Wall clock time and date at job start Wed Apr 1 2020 04:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.49977 * 2 1 4 4 C 1.53188 * 109.50044 * 239.90007 * 2 1 3 5 5 N 1.46961 * 108.89058 * 185.49094 * 4 2 1 6 6 C 1.36934 * 120.65541 * 233.52870 * 5 4 2 7 7 H 1.07997 * 119.99959 * 151.73068 * 6 5 4 8 8 C 1.38810 * 120.00385 * 331.73976 * 6 5 4 9 9 N 1.31626 * 119.99638 * 343.17619 * 8 6 5 10 10 Si 1.86793 * 120.00463 * 163.17439 * 8 6 5 11 11 H 1.48503 * 109.47141 * 90.00030 * 10 8 6 12 12 H 1.48500 * 109.47595 * 209.99829 * 10 8 6 13 13 H 1.48503 * 109.47257 * 330.00288 * 10 8 6 14 14 C 1.46923 * 118.71459 * 53.36098 * 5 4 2 15 15 C 1.53195 * 108.89155 * 306.63745 * 14 5 4 16 16 C 1.53045 * 109.49632 * 120.06360 * 2 1 3 17 17 H 1.08993 * 109.44671 * 61.30381 * 16 2 1 18 18 N 1.46505 * 109.46000 * 301.33614 * 16 2 1 19 19 C 1.34771 * 119.99574 * 154.93429 * 18 16 2 20 20 O 1.21277 * 120.00589 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99473 * 180.02562 * 19 18 16 22 22 H 1.09001 * 109.45859 * 299.99555 * 21 19 18 23 23 C 1.53108 * 109.45814 * 180.02562 * 21 19 18 24 24 C 1.53423 * 109.57858 * 169.90337 * 23 21 19 25 25 C 1.50595 * 108.33226 * 49.81885 * 24 23 21 26 26 N 1.32910 * 129.16306 * 163.48317 * 25 24 23 27 27 N 1.29019 * 108.63669 * 180.14518 * 26 25 24 28 28 N 1.29102 * 110.25969 * 359.97093 * 27 26 25 29 29 H 0.97000 * 126.01120 * 179.91884 * 28 27 26 30 30 C 1.34401 * 107.98697 * 359.93927 * 28 27 26 31 31 C 1.50523 * 129.26407 * 180.20932 * 30 28 27 32 32 H 1.09002 * 109.46821 * 299.93689 * 1 2 3 33 33 H 1.09001 * 109.47018 * 59.93789 * 1 2 3 34 34 H 1.09003 * 109.47043 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47258 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46663 * 300.06537 * 3 2 1 37 37 H 1.09000 * 109.46778 * 60.06254 * 3 2 1 38 38 H 1.09000 * 109.58993 * 305.20260 * 4 2 1 39 39 H 1.09004 * 109.58591 * 65.62689 * 4 2 1 40 40 H 0.97000 * 119.99586 * 180.02562 * 9 8 6 41 41 H 1.09000 * 109.58739 * 186.78488 * 14 5 4 42 42 H 1.08998 * 109.58810 * 66.49535 * 14 5 4 43 43 H 1.09002 * 109.49598 * 174.51176 * 15 14 5 44 44 H 1.08996 * 109.49523 * 294.58203 * 15 14 5 45 45 H 0.96995 * 119.99383 * 334.92864 * 18 16 2 46 46 H 1.09003 * 109.45584 * 289.94110 * 23 21 19 47 47 H 1.09005 * 109.45519 * 49.87208 * 23 21 19 48 48 H 1.09001 * 109.69174 * 169.52939 * 24 23 21 49 49 H 1.08994 * 109.69245 * 290.10691 * 24 23 21 50 50 H 1.09006 * 109.67709 * 43.77009 * 31 30 28 51 51 H 1.08996 * 109.70901 * 283.19328 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0413 -0.7242 -1.2493 5 7 3.5048 -0.8325 -1.1709 6 6 4.2940 -0.3852 -2.1967 7 1 5.2969 -0.0389 -1.9950 8 6 3.8050 -0.3767 -3.4958 9 7 2.7398 -1.0864 -3.8026 10 14 4.6585 0.6419 -4.8084 11 1 5.7028 -0.1799 -5.4714 12 1 3.6626 1.0844 -5.8172 13 1 5.2889 1.8308 -4.1805 14 6 4.1053 -1.4267 0.0312 15 6 3.5709 -0.6946 1.2663 16 6 2.0408 -0.7227 1.2486 17 1 1.6967 -1.7568 1.2356 18 7 1.5265 -0.0522 2.4454 19 6 1.3972 -0.7375 3.5986 20 8 1.7061 -1.9094 3.6456 21 6 0.8676 -0.0479 4.8295 22 1 1.5220 0.7842 5.0894 23 6 0.8219 -1.0433 5.9920 24 6 0.5272 -0.2948 7.2984 25 6 -0.6686 0.5931 7.0762 26 7 -1.4522 1.1854 7.9716 27 7 -2.3621 1.8526 7.3460 28 7 -2.2115 1.7260 6.0700 29 1 -2.7693 2.1302 5.3870 30 6 -1.1462 0.9355 5.8543 31 6 -0.5456 0.4809 4.5511 32 1 -0.3633 0.5129 0.8906 33 1 -0.3633 0.5148 -0.8894 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1307 1.4418 -0.0005 36 1 1.6766 1.9566 -0.8894 37 1 1.6785 1.9559 0.8906 38 1 1.6053 -1.7220 -1.2975 39 1 1.7638 -0.1586 -2.1388 40 1 2.3983 -1.0807 -4.7105 41 1 5.1896 -1.3246 -0.0133 42 1 3.8397 -2.4823 0.0888 43 1 3.9334 -1.1891 2.1675 44 1 3.9164 0.3390 1.2543 45 1 1.2791 0.8849 2.4076 46 1 0.0379 -1.7784 5.8099 47 1 1.7831 -1.5509 6.0733 48 1 0.3108 -1.0109 8.0912 49 1 1.3888 0.3121 7.5763 50 1 -0.4935 1.3208 3.8582 51 1 -1.1568 -0.3127 4.1216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941161734.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:16 Heat of formation + Delta-G solvation = 62.074224 kcal Electronic energy + Delta-G solvation = -31944.207195 eV Core-core repulsion = 27880.344907 eV Total energy + Delta-G solvation = -4063.862289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.79168 -40.36538 -38.56201 -36.69584 -34.68447 -34.22637 -32.94239 -32.09261 -30.77709 -30.61431 -29.26886 -26.85800 -26.02016 -25.55531 -24.68178 -23.50365 -23.14076 -22.18064 -20.68937 -20.53188 -19.73129 -18.66515 -18.10493 -17.27230 -16.71192 -16.43828 -15.87033 -15.54914 -14.91388 -14.51883 -14.39667 -14.28583 -14.03503 -13.95966 -13.83560 -13.61431 -13.43095 -13.21378 -12.80309 -12.52053 -12.32267 -12.29388 -11.90325 -11.73481 -11.57147 -11.52197 -11.38727 -11.36737 -11.10703 -10.94308 -10.91217 -10.72047 -10.65654 -10.64916 -10.29517 -10.16196 -10.02714 -9.85618 -9.69783 -9.43523 -9.24973 -8.74310 -8.50001 -6.71174 -5.84231 -3.26039 1.17225 2.17738 2.27244 2.68935 3.22090 3.33254 3.40796 3.42186 3.84477 4.13176 4.33554 4.39774 4.44884 4.57633 4.74066 4.91216 4.95759 5.06348 5.12115 5.19930 5.21956 5.34626 5.35589 5.44830 5.50153 5.51713 5.65673 5.76238 5.80099 5.86820 5.87275 5.97906 6.01553 6.02738 6.15143 6.22836 6.32992 6.39705 6.43054 6.45264 6.56154 6.64439 6.77364 6.86733 6.93051 6.98373 7.25898 7.54242 7.64517 7.75610 8.09916 8.29855 8.40001 9.16251 9.79435 10.36416 11.24607 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.002409 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.354274 B =11618.707359 C =12211.390872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.097 4.097 3 C -0.127 4.127 4 C 0.186 3.814 5 N -0.589 5.589 6 C -0.250 4.250 7 H 0.065 0.935 8 C 0.004 3.996 9 N -0.902 5.902 10 Si 0.899 3.101 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.280 1.280 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.163 3.837 17 H 0.081 0.919 18 N -0.719 5.719 19 C 0.515 3.485 20 O -0.535 6.535 21 C -0.103 4.103 22 H 0.103 0.897 23 C -0.100 4.100 24 C -0.035 4.035 25 C -0.014 4.014 26 N -0.258 5.258 27 N -0.090 5.090 28 N -0.382 5.382 29 H 0.449 0.551 30 C -0.010 4.010 31 C -0.038 4.038 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.028 0.972 38 H 0.019 0.981 39 H 0.092 0.908 40 H 0.254 0.746 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.394 0.606 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.088 0.912 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.102 5.680 16.798 19.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 C -0.184 4.184 4 C 0.060 3.940 5 N -0.311 5.311 6 C -0.380 4.380 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.547 5.547 10 Si 0.729 3.271 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.183 4.183 16 C 0.059 3.941 17 H 0.099 0.901 18 N -0.370 5.370 19 C 0.300 3.700 20 O -0.411 6.411 21 C -0.125 4.125 22 H 0.121 0.879 23 C -0.139 4.139 24 C -0.074 4.074 25 C -0.154 4.154 26 N -0.124 5.124 27 N -0.069 5.069 28 N -0.101 5.101 29 H 0.294 0.706 30 C -0.146 4.146 31 C -0.078 4.078 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.037 0.963 39 H 0.110 0.890 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.229 0.771 46 H 0.093 0.907 47 H 0.109 0.891 48 H 0.108 0.892 49 H 0.104 0.896 50 H 0.107 0.893 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -8.730 5.407 17.895 20.632 hybrid contribution 0.334 0.925 -2.114 2.332 sum -8.397 6.332 15.781 18.964 Atomic orbital electron populations 1.21758 0.95486 1.01312 1.00544 1.21565 0.94382 0.96778 0.97230 1.21745 1.02682 0.94691 0.99275 1.20822 0.83174 0.96743 0.93302 1.44035 1.01630 1.69427 1.16024 1.19134 0.97873 1.35309 0.85652 0.91749 1.25028 0.98476 0.99013 0.96987 1.70022 1.25544 1.40325 1.18777 0.86348 0.78720 0.80342 0.81666 1.21404 1.21613 1.20525 1.20874 0.96669 0.94316 0.86176 1.22439 0.94802 1.01554 0.99461 1.21018 0.93859 0.96780 0.82402 0.90056 1.46390 1.65693 1.14341 1.10550 1.20296 0.78330 0.87169 0.84227 1.90722 1.49893 1.16034 1.84458 1.21383 0.96003 1.00191 0.94918 0.87853 1.21478 1.04431 0.96823 0.91125 1.20038 0.92381 0.96277 0.98674 1.21809 1.01249 1.03730 0.88620 1.74837 1.02133 1.08318 1.27143 1.78583 1.20164 1.20641 0.87532 1.44704 1.22243 1.34449 1.08688 0.70575 1.21797 0.93168 1.00309 0.99318 1.20139 0.95085 1.01581 0.90973 0.93999 0.92614 0.93038 0.91061 0.92950 0.95289 0.96272 0.88963 0.93631 0.92615 0.96269 0.92741 0.91881 0.77088 0.90652 0.89137 0.89208 0.89606 0.89314 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.31 37.16 0.31 -1.52 16 2 C -0.10 -1.57 0.56 -154.39 -0.09 -1.65 16 3 C -0.13 -1.93 7.83 37.16 0.29 -1.64 16 4 C 0.19 4.05 3.98 -3.69 -0.01 4.03 16 5 N -0.59 -13.72 2.45 -172.30 -0.42 -14.14 16 6 C -0.25 -6.48 9.58 -15.06 -0.14 -6.62 16 7 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 8 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 9 N -0.90 -25.08 11.20 55.49 0.62 -24.45 16 10 Si 0.90 20.87 29.59 -169.99 -5.03 15.84 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 14 C 0.15 2.97 6.51 -3.71 -0.02 2.94 16 15 C -0.14 -2.38 5.31 -26.61 -0.14 -2.52 16 16 C 0.16 2.51 1.57 -67.88 -0.11 2.40 16 17 H 0.08 1.47 7.57 -51.93 -0.39 1.07 16 18 N -0.72 -8.29 4.19 -53.76 -0.23 -8.51 16 19 C 0.51 6.02 7.10 -10.99 -0.08 5.94 16 20 O -0.53 -8.48 15.47 5.56 0.09 -8.40 16 21 C -0.10 -0.82 2.50 -91.49 -0.23 -1.05 16 22 H 0.10 0.70 8.12 -51.93 -0.42 0.27 16 23 C -0.10 -0.83 4.64 -26.46 -0.12 -0.95 16 24 C -0.03 -0.27 6.30 -27.71 -0.17 -0.44 16 25 C -0.01 -0.14 7.11 -83.12 -0.59 -0.73 16 26 N -0.26 -3.13 12.40 33.16 0.41 -2.72 16 27 N -0.09 -0.99 13.40 60.35 0.81 -0.18 16 28 N -0.38 -2.83 6.97 33.39 0.23 -2.60 16 29 H 0.45 1.58 8.96 -190.08 -1.70 -0.12 16 30 C -0.01 -0.08 7.15 -82.50 -0.59 -0.67 16 31 C -0.04 -0.24 5.43 -27.75 -0.15 -0.39 16 32 H 0.04 0.45 7.36 -51.93 -0.38 0.07 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.25 5.98 -51.93 -0.31 0.94 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.03 0.34 6.58 -51.93 -0.34 0.00 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 40 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.04 6.34 -51.93 -0.33 0.71 16 45 H 0.39 3.63 6.33 -40.82 -0.26 3.37 16 46 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 47 H 0.09 0.80 7.76 -51.93 -0.40 0.40 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.09 0.39 7.90 -51.93 -0.41 -0.02 16 51 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 LS Contribution 390.24 15.07 5.88 5.88 Total: -1.00 -32.29 390.24 -9.03 -41.31 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -9.45 Total: 0.83 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.94 Total: -2.86 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 1.43 Total: -52.61 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.29 -9.03 -41.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941161734.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.389 kcal (2) G-P(sol) polarization free energy of solvation -32.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds