 * 109.68899 * 69.88629 * 25 24 23
51 51 H 1.08997 * 109.69163 * 190.42673 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0414 1.4420 0.0000
4 6 2.0413 -0.7238 -1.2496
5 7 1.6515 -2.1381 -1.1697
6 6 0.9630 -2.7311 -2.1943
7 1 0.3191 -2.1379 -2.8266
8 6 1.0929 -4.0946 -2.4199
9 7 2.1010 -4.7559 -1.8921
10 14 -0.1634 -4.9907 -3.4728
11 1 -0.1776 -4.4012 -4.8357
12 1 0.1982 -6.4284 -3.5585
13 1 -1.5094 -4.8549 -2.8606
14 6 2.0140 -2.9040 0.0306
15 6 1.5029 -2.1558 1.2659
16 6 2.0408 -0.7231 1.2483
17 1 3.1305 -0.7445 1.2350
18 7 1.5811 -0.0145 2.4453
19 6 2.2706 -0.1218 3.5983
20 8 3.2713 -0.8053 3.6452
21 6 1.7973 0.6067 4.8298
22 1 1.7679 1.6785 4.6338
23 6 2.7499 0.3201 5.9980
24 6 2.1336 0.8378 7.3006
25 6 0.9311 -0.0349 7.6828
26 6 0.0372 -0.1651 6.4778
27 7 -1.2288 -0.5616 6.4099
28 7 -1.6085 -0.5215 5.1774
29 7 -0.6418 -0.1139 4.4249
30 1 -0.6779 0.0010 3.4624
31 6 0.4236 0.1221 5.2094
32 1 -0.3633 0.5126 0.8907
33 1 -0.3633 0.5151 -0.8892
34 1 -0.3633 -1.0276 -0.0015
35 1 3.1314 1.4410 -0.0005
36 1 1.6773 1.9566 -0.8892
37 1 1.6797 1.9557 0.8908
38 1 3.1274 -0.6462 -1.2981
39 1 1.6027 -0.2736 -2.1403
40 1 2.1914 -5.7088 -2.0496
41 1 3.0979 -3.0043 0.0866
42 1 1.5573 -3.8927 -0.0126
43 1 1.8481 -2.6629 2.1669
44 1 0.4132 -2.1355 1.2539
45 1 0.7805 0.5319 2.4079
46 1 3.7015 0.8219 5.8221
47 1 2.9151 -0.7544 6.0765
48 1 1.8053 1.8679 7.1625
49 1 2.8785 0.7976 8.0952
50 1 1.2766 -1.0213 7.9921
51 1 0.3814 0.4343 8.4988
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000940985859.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:00:09
Heat of formation + Delta-G solvation = 45.435182 kcal
Electronic energy + Delta-G solvation = -32717.644673 eV
Core-core repulsion = 28653.060862 eV
Total energy + Delta-G solvation = -4064.583812 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.29 seconds
Orbital eigenvalues (eV)
-44.64338 -41.56440 -39.89042 -37.71010 -36.42347 -35.25201 -34.42611 -33.25619
-32.07313 -31.16808 -31.13802 -28.20458 -27.49068 -27.12357 -25.61575 -24.43786
-23.92471 -23.39215 -22.51738 -21.89873 -20.57651 -19.85251 -19.18665 -18.80218
-18.08315 -17.40643 -17.24731 -16.65159 -16.59099 -15.80991 -15.64847 -15.54528
-15.29979 -14.99734 -14.93897 -14.79884 -14.66893 -14.61888 -14.16900 -13.88982
-13.21690 -13.16617 -13.13264 -12.86370 -12.75042 -12.69899 -12.61422 -12.46848
-12.38510 -12.31695 -12.22235 -12.13829 -12.02590 -12.00430 -11.67997 -11.62269
-11.42713 -11.37989 -11.26178 -10.93922 -10.58195 -10.12906 -9.97551 -8.70928
-7.89421 -5.34814 0.35842 1.29730 1.44472 1.44743 1.47334 1.53409
1.64306 1.99315 2.48894 3.16116 3.26483 3.28878 3.51187 3.60206
3.65067 3.75439 3.90897 3.91391 4.00254 4.16978 4.28127 4.32025
4.33049 4.37572 4.45470 4.57397 4.58984 4.62582 4.77402 4.81506
4.87389 4.95420 4.98216 5.00111 5.00499 5.09732 5.12765 5.15790
5.19869 5.23276 5.32019 5.33236 5.39099 5.44373 5.48017 5.58480
5.62499 5.69041 5.70605 6.33959 6.36067 7.06232 7.11475 7.29261
7.82693 8.35062 9.17123
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.015385 B = 0.003091 C = 0.002936
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1819.576100 B = 9056.206113 C = 9533.177959
