Wall clock time and date at job start Wed Apr 1 2020 04:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.52652 * 2 1 4 4 C 1.53626 * 109.63188 * 239.91701 * 2 1 3 5 5 N 1.46932 * 108.54116 * 294.86245 * 4 2 1 6 6 C 1.36938 * 120.62754 * 126.37023 * 5 4 2 7 7 H 1.08004 * 119.99730 * 331.48387 * 6 5 4 8 8 C 1.38804 * 119.99905 * 151.48095 * 6 5 4 9 9 N 1.31627 * 120.00019 * 160.49235 * 8 6 5 10 10 Si 1.86797 * 120.00226 * 340.48765 * 8 6 5 11 11 H 1.48509 * 109.46954 * 95.15574 * 10 8 6 12 12 H 1.48497 * 109.47514 * 215.15800 * 10 8 6 13 13 H 1.48498 * 109.47259 * 335.15869 * 10 8 6 14 14 C 1.46922 * 118.73875 * 306.09790 * 5 4 2 15 15 C 1.53187 * 108.77666 * 53.86117 * 14 5 4 16 16 C 1.53038 * 109.49545 * 120.08219 * 2 1 3 17 17 H 1.09004 * 109.45941 * 178.60888 * 16 2 1 18 18 N 1.46499 * 109.46137 * 298.56226 * 16 2 1 19 19 C 1.34783 * 120.00076 * 205.07118 * 18 16 2 20 20 O 1.21596 * 119.99723 * 0.02562 * 19 18 16 21 21 C 1.47518 * 119.99753 * 179.97438 * 19 18 16 22 22 C 1.36604 * 125.76881 * 179.71336 * 21 19 18 23 23 N 1.34812 * 106.83484 * 179.90221 * 22 21 19 24 24 C 1.46503 * 126.59056 * 180.13461 * 23 22 21 25 25 C 1.52995 * 109.47294 * 125.24041 * 24 23 22 26 26 C 1.53002 * 117.50115 * 243.62118 * 25 24 23 27 27 C 1.53001 * 60.00144 * 252.51082 * 26 25 24 28 28 N 1.40205 * 106.81498 * 0.35718 * 23 22 21 29 29 N 1.28752 * 108.36837 * 359.77438 * 28 23 22 30 30 H 1.09002 * 109.47270 * 299.92104 * 1 2 3 31 31 H 1.08997 * 109.47051 * 59.91644 * 1 2 3 32 32 H 1.09000 * 109.47535 * 179.91665 * 1 2 3 33 33 H 1.09003 * 109.47216 * 180.08275 * 3 2 1 34 34 H 1.09002 * 109.47025 * 300.08137 * 3 2 1 35 35 H 1.09002 * 109.47123 * 60.08253 * 3 2 1 36 36 H 1.08999 * 109.73720 * 175.12782 * 4 2 1 37 37 H 1.08999 * 109.66758 * 54.55665 * 4 2 1 38 38 H 0.97000 * 119.99842 * 180.02562 * 9 8 6 39 39 H 1.09000 * 109.58243 * 173.65094 * 14 5 4 40 40 H 1.09002 * 109.58752 * 293.92437 * 14 5 4 41 41 H 1.08999 * 109.49979 * 65.31386 * 15 14 5 42 42 H 1.09005 * 109.49604 * 185.38225 * 15 14 5 43 43 H 0.97001 * 119.99909 * 25.06832 * 18 16 2 44 44 H 1.07993 * 126.57917 * 0.04499 * 22 21 19 45 45 H 1.08996 * 109.47334 * 245.24270 * 24 23 22 46 46 H 1.09008 * 109.47231 * 5.24260 * 24 23 22 47 47 H 1.08998 * 115.55256 * 29.33254 * 25 24 23 48 48 H 1.09000 * 117.49632 * 0.02562 * 26 25 24 49 49 H 1.09005 * 117.49475 * 145.02170 * 26 25 24 50 50 H 1.09002 * 117.49701 * 252.51135 * 27 26 25 51 51 H 1.08995 * 117.49658 * 107.48708 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0414 1.4420 0.0000 4 6 2.0461 -0.7253 -1.2521 5 7 1.6514 -2.1382 -1.1696 6 6 0.9638 -2.7315 -2.1944 7 1 0.3187 -2.1388 -2.8262 8 6 1.0958 -4.0944 -2.4214 9 7 0.1845 -4.7364 -3.1213 10 14 2.5669 -5.0176 -1.7337 11 1 2.2011 -5.6328 -0.4324 12 1 2.9739 -6.0810 -2.6869 13 1 3.6953 -4.0730 -1.5347 14 6 2.0139 -2.9040 0.0308 15 6 1.5029 -2.1558 1.2660 16 6 2.0407 -0.7231 1.2483 17 1 3.1305 -0.7444 1.2353 18 7 1.5810 -0.0144 2.4453 19 6 2.2705 -0.1217 3.5984 20 8 3.2744 -0.8063 3.6451 21 6 1.8079 0.5924 4.8035 22 6 2.4098 0.5630 6.0294 23 7 1.6748 1.3461 6.8442 24 6 1.9358 1.6224 8.2591 25 6 2.0074 3.1348 8.4787 26 6 3.3407 3.7177 8.9514 27 6 2.1571 3.6335 9.9174 28 7 0.6098 1.8413 6.0785 29 7 0.7197 1.3772 4.8825 30 1 -0.3634 0.5126 0.8907 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3634 -1.0276 -0.0015 33 1 3.1314 1.4410 -0.0015 34 1 1.6773 1.9566 -0.8893 35 1 1.6797 1.9558 0.8907 36 1 3.1326 -0.6515 -1.2985 37 1 1.6088 -0.2752 -2.1432 38 1 0.2766 -5.6890 -3.2795 39 1 1.5553 -3.8918 -0.0138 40 1 3.0977 -3.0065 0.0854 41 1 0.4132 -2.1354 1.2540 42 1 1.8475 -2.6632 2.1671 43 1 0.7805 0.5320 2.4079 44 1 3.3042 0.0188 6.2944 45 1 1.1317 1.2049 8.8651 46 1 2.8831 1.1679 8.5493 47 1 1.4077 3.7378 7.7969 48 1 4.1669 3.0237 9.1056 49 1 3.6183 4.7044 8.5805 50 1 1.6562 4.5647 10.1820 51 1 2.2047 2.8840 10.7074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941129611.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:55 Heat of formation + Delta-G solvation = 88.141291 kcal Electronic energy + Delta-G solvation = -31079.702383 eV Core-core repulsion = 27016.970448 eV Total energy + Delta-G solvation = -4062.731936 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -43.25042 -41.28854 -39.52299 -38.62148 -36.46236 -35.18836 -34.42624 -33.64645 -32.34813 -31.51473 -28.95608 -28.17065 -27.86753 -26.84795 -24.76500 -23.76715 -23.27119 -23.22435 -22.88791 -22.05297 -21.04687 -19.94585 -19.03729 -18.68194 -17.56424 -17.40732 -17.18128 -16.79910 -16.21163 -15.96663 -15.90017 -15.60818 -15.50360 -15.33973 -15.07074 -15.02683 -14.72638 -14.36538 -14.31266 -13.98425 -13.83950 -13.33698 -13.30516 -13.00411 -12.84135 -12.73208 -12.64902 -12.43232 -12.42622 -12.26142 -12.15217 -12.01056 -11.84868 -11.63699 -11.51485 -11.42017 -11.34581 -11.27751 -11.10126 -10.97565 -10.70149 -10.39122 -9.96471 -8.88865 -8.13290 -5.45341 0.14345 0.61505 1.06145 1.31550 1.41971 1.50590 2.11311 2.24854 2.43600 2.78041 3.07975 3.17130 3.25046 3.36326 3.64034 3.73813 3.84855 3.87712 3.92130 3.96916 4.00614 4.04404 4.14530 4.25777 4.34399 4.43624 4.47481 4.51150 4.55412 4.72272 4.78049 4.78385 4.80538 4.87700 4.91905 4.93419 4.99120 5.02896 5.10274 5.12940 5.18066 5.22350 5.23884 5.29409 5.40571 5.45621 5.49212 5.65278 5.90680 6.16894 6.45214 6.90193 6.93628 7.15335 7.64718 8.06471 9.06309 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.002229 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.693825 B =12556.774411 C =13044.301235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.080 4.080 3 C -0.130 4.130 4 C 0.157 3.843 5 N -0.613 5.613 6 C -0.235 4.235 7 H 0.058 0.942 8 C -0.034 4.034 9 N -0.956 5.956 10 Si 0.939 3.061 11 H -0.283 1.283 12 H -0.312 1.312 13 H -0.260 1.260 14 C 0.127 3.873 15 C -0.135 4.135 16 C 0.174 3.826 17 H 0.076 0.924 18 N -0.697 5.697 19 C 0.603 3.397 20 O -0.568 6.568 21 C -0.123 4.123 22 C 0.111 3.889 23 N -0.345 5.345 24 C 0.146 3.854 25 C -0.190 4.190 26 C -0.177 4.177 27 C -0.154 4.154 28 N -0.085 5.085 29 N -0.224 5.224 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.034 0.966 37 H 0.066 0.934 38 H 0.260 0.740 39 H 0.049 0.951 40 H 0.030 0.970 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.411 0.589 44 H 0.236 0.764 45 H 0.118 0.882 46 H 0.141 0.859 47 H 0.095 0.905 48 H 0.114 0.886 49 H 0.091 0.909 50 H 0.100 0.900 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.676 18.425 28.912 34.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.082 4.082 3 C -0.188 4.188 4 C 0.032 3.968 5 N -0.336 5.336 6 C -0.365 4.365 7 H 0.076 0.924 8 C -0.229 4.229 9 N -0.603 5.603 10 Si 0.769 3.231 11 H -0.210 1.210 12 H -0.241 1.241 13 H -0.184 1.184 14 C 0.002 3.998 15 C -0.175 4.175 16 C 0.069 3.931 17 H 0.094 0.906 18 N -0.347 5.347 19 C 0.389 3.611 20 O -0.447 6.447 21 C -0.263 4.263 22 C -0.047 4.047 23 N -0.129 5.129 24 C 0.027 3.973 25 C -0.209 4.209 26 C -0.214 4.214 27 C -0.191 4.191 28 N -0.065 5.065 29 N -0.098 5.098 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.080 0.920 43 H 0.249 0.751 44 H 0.252 0.748 45 H 0.136 0.864 46 H 0.158 0.842 47 H 0.113 0.887 48 H 0.132 0.868 49 H 0.110 0.890 50 H 0.118 0.882 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.082 18.723 28.918 34.983 hybrid contribution 0.749 -1.348 -0.277 1.566 sum 6.831 17.376 28.641 34.189 Atomic orbital electron populations 1.21734 0.93873 1.01574 1.01395 1.21279 0.96771 0.96087 0.94038 1.21746 1.01016 0.93427 1.02606 1.21245 0.96868 0.82671 0.96035 1.44428 1.65561 1.08347 1.15303 1.18832 1.17707 0.92054 1.07886 0.92417 1.25857 1.00011 0.97922 0.99092 1.69948 1.35213 1.09041 1.46079 0.86014 0.82655 0.78074 0.76361 1.21016 1.24098 1.18424 1.21270 0.97046 0.94924 0.86581 1.22310 1.01413 0.96226 0.97519 1.20733 0.98656 0.90274 0.83424 0.90612 1.45908 1.29837 1.49792 1.09202 1.17001 0.82513 0.79606 0.82022 1.90791 1.26685 1.42265 1.84970 1.21426 0.99049 1.09191 0.96663 1.23836 0.98325 0.93703 0.88860 1.50707 1.18218 1.31611 1.12369 1.22067 1.06178 0.95807 0.73225 1.22426 1.03384 0.94307 1.00760 1.23239 0.91746 1.03141 1.03287 1.23090 1.01049 1.03712 0.91241 1.81892 1.07740 1.20377 0.96493 1.74618 1.15323 1.07380 1.12480 0.91908 0.92526 0.93724 0.92495 0.91291 0.91807 0.94793 0.91590 0.93142 0.93268 0.95224 0.91533 0.92035 0.75092 0.74779 0.86432 0.84151 0.88683 0.86789 0.89030 0.88161 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 7.84 71.98 0.56 -3.39 16 2 C -0.08 -2.42 0.56 -51.96 -0.03 -2.45 16 3 C -0.13 -3.13 8.31 71.98 0.60 -2.53 16 4 C 0.16 5.93 5.24 86.51 0.45 6.38 16 5 N -0.61 -28.57 2.19 -698.26 -1.53 -30.10 16 6 C -0.24 -13.20 10.04 84.03 0.84 -12.35 16 7 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 8 C -0.03 -2.02 5.24 84.86 0.45 -1.58 16 9 N -0.96 -60.58 13.97 21.65 0.30 -60.28 16 10 Si 0.94 47.84 24.35 68.60 1.67 49.51 16 11 H -0.28 -13.95 6.73 99.48 0.67 -13.28 16 12 H -0.31 -16.13 7.11 99.48 0.71 -15.43 16 13 H -0.26 -12.70 6.41 99.48 0.64 -12.06 16 14 C 0.13 5.64 4.19 86.36 0.36 6.00 16 15 C -0.13 -4.98 5.31 30.67 0.16 -4.82 16 16 C 0.17 5.53 1.57 45.02 0.07 5.60 16 17 H 0.08 2.61 7.57 -2.38 -0.02 2.59 16 18 N -0.70 -19.29 4.29 -445.58 -1.91 -21.20 16 19 C 0.60 17.09 7.78 86.69 0.67 17.76 16 20 O -0.57 -18.88 16.52 -4.02 -0.07 -18.95 16 21 C -0.12 -2.91 6.99 40.82 0.29 -2.63 16 22 C 0.11 1.77 11.27 83.85 0.95 2.72 16 23 N -0.34 -4.99 3.69 -347.10 -1.28 -6.27 16 24 C 0.15 0.82 6.82 86.38 0.59 1.41 16 25 C -0.19 -1.42 5.93 -10.79 -0.06 -1.49 16 26 C -0.18 -0.92 10.18 30.60 0.31 -0.61 16 27 C -0.15 -0.59 10.25 30.60 0.31 -0.27 16 28 N -0.08 -1.87 13.48 37.02 0.50 -1.38 16 29 N -0.22 -5.64 12.04 -49.99 -0.60 -6.24 16 30 H 0.06 1.61 6.58 -2.39 -0.02 1.60 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.04 1.67 5.97 -2.39 -0.01 1.66 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.40 7.36 -2.39 -0.02 1.38 16 36 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 2.50 7.93 -2.39 -0.02 2.48 16 38 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 39 H 0.05 2.41 4.59 -2.39 -0.01 2.39 16 40 H 0.03 1.31 6.93 -2.39 -0.02 1.29 16 41 H 0.07 2.52 6.34 -2.39 -0.02 2.51 16 42 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.41 10.42 6.35 -92.71 -0.59 9.83 16 44 H 0.24 2.06 8.06 -2.91 -0.02 2.04 16 45 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.14 -0.14 7.82 -2.38 -0.02 -0.15 16 47 H 0.09 1.23 7.94 -2.39 -0.02 1.22 16 48 H 0.11 0.25 8.03 -2.39 -0.02 0.24 16 49 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 50 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 51 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 Total: -1.00 -74.96 399.42 3.86 -71.10 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.25 Total: 16.06 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: 6.52 Total: 7.74 kcal Atomic # 7 Polarization: -120.94 SS G_CDS: -4.52 Total: -125.46 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.07 Total: -18.95 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.67 Total: 49.51 kcal Total: -74.96 3.86 -71.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941129611.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.240 kcal (2) G-P(sol) polarization free energy of solvation -74.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds