Wall clock time and date at job start Wed Apr 1 2020 04:58:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.53001 * 109.52652 * 2 1
4 4 C 1.53626 * 109.63188 * 239.91701 * 2 1 3
5 5 N 1.46932 * 108.54116 * 294.86245 * 4 2 1
6 6 C 1.36938 * 120.62754 * 126.37023 * 5 4 2
7 7 H 1.08004 * 119.99730 * 331.48387 * 6 5 4
8 8 C 1.38804 * 119.99905 * 151.48095 * 6 5 4
9 9 N 1.31627 * 120.00019 * 160.49235 * 8 6 5
10 10 Si 1.86797 * 120.00226 * 340.48765 * 8 6 5
11 11 H 1.48509 * 109.46954 * 95.15574 * 10 8 6
12 12 H 1.48497 * 109.47514 * 215.15800 * 10 8 6
13 13 H 1.48498 * 109.47259 * 335.15869 * 10 8 6
14 14 C 1.46922 * 118.73875 * 306.09790 * 5 4 2
15 15 C 1.53187 * 108.77666 * 53.86117 * 14 5 4
16 16 C 1.53038 * 109.49545 * 120.08219 * 2 1 3
17 17 H 1.09004 * 109.45941 * 178.60888 * 16 2 1
18 18 N 1.46499 * 109.46137 * 298.56226 * 16 2 1
19 19 C 1.34783 * 120.00076 * 205.07118 * 18 16 2
20 20 O 1.21596 * 119.99723 * 0.02562 * 19 18 16
21 21 C 1.47518 * 119.99753 * 179.97438 * 19 18 16
22 22 C 1.36604 * 125.76881 * 179.71336 * 21 19 18
23 23 N 1.34812 * 106.83484 * 179.90221 * 22 21 19
24 24 C 1.46503 * 126.59056 * 180.13461 * 23 22 21
25 25 C 1.52995 * 109.47294 * 125.24041 * 24 23 22
26 26 C 1.53002 * 117.50115 * 243.62118 * 25 24 23
27 27 C 1.53001 * 60.00144 * 252.51082 * 26 25 24
28 28 N 1.40205 * 106.81498 * 0.35718 * 23 22 21
29 29 N 1.28752 * 108.36837 * 359.77438 * 28 23 22
30 30 H 1.09002 * 109.47270 * 299.92104 * 1 2 3
31 31 H 1.08997 * 109.47051 * 59.91644 * 1 2 3
32 32 H 1.09000 * 109.47535 * 179.91665 * 1 2 3
33 33 H 1.09003 * 109.47216 * 180.08275 * 3 2 1
34 34 H 1.09002 * 109.47025 * 300.08137 * 3 2 1
35 35 H 1.09002 * 109.47123 * 60.08253 * 3 2 1
36 36 H 1.08999 * 109.73720 * 175.12782 * 4 2 1
37 37 H 1.08999 * 109.66758 * 54.55665 * 4 2 1
38 38 H 0.97000 * 119.99842 * 180.02562 * 9 8 6
39 39 H 1.09000 * 109.58243 * 173.65094 * 14 5 4
40 40 H 1.09002 * 109.58752 * 293.92437 * 14 5 4
41 41 H 1.08999 * 109.49979 * 65.31386 * 15 14 5
42 42 H 1.09005 * 109.49604 * 185.38225 * 15 14 5
43 43 H 0.97001 * 119.99909 * 25.06832 * 18 16 2
44 44 H 1.07993 * 126.57917 * 0.04499 * 22 21 19
45 45 H 1.08996 * 109.47334 * 245.24270 * 24 23 22
46 46 H 1.09008 * 109.47231 * 5.24260 * 24 23 22
47 47 H 1.08998 * 115.55256 * 29.33254 * 25 24 23
48 48 H 1.09000 * 117.49632 * 0.02562 * 26 25 24
49 49 H 1.09005 * 117.49475 * 145.02170 * 26 25 24
50 50 H 1.09002 * 117.49701 * 252.51135 * 27 26 25
51 51 H 1.08995 * 117.49658 * 107.48708 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0414 1.4420 0.0000
4 6 2.0461 -0.7253 -1.2521
5 7 1.6514 -2.1382 -1.1696
6 6 0.9638 -2.7315 -2.1944
7 1 0.3187 -2.1388 -2.8262
8 6 1.0958 -4.0944 -2.4214
9 7 0.1845 -4.7364 -3.1213
10 14 2.5669 -5.0176 -1.7337
11 1 2.2011 -5.6328 -0.4324
12 1 2.9739 -6.0810 -2.6869
13 1 3.6953 -4.0730 -1.5347
14 6 2.0139 -2.9040 0.0308
15 6 1.5029 -2.1558 1.2660
16 6 2.0407 -0.7231 1.2483
17 1 3.1305 -0.7444 1.2353
18 7 1.5810 -0.0144 2.4453
19 6 2.2705 -0.1217 3.5984
20 8 3.2744 -0.8063 3.6451
21 6 1.8079 0.5924 4.8035
22 6 2.4098 0.5630 6.0294
23 7 1.6748 1.3461 6.8442
24 6 1.9358 1.6224 8.2591
25 6 2.0074 3.1348 8.4787
26 6 3.3407 3.7177 8.9514
27 6 2.1571 3.6335 9.9174
28 7 0.6098 1.8413 6.0785
29 7 0.7197 1.3772 4.8825
30 1 -0.3634 0.5126 0.8907
31 1 -0.3633 0.5151 -0.8892
32 1 -0.3634 -1.0276 -0.0015
33 1 3.1314 1.4410 -0.0015
34 1 1.6773 1.9566 -0.8893
35 1 1.6797 1.9558 0.8907
36 1 3.1326 -0.6515 -1.2985
37 1 1.6088 -0.2752 -2.1432
38 1 0.2766 -5.6890 -3.2795
39 1 1.5553 -3.8918 -0.0138
40 1 3.0977 -3.0065 0.0854
41 1 0.4132 -2.1354 1.2540
42 1 1.8475 -2.6632 2.1671
43 1 0.7805 0.5320 2.4079
44 1 3.3042 0.0188 6.2944
45 1 1.1317 1.2049 8.8651
46 1 2.8831 1.1679 8.5493
47 1 1.4077 3.7378 7.7969
48 1 4.1669 3.0237 9.1056
49 1 3.6183 4.7044 8.5805
50 1 1.6562 4.5647 10.1820
51 1 2.2047 2.8840 10.7074
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000941129611.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:58:55
Heat of formation + Delta-G solvation = 88.141291 kcal
Electronic energy + Delta-G solvation = -31079.702383 eV
Core-core repulsion = 27016.970448 eV
Total energy + Delta-G solvation = -4062.731936 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.33 seconds
Orbital eigenvalues (eV)
-43.25042 -41.28854 -39.52299 -38.62148 -36.46236 -35.18836 -34.42624 -33.64645
-32.34813 -31.51473 -28.95608 -28.17065 -27.86753 -26.84795 -24.76500 -23.76715
-23.27119 -23.22435 -22.88791 -22.05297 -21.04687 -19.94585 -19.03729 -18.68194
-17.56424 -17.40732 -17.18128 -16.79910 -16.21163 -15.96663 -15.90017 -15.60818
-15.50360 -15.33973 -15.07074 -15.02683 -14.72638 -14.36538 -14.31266 -13.98425
-13.83950 -13.33698 -13.30516 -13.00411 -12.84135 -12.73208 -12.64902 -12.43232
-12.42622 -12.26142 -12.15217 -12.01056 -11.84868 -11.63699 -11.51485 -11.42017
-11.34581 -11.27751 -11.10126 -10.97565 -10.70149 -10.39122 -9.96471 -8.88865
-8.13290 -5.45341 0.14345 0.61505 1.06145 1.31550 1.41971 1.50590
2.11311 2.24854 2.43600 2.78041 3.07975 3.17130 3.25046 3.36326
3.64034 3.73813 3.84855 3.87712 3.92130 3.96916 4.00614 4.04404
4.14530 4.25777 4.34399 4.43624 4.47481 4.51150 4.55412 4.72272
4.78049 4.78385 4.80538 4.87700 4.91905 4.93419 4.99120 5.02896
5.10274 5.12940 5.18066 5.22350 5.23884 5.29409 5.40571 5.45621
5.49212 5.65278 5.90680 6.16894 6.45214 6.90193 6.93628 7.15335
7.64718 8.06471 9.06309
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.023373 B = 0.002229 C = 0.002146
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1197.693825 B =12556.774411 C =13044.301235
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C -0.080 4.080
3 C -0.130 4.130
4 C 0.157 3.843
5 N -0.613 5.613
6 C -0.235 4.235
7 H 0.058 0.942
8 C -0.034 4.034
9 N -0.956 5.956
10 Si 0.939 3.061
11 H -0.283 1.283
12 H -0.312 1.312
13 H -0.260 1.260
14 C 0.127 3.873
15 C -0.135 4.135
16 C 0.174 3.826
17 H 0.076 0.924
18 N -0.697 5.697
19 C 0.603 3.397
20 O -0.568 6.568
21 C -0.123 4.123
22 C 0.111 3.889
23 N -0.345 5.345
24 C 0.146 3.854
25 C -0.190 4.190
26 C -0.177 4.177
27 C -0.154 4.154
28 N -0.085 5.085
29 N -0.224 5.224
30 H 0.062 0.938
31 H 0.056 0.944
32 H 0.044 0.956
33 H 0.056 0.944
34 H 0.068 0.932
35 H 0.063 0.937
36 H 0.034 0.966
37 H 0.066 0.934
38 H 0.260 0.740
39 H 0.049 0.951
40 H 0.030 0.970
41 H 0.066 0.934
42 H 0.061 0.939
43 H 0.411 0.589
44 H 0.236 0.764
45 H 0.118 0.882
46 H 0.141 0.859
47 H 0.095 0.905
48 H 0.114 0.886
49 H 0.091 0.909
50 H 0.100 0.900
51 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.676 18.425 28.912 34.928
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.082 4.082
3 C -0.188 4.188
4 C 0.032 3.968
5 N -0.336 5.336
6 C -0.365 4.365
7 H 0.076 0.924
8 C -0.229 4.229
9 N -0.603 5.603
10 Si 0.769 3.231
11 H -0.210 1.210
12 H -0.241 1.241
13 H -0.184 1.184
14 C 0.002 3.998
15 C -0.175 4.175
16 C 0.069 3.931
17 H 0.094 0.906
18 N -0.347 5.347
19 C 0.389 3.611
20 O -0.447 6.447
21 C -0.263 4.263
22 C -0.047 4.047
23 N -0.129 5.129
24 C 0.027 3.973
25 C -0.209 4.209
26 C -0.214 4.214
27 C -0.191 4.191
28 N -0.065 5.065
29 N -0.098 5.098
30 H 0.081 0.919
31 H 0.075 0.925
32 H 0.063 0.937
33 H 0.075 0.925
34 H 0.087 0.913
35 H 0.082 0.918
36 H 0.052 0.948
37 H 0.084 0.916
38 H 0.069 0.931
39 H 0.067 0.933
40 H 0.048 0.952
41 H 0.085 0.915
42 H 0.080 0.920
43 H 0.249 0.751
44 H 0.252 0.748
45 H 0.136 0.864
46 H 0.158 0.842
47 H 0.113 0.887
48 H 0.132 0.868
49 H 0.110 0.890
50 H 0.118 0.882
51 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges 6.082 18.723 28.918 34.983
hybrid contribution 0.749 -1.348 -0.277 1.566
sum 6.831 17.376 28.641 34.189
Atomic orbital electron populations
1.21734 0.93873 1.01574 1.01395 1.21279 0.96771 0.96087 0.94038
1.21746 1.01016 0.93427 1.02606 1.21245 0.96868 0.82671 0.96035
1.44428 1.65561 1.08347 1.15303 1.18832 1.17707 0.92054 1.07886
0.92417 1.25857 1.00011 0.97922 0.99092 1.69948 1.35213 1.09041
1.46079 0.86014 0.82655 0.78074 0.76361 1.21016 1.24098 1.18424
1.21270 0.97046 0.94924 0.86581 1.22310 1.01413 0.96226 0.97519
1.20733 0.98656 0.90274 0.83424 0.90612 1.45908 1.29837 1.49792
1.09202 1.17001 0.82513 0.79606 0.82022 1.90791 1.26685 1.42265
1.84970 1.21426 0.99049 1.09191 0.96663 1.23836 0.98325 0.93703
0.88860 1.50707 1.18218 1.31611 1.12369 1.22067 1.06178 0.95807
0.73225 1.22426 1.03384 0.94307 1.00760 1.23239 0.91746 1.03141
1.03287 1.23090 1.01049 1.03712 0.91241 1.81892 1.07740 1.20377
0.96493 1.74618 1.15323 1.07380 1.12480 0.91908 0.92526 0.93724
0.92495 0.91291 0.91807 0.94793 0.91590 0.93142 0.93268 0.95224
0.91533 0.92035 0.75092 0.74779 0.86432 0.84151 0.88683 0.86789
0.89030 0.88161 0.86343
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.96 7.84 71.98 0.56 -3.39 16
2 C -0.08 -2.42 0.56 -51.96 -0.03 -2.45 16
3 C -0.13 -3.13 8.31 71.98 0.60 -2.53 16
4 C 0.16 5.93 5.24 86.51 0.45 6.38 16
5 N -0.61 -28.57 2.19 -698.26 -1.53 -30.10 16
6 C -0.24 -13.20 10.04 84.03 0.84 -12.35 16
7 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16
8 C -0.03 -2.02 5.24 84.86 0.45 -1.58 16
9 N -0.96 -60.58 13.97 21.65 0.30 -60.28 16
10 Si 0.94 47.84 24.35 68.60 1.67 49.51 16
11 H -0.28 -13.95 6.73 99.48 0.67 -13.28 16
12 H -0.31 -16.13 7.11 99.48 0.71 -15.43 16
13 H -0.26 -12.70 6.41 99.48 0.64 -12.06 16
14 C 0.13 5.64 4.19 86.36 0.36 6.00 16
15 C -0.13 -4.98 5.31 30.67 0.16 -4.82 16
16 C 0.17 5.53 1.57 45.02 0.07 5.60 16
17 H 0.08 2.61 7.57 -2.38 -0.02 2.59 16
18 N -0.70 -19.29 4.29 -445.58 -1.91 -21.20 16
19 C 0.60 17.09 7.78 86.69 0.67 17.76 16
20 O -0.57 -18.88 16.52 -4.02 -0.07 -18.95 16
21 C -0.12 -2.91 6.99 40.82 0.29 -2.63 16
22 C 0.11 1.77 11.27 83.85 0.95 2.72 16
23 N -0.34 -4.99 3.69 -347.10 -1.28 -6.27 16
24 C 0.15 0.82 6.82 86.38 0.59 1.41 16
25 C -0.19 -1.42 5.93 -10.79 -0.06 -1.49 16
26 C -0.18 -0.92 10.18 30.60 0.31 -0.61 16
27 C -0.15 -0.59 10.25 30.60 0.31 -0.27 16
28 N -0.08 -1.87 13.48 37.02 0.50 -1.38 16
29 N -0.22 -5.64 12.04 -49.99 -0.60 -6.24 16
30 H 0.06 1.61 6.58 -2.39 -0.02 1.60 16
31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
32 H 0.04 1.67 5.97 -2.39 -0.01 1.66 16
33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16
34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16
35 H 0.06 1.40 7.36 -2.39 -0.02 1.38 16
36 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16
37 H 0.07 2.50 7.93 -2.39 -0.02 2.48 16
38 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16
39 H 0.05 2.41 4.59 -2.39 -0.01 2.39 16
40 H 0.03 1.31 6.93 -2.39 -0.02 1.29 16
41 H 0.07 2.52 6.34 -2.39 -0.02 2.51 16
42 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16
43 H 0.41 10.42 6.35 -92.71 -0.59 9.83 16
44 H 0.24 2.06 8.06 -2.91 -0.02 2.04 16
45 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16
46 H 0.14 -0.14 7.82 -2.38 -0.02 -0.15 16
47 H 0.09 1.23 7.94 -2.39 -0.02 1.22 16
48 H 0.11 0.25 8.03 -2.39 -0.02 0.24 16
49 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16
50 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16
51 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16
Total: -1.00 -74.96 399.42 3.86 -71.10
By element:
Atomic # 1 Polarization: 15.81 SS G_CDS: 0.25 Total: 16.06 kcal
Atomic # 6 Polarization: 1.22 SS G_CDS: 6.52 Total: 7.74 kcal
Atomic # 7 Polarization: -120.94 SS G_CDS: -4.52 Total: -125.46 kcal
Atomic # 8 Polarization: -18.88 SS G_CDS: -0.07 Total: -18.95 kcal
Atomic # 14 Polarization: 47.84 SS G_CDS: 1.67 Total: 49.51 kcal
Total: -74.96 3.86 -71.10 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000941129611.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 159.240 kcal
(2) G-P(sol) polarization free energy of solvation -74.958 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.282 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.099 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.141 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.33 seconds