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.130 4.130
2 C -0.078 4.078
3 C -0.131 4.131
4 C 0.155 3.845
5 N -0.600 5.600
6 C -0.256 4.256
7 H 0.073 0.927
8 C -0.052 4.052
9 N -0.937 5.937
10 Si 0.963 3.037
11 H -0.273 1.273
12 H -0.299 1.299
13 H -0.278 1.278
14 C 0.185 3.815
15 C -0.134 4.134
16 C 0.177 3.823
17 H 0.061 0.939
18 N -0.712 5.712
19 C 0.511 3.489
20 O -0.560 6.560
21 C -0.020 4.020
22 H 0.159 0.841
23 C -0.099 4.099
24 C -0.107 4.107
25 C -0.039 4.039
26 C -0.012 4.012
27 N -0.288 5.288
28 N -0.109 5.109
29 N -0.370 5.370
30 H 0.452 0.548
31 C -0.008 4.008
32 H 0.067 0.933
33 H 0.062 0.938
34 H 0.045 0.955
35 H 0.048 0.952
36 H 0.069 0.931
37 H 0.075 0.925
38 H 0.007 0.993
39 H 0.063 0.937
40 H 0.248 0.752
41 H -0.013 1.013
42 H 0.052 0.948
43 H 0.039 0.961
44 H 0.064 0.936
45 H 0.401 0.599
46 H 0.097 0.903
47 H 0.057 0.943
48 H 0.087 0.913
49 H 0.104 0.896
50 H 0.085 0.915
51 H 0.100 0.900
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.246 19.285 16.631 25.496
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.081 4.081
3 C -0.188 4.188
4 C 0.029 3.971
5 N -0.323 5.323
6 C -0.386 4.386
7 H 0.090 0.910
8 C -0.247 4.247
9 N -0.583 5.583
10 Si 0.792 3.208
11 H -0.199 1.199
12 H -0.226 1.226
13 H -0.205 1.205
14 C 0.058 3.942
15 C -0.174 4.174
16 C 0.072 3.928
17 H 0.080 0.920
18 N -0.365 5.365
19 C 0.298 3.702
20 O -0.437 6.437
21 C -0.043 4.043
22 H 0.176 0.824
23 C -0.138 4.138
24 C -0.145 4.145
25 C -0.078 4.078
26 C -0.152 4.152
27 N -0.154 5.154
28 N -0.087 5.087
29 N -0.091 5.091
30 H 0.300 0.700
31 C -0.145 4.145
32 H 0.086 0.914
33 H 0.081 0.919
34 H 0.064 0.936
35 H 0.067 0.933
36 H 0.088 0.912
37 H 0.094 0.906
38 H 0.025 0.975
39 H 0.082 0.918
40 H 0.057 0.943
41 H 0.005 0.995
42 H 0.071 0.929
43 H 0.058 0.942
44 H 0.083 0.917
45 H 0.239 0.761
46 H 0.115 0.885
47 H 0.076 0.924
48 H 0.106 0.894
49 H 0.122 0.878
50 H 0.103 0.897
51 H 0.118 0.882
Dipole moment (debyes) X Y Z Total
from point charges -2.024 18.124 16.781 24.783
hybrid contribution 0.241 -0.971 -1.806 2.064
sum -1.783 17.154 14.975 22.841
Atomic orbital electron populations
1.21776 0.93293 1.01776 1.01882 1.21206 0.97146 0.96016 0.93697
1.21768 1.00763 0.93219 1.03088 1.21095 0.95702 0.84268 0.96074
1.44195 1.65075 1.06966 1.16022 1.19463 1.18383 0.91969 1.08754
0.90983 1.25797 0.98743 0.99156 1.01000 1.70188 1.30154 1.08089
1.49887 0.85400 0.79231 0.77046 0.79136 1.19880 1.22588 1.20458
1.20406 0.94621 0.94897 0.84262 1.22371 1.00802 0.96415 0.97823
1.20641 0.98104 0.90254 0.83779 0.92031 1.46218 1.29733 1.50516
1.10051 1.20985 0.83369 0.81080 0.84807 1.90751 1.27128 1.40837
1.84970 1.20206 0.87747 1.02662 0.93735 0.82372 1.21530 0.97668
1.02585 0.91992 1.21659 0.96442 0.99648 0.96770 1.20232 0.93551
1.02202 0.91833 1.22339 0.92557 1.03745 0.96602 1.74797 1.12787
1.17579 1.10188 1.78584 1.13935 1.19101 0.97073 1.44857 1.08379
1.43549 1.12339 0.70011 1.21747 0.92235 1.08741 0.91784 0.91424
0.91867 0.93634 0.93292 0.91195 0.90638 0.97500 0.91821 0.94303
0.99473 0.92942 0.94201 0.91702 0.76123 0.88482 0.92410 0.89412
0.87757 0.89706 0.88174
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.22 7.83 71.98 0.56 -2.66 16
2 C -0.08 -2.16 0.56 -52.10 -0.03 -2.18 16
3 C -0.13 -2.61 8.31 71.98 0.60 -2.01 16
4 C 0.15 5.88 5.19 86.36 0.45 6.33 16
5 N -0.60 -28.76 2.43 -699.09 -1.70 -30.46 16
6 C -0.26 -13.53 9.58 84.03 0.81 -12.72 16
7 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16
8 C -0.05 -2.86 4.92 84.86 0.42 -2.45 16
9 N -0.94 -56.01 11.19 21.65 0.24 -55.77 16
10 Si 0.96 44.67 29.59 68.60 2.03 46.70 16
11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16
12 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16
13 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16
14 C 0.18 9.06 5.30 86.36 0.46 9.52 16
15 C -0.13 -5.10 5.31 30.67 0.16 -4.94 16
16 C 0.18 5.35 1.57 45.02 0.07 5.42 16
17 H 0.06 2.22 7.58 -2.39 -0.02 2.20 16
18 N -0.71 -15.10 3.85 -442.41 -1.70 -16.80 16
19 C 0.51 11.74 7.10 87.66 0.62 12.36 16
20 O -0.56 -18.26 15.49 -3.02 -0.05 -18.30 16
21 C -0.02 -0.29 2.90 -12.19 -0.04 -0.33 16
22 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16
23 C -0.10 -1.33 4.67 30.78 0.14 -1.19 16
24 C -0.11 -0.88 5.90 30.77 0.18 -0.69 16
25 C -0.04 -0.51 6.30 29.96 0.19 -0.33 16
26 C -0.01 -0.24 7.11 41.78 0.30 0.06 16
27 N -0.29 -7.77 12.39 -48.98 -0.61 -8.38 16
28 N -0.11 -2.87 13.40 37.02 0.50 -2.37 16
29 N -0.37 -7.38 6.77 -48.23 -0.33 -7.70 16
30 H 0.45 6.92 6.90 -219.68 -1.52 5.41 16
31 C -0.01 -0.15 6.38 41.52 0.27 0.11 16
32 H 0.07 1.11 6.58 -2.39 -0.02 1.09 16
33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
34 H 0.04 1.46 5.97 -2.39 -0.01 1.44 16
35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
37 H 0.07 1.09 7.36 -2.39 -0.02 1.07 16
38 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16
39 H 0.06 2.34 7.93 -2.39 -0.02 2.32 16
40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16
41 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16
42 H 0.05 2.95 6.06 -2.39 -0.01 2.93 16
43 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16
44 H 0.06 2.38 6.34 -2.39 -0.02 2.37 16
45 H 0.40 5.81 4.83 -92.71 -0.45 5.36 16
46 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16
47 H 0.06 1.10 7.73 -2.39 -0.02 1.09 16
48 H 0.09 0.46 8.12 -2.39 -0.02 0.44 16
49 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16
50 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16
51 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16
Total: -1.00 -75.33 386.52 2.54 -72.78
By element:
Atomic # 1 Polarization: 17.00 SS G_CDS: -1.00 Total: 16.00 kcal
Atomic # 6 Polarization: -0.86 SS G_CDS: 5.16 Total: 4.30 kcal
Atomic # 7 Polarization: -117.88 SS G_CDS: -3.59 Total: -121.47 kcal
Atomic # 8 Polarization: -18.26 SS G_CDS: -0.05 Total: -18.30 kcal
Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal
Total: -75.33 2.54 -72.78 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000940985859.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 118.217 kcal
(2) G-P(sol) polarization free energy of solvation -75.326 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.891 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.781 kcal
(6) G-S(sol) free energy of system = (1) + (5) 45.435 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.29 seconds