Wall clock time and date at job start Wed Apr 1 2020 04:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.52652 * 2 1 4 4 C 1.53626 * 109.63188 * 239.91701 * 2 1 3 5 5 N 1.46932 * 108.54116 * 294.86245 * 4 2 1 6 6 C 1.36938 * 120.62754 * 126.37023 * 5 4 2 7 7 H 1.08004 * 119.99730 * 331.48387 * 6 5 4 8 8 C 1.38804 * 119.99905 * 151.48095 * 6 5 4 9 9 N 1.31627 * 120.00019 * 160.49235 * 8 6 5 10 10 Si 1.86797 * 120.00226 * 340.48765 * 8 6 5 11 11 H 1.48509 * 109.46954 * 95.15574 * 10 8 6 12 12 H 1.48497 * 109.47514 * 215.15800 * 10 8 6 13 13 H 1.48498 * 109.47259 * 335.15869 * 10 8 6 14 14 C 1.46922 * 118.73875 * 306.09790 * 5 4 2 15 15 C 1.53187 * 108.77666 * 53.86117 * 14 5 4 16 16 C 1.53038 * 109.49545 * 120.08219 * 2 1 3 17 17 H 1.09004 * 109.45941 * 178.60888 * 16 2 1 18 18 N 1.46499 * 109.46137 * 298.56226 * 16 2 1 19 19 C 1.34783 * 120.00076 * 205.07118 * 18 16 2 20 20 O 1.21596 * 119.99723 * 0.02562 * 19 18 16 21 21 C 1.47518 * 119.99753 * 179.97438 * 19 18 16 22 22 C 1.36604 * 125.76881 * 179.71336 * 21 19 18 23 23 N 1.34812 * 106.83484 * 179.90221 * 22 21 19 24 24 C 1.46503 * 126.59056 * 180.13461 * 23 22 21 25 25 C 1.52995 * 109.47294 * 125.24041 * 24 23 22 26 26 C 1.53002 * 117.50115 * 243.62118 * 25 24 23 27 27 C 1.53001 * 60.00144 * 252.51082 * 26 25 24 28 28 N 1.40205 * 106.81498 * 0.35718 * 23 22 21 29 29 N 1.28752 * 108.36837 * 359.77438 * 28 23 22 30 30 H 1.09002 * 109.47270 * 299.92104 * 1 2 3 31 31 H 1.08997 * 109.47051 * 59.91644 * 1 2 3 32 32 H 1.09000 * 109.47535 * 179.91665 * 1 2 3 33 33 H 1.09003 * 109.47216 * 180.08275 * 3 2 1 34 34 H 1.09002 * 109.47025 * 300.08137 * 3 2 1 35 35 H 1.09002 * 109.47123 * 60.08253 * 3 2 1 36 36 H 1.08999 * 109.73720 * 175.12782 * 4 2 1 37 37 H 1.08999 * 109.66758 * 54.55665 * 4 2 1 38 38 H 0.97000 * 119.99842 * 180.02562 * 9 8 6 39 39 H 1.09000 * 109.58243 * 173.65094 * 14 5 4 40 40 H 1.09002 * 109.58752 * 293.92437 * 14 5 4 41 41 H 1.08999 * 109.49979 * 65.31386 * 15 14 5 42 42 H 1.09005 * 109.49604 * 185.38225 * 15 14 5 43 43 H 0.97001 * 119.99909 * 25.06832 * 18 16 2 44 44 H 1.07993 * 126.57917 * 0.04499 * 22 21 19 45 45 H 1.08996 * 109.47334 * 245.24270 * 24 23 22 46 46 H 1.09008 * 109.47231 * 5.24260 * 24 23 22 47 47 H 1.08998 * 115.55256 * 29.33254 * 25 24 23 48 48 H 1.09000 * 117.49632 * 0.02562 * 26 25 24 49 49 H 1.09005 * 117.49475 * 145.02170 * 26 25 24 50 50 H 1.09002 * 117.49701 * 252.51135 * 27 26 25 51 51 H 1.08995 * 117.49658 * 107.48708 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0461 -0.7253 -1.2521 5 7 1.6514 -2.1382 -1.1696 6 6 0.9638 -2.7315 -2.1944 7 1 0.3187 -2.1388 -2.8262 8 6 1.0958 -4.0944 -2.4214 9 7 0.1845 -4.7364 -3.1213 10 14 2.5669 -5.0176 -1.7337 11 1 2.2011 -5.6328 -0.4324 12 1 2.9739 -6.0810 -2.6869 13 1 3.6953 -4.0730 -1.5347 14 6 2.0139 -2.9040 0.0308 15 6 1.5029 -2.1558 1.2660 16 6 2.0407 -0.7231 1.2483 17 1 3.1305 -0.7444 1.2353 18 7 1.5810 -0.0144 2.4453 19 6 2.2705 -0.1217 3.5984 20 8 3.2744 -0.8063 3.6451 21 6 1.8079 0.5924 4.8035 22 6 2.4098 0.5630 6.0294 23 7 1.6748 1.3461 6.8442 24 6 1.9358 1.6224 8.2591 25 6 2.0074 3.1348 8.4787 26 6 3.3407 3.7177 8.9514 27 6 2.1571 3.6335 9.9174 28 7 0.6098 1.8413 6.0785 29 7 0.7197 1.3772 4.8825 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 3.1314 1.4410 -0.0015 34 1 1.6773 1.9566 -0.8893 35 1 1.6797 1.9558 0.8907 36 1 3.1326 -0.6515 -1.2985 37 1 1.6088 -0.2752 -2.1432 38 1 0.2766 -5.6890 -3.2795 39 1 1.5553 -3.8918 -0.0138 40 1 3.0977 -3.0065 0.0854 41 1 0.4132 -2.1354 1.2540 42 1 1.8475 -2.6632 2.1671 43 1 0.7805 0.5320 2.4079 44 1 3.3042 0.0188 6.2944 45 1 1.1317 1.2049 8.8651 46 1 2.8831 1.1679 8.5493 47 1 1.4077 3.7378 7.7969 48 1 4.1669 3.0237 9.1056 49 1 3.6183 4.7044 8.5805 50 1 1.6562 4.5647 10.1820 51 1 2.2047 2.8840 10.7074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941129611.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:57 Heat of formation + Delta-G solvation = 110.388706 kcal Electronic energy + Delta-G solvation = -31078.737663 eV Core-core repulsion = 27016.970448 eV Total energy + Delta-G solvation = -4061.767215 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -42.44208 -39.96668 -38.38539 -38.05098 -34.83018 -34.45052 -33.08007 -31.73020 -31.23502 -30.08470 -28.35424 -26.88752 -26.32855 -25.27114 -23.54684 -23.06448 -22.84702 -21.99403 -21.41263 -21.10802 -20.09772 -18.83365 -17.90070 -16.88729 -16.63764 -16.36945 -16.01288 -15.65767 -15.05255 -14.91111 -14.80988 -14.56235 -14.30542 -14.06470 -13.97534 -13.84042 -13.55938 -13.15081 -12.71326 -12.66267 -12.33027 -12.26749 -12.17535 -11.99735 -11.72516 -11.60285 -11.53249 -11.25644 -11.20157 -11.17107 -10.91158 -10.77949 -10.54062 -10.47947 -10.34217 -10.17254 -9.98085 -9.87185 -9.63753 -9.51463 -9.43486 -8.71638 -8.54988 -6.90888 -5.90106 -3.27003 0.88514 1.58644 1.66326 3.04653 3.24787 3.32201 3.38665 3.53916 3.57511 3.68423 4.01861 4.08482 4.24993 4.30389 4.53645 4.57300 4.58262 4.71935 4.77189 4.97568 4.99215 5.01954 5.11811 5.23582 5.28058 5.32055 5.44164 5.46134 5.47394 5.57756 5.77655 5.79479 5.90020 5.98438 6.04319 6.07677 6.16054 6.26616 6.31410 6.37876 6.46488 6.54027 6.66771 6.69368 6.74109 6.80995 6.83126 7.07083 7.55333 7.81219 8.01470 8.29627 8.37687 8.98564 9.76916 10.14875 11.25697 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.002229 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.693825 B =12556.774411 C =13044.301235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.089 4.089 3 C -0.138 4.138 4 C 0.163 3.837 5 N -0.603 5.603 6 C -0.256 4.256 7 H 0.086 0.914 8 C 0.023 3.977 9 N -0.910 5.910 10 Si 0.881 3.119 11 H -0.290 1.290 12 H -0.304 1.304 13 H -0.268 1.268 14 C 0.130 3.870 15 C -0.145 4.145 16 C 0.163 3.837 17 H 0.084 0.916 18 N -0.703 5.703 19 C 0.600 3.400 20 O -0.542 6.542 21 C -0.097 4.097 22 C 0.092 3.908 23 N -0.359 5.359 24 C 0.154 3.846 25 C -0.177 4.177 26 C -0.176 4.176 27 C -0.165 4.165 28 N -0.064 5.064 29 N -0.204 5.204 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.025 0.975 37 H 0.068 0.932 38 H 0.262 0.738 39 H 0.073 0.927 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.405 0.595 44 H 0.204 0.796 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.121 0.879 48 H 0.099 0.901 49 H 0.099 0.901 50 H 0.102 0.898 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.038 16.855 25.656 31.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 C -0.196 4.196 4 C 0.036 3.964 5 N -0.326 5.326 6 C -0.384 4.384 7 H 0.103 0.897 8 C -0.176 4.176 9 N -0.553 5.553 10 Si 0.712 3.288 11 H -0.217 1.217 12 H -0.233 1.233 13 H -0.193 1.193 14 C 0.003 3.997 15 C -0.185 4.185 16 C 0.060 3.940 17 H 0.102 0.898 18 N -0.353 5.353 19 C 0.384 3.616 20 O -0.418 6.418 21 C -0.236 4.236 22 C -0.065 4.065 23 N -0.144 5.144 24 C 0.033 3.967 25 C -0.196 4.196 26 C -0.213 4.213 27 C -0.202 4.202 28 N -0.044 5.044 29 N -0.078 5.078 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.241 0.759 44 H 0.221 0.779 45 H 0.121 0.879 46 H 0.124 0.876 47 H 0.139 0.861 48 H 0.117 0.883 49 H 0.117 0.883 50 H 0.120 0.880 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.447 17.082 25.602 31.097 hybrid contribution 1.285 -0.988 0.619 1.735 sum 5.732 16.093 26.220 31.294 Atomic orbital electron populations 1.21805 0.93936 1.03331 1.00028 1.21426 0.96890 0.94767 0.96093 1.21812 1.00742 0.95653 1.01351 1.21042 0.96309 0.84802 0.94263 1.44359 1.65613 1.06788 1.15857 1.18892 1.19033 0.92372 1.08117 0.89669 1.25296 0.97806 0.96791 0.97688 1.69829 1.33346 1.08858 1.43236 0.86959 0.85482 0.79340 0.77017 1.21733 1.23292 1.19330 1.21306 0.97196 0.95561 0.85595 1.22471 1.01808 0.94921 0.99279 1.21021 0.99352 0.91388 0.82258 0.89772 1.46094 1.29559 1.49950 1.09705 1.16769 0.83116 0.80138 0.81614 1.90810 1.25543 1.40998 1.84469 1.21609 0.97849 1.07777 0.96369 1.23380 0.98278 0.94800 0.90023 1.50438 1.19653 1.33050 1.11294 1.21593 1.03821 0.95754 0.75497 1.22540 1.02748 0.94337 0.99930 1.23153 0.91553 1.03206 1.03384 1.22998 1.02019 1.03451 0.91751 1.81962 1.06265 1.19707 0.96485 1.74650 1.14756 1.06823 1.11561 0.94327 0.92793 0.90481 0.92956 0.92464 0.93112 0.95698 0.91344 0.92862 0.90908 0.95418 0.91062 0.92366 0.75862 0.77948 0.87865 0.87586 0.86124 0.88273 0.88266 0.87996 0.88178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 7.84 37.16 0.29 -1.84 16 2 C -0.09 -1.43 0.56 -154.17 -0.09 -1.52 16 3 C -0.14 -1.84 8.31 37.16 0.31 -1.53 16 4 C 0.16 3.14 5.24 -3.48 -0.02 3.12 16 5 N -0.60 -14.04 2.19 -172.06 -0.38 -14.41 16 6 C -0.26 -7.02 10.04 -15.06 -0.15 -7.17 16 7 H 0.09 2.49 8.06 -52.48 -0.42 2.07 16 8 C 0.02 0.66 5.24 -17.43 -0.09 0.57 16 9 N -0.91 -27.89 13.97 55.49 0.78 -27.12 16 10 Si 0.88 22.70 24.35 -169.99 -4.14 18.56 16 11 H -0.29 -7.29 6.73 56.52 0.38 -6.91 16 12 H -0.30 -7.99 7.11 56.52 0.40 -7.59 16 13 H -0.27 -6.79 6.41 56.52 0.36 -6.43 16 14 C 0.13 2.88 4.19 -3.72 -0.02 2.87 16 15 C -0.14 -2.72 5.31 -26.61 -0.14 -2.86 16 16 C 0.16 2.72 1.57 -67.89 -0.11 2.61 16 17 H 0.08 1.52 7.57 -51.93 -0.39 1.13 16 18 N -0.70 -10.31 4.29 -54.81 -0.23 -10.55 16 19 C 0.60 9.01 7.78 -12.47 -0.10 8.92 16 20 O -0.54 -9.47 16.52 5.28 0.09 -9.38 16 21 C -0.10 -1.23 6.99 -83.55 -0.58 -1.81 16 22 C 0.09 0.87 11.27 -16.83 -0.19 0.68 16 23 N -0.36 -3.07 3.69 -61.06 -0.23 -3.30 16 24 C 0.15 0.69 6.82 -4.04 -0.03 0.66 16 25 C -0.18 -0.85 5.93 -90.62 -0.54 -1.39 16 26 C -0.18 -0.67 10.18 -26.73 -0.27 -0.95 16 27 C -0.16 -0.53 10.25 -26.73 -0.27 -0.80 16 28 N -0.06 -0.75 13.48 60.35 0.81 0.06 16 29 N -0.20 -2.70 12.04 32.85 0.40 -2.30 16 30 H 0.04 0.53 6.58 -51.93 -0.34 0.19 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.45 5.97 -51.93 -0.31 1.14 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.63 7.36 -51.93 -0.38 0.25 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 1.32 7.93 -51.93 -0.41 0.90 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.07 1.77 4.59 -51.93 -0.24 1.54 16 40 H 0.03 0.63 6.93 -51.93 -0.36 0.27 16 41 H 0.07 1.36 6.34 -51.93 -0.33 1.03 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.40 5.50 6.35 -40.82 -0.26 5.25 16 44 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 45 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.11 0.21 7.82 -51.92 -0.41 -0.20 16 47 H 0.12 0.82 7.94 -51.93 -0.41 0.41 16 48 H 0.10 0.29 8.03 -51.93 -0.42 -0.13 16 49 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 51 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 LS Contribution 399.42 15.07 6.02 6.02 Total: -1.00 -33.53 399.42 -6.99 -40.51 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.11 Total: 2.36 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.99 Total: -0.45 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: 1.15 Total: -57.62 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.14 Total: 18.56 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.53 -6.99 -40.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941129611.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.900 kcal (2) G-P(sol) polarization free energy of solvation -33.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds