Wall clock time and date at job start Wed Apr 1 2020 04:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.49977 * 2 1 4 4 C 1.53188 * 109.50044 * 239.90007 * 2 1 3 5 5 N 1.46961 * 108.89058 * 185.49094 * 4 2 1 6 6 C 1.36934 * 120.65541 * 233.52870 * 5 4 2 7 7 H 1.07997 * 119.99959 * 151.73068 * 6 5 4 8 8 C 1.38810 * 120.00385 * 331.73976 * 6 5 4 9 9 N 1.31626 * 119.99638 * 343.17619 * 8 6 5 10 10 Si 1.86793 * 120.00463 * 163.17439 * 8 6 5 11 11 H 1.48503 * 109.47141 * 90.00030 * 10 8 6 12 12 H 1.48500 * 109.47595 * 209.99829 * 10 8 6 13 13 H 1.48503 * 109.47257 * 330.00288 * 10 8 6 14 14 C 1.46923 * 118.71459 * 53.36098 * 5 4 2 15 15 C 1.53195 * 108.89155 * 306.63745 * 14 5 4 16 16 C 1.53045 * 109.49632 * 120.06360 * 2 1 3 17 17 H 1.08993 * 109.44671 * 61.30381 * 16 2 1 18 18 N 1.46505 * 109.46000 * 301.33614 * 16 2 1 19 19 C 1.34771 * 119.99574 * 154.93429 * 18 16 2 20 20 O 1.21277 * 120.00589 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99473 * 180.02562 * 19 18 16 22 22 H 1.09001 * 109.45859 * 299.99555 * 21 19 18 23 23 C 1.53108 * 109.45814 * 180.02562 * 21 19 18 24 24 C 1.53423 * 109.57858 * 169.90337 * 23 21 19 25 25 C 1.50595 * 108.33226 * 49.81885 * 24 23 21 26 26 N 1.32910 * 129.16306 * 163.48317 * 25 24 23 27 27 N 1.29019 * 108.63669 * 180.14518 * 26 25 24 28 28 N 1.29102 * 110.25969 * 359.97093 * 27 26 25 29 29 H 0.97000 * 126.01120 * 179.91884 * 28 27 26 30 30 C 1.34401 * 107.98697 * 359.93927 * 28 27 26 31 31 C 1.50523 * 129.26407 * 180.20932 * 30 28 27 32 32 H 1.09002 * 109.46821 * 299.93689 * 1 2 3 33 33 H 1.09001 * 109.47018 * 59.93789 * 1 2 3 34 34 H 1.09003 * 109.47043 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47258 * 180.02562 * 3 2 1 36 36 H 1.09001 * 109.46663 * 300.06537 * 3 2 1 37 37 H 1.09000 * 109.46778 * 60.06254 * 3 2 1 38 38 H 1.09000 * 109.58993 * 305.20260 * 4 2 1 39 39 H 1.09004 * 109.58591 * 65.62689 * 4 2 1 40 40 H 0.97000 * 119.99586 * 180.02562 * 9 8 6 41 41 H 1.09000 * 109.58739 * 186.78488 * 14 5 4 42 42 H 1.08998 * 109.58810 * 66.49535 * 14 5 4 43 43 H 1.09002 * 109.49598 * 174.51176 * 15 14 5 44 44 H 1.08996 * 109.49523 * 294.58203 * 15 14 5 45 45 H 0.96995 * 119.99383 * 334.92864 * 18 16 2 46 46 H 1.09003 * 109.45584 * 289.94110 * 23 21 19 47 47 H 1.09005 * 109.45519 * 49.87208 * 23 21 19 48 48 H 1.09001 * 109.69174 * 169.52939 * 24 23 21 49 49 H 1.08994 * 109.69245 * 290.10691 * 24 23 21 50 50 H 1.09006 * 109.67709 * 43.77009 * 31 30 28 51 51 H 1.08996 * 109.70901 * 283.19328 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0413 -0.7242 -1.2493 5 7 3.5048 -0.8325 -1.1709 6 6 4.2940 -0.3852 -2.1967 7 1 5.2969 -0.0389 -1.9950 8 6 3.8050 -0.3767 -3.4958 9 7 2.7398 -1.0864 -3.8026 10 14 4.6585 0.6419 -4.8084 11 1 5.7028 -0.1799 -5.4714 12 1 3.6626 1.0844 -5.8172 13 1 5.2889 1.8308 -4.1805 14 6 4.1053 -1.4267 0.0312 15 6 3.5709 -0.6946 1.2663 16 6 2.0408 -0.7227 1.2486 17 1 1.6967 -1.7568 1.2356 18 7 1.5265 -0.0522 2.4454 19 6 1.3972 -0.7375 3.5986 20 8 1.7061 -1.9094 3.6456 21 6 0.8676 -0.0479 4.8295 22 1 1.5220 0.7842 5.0894 23 6 0.8219 -1.0433 5.9920 24 6 0.5272 -0.2948 7.2984 25 6 -0.6686 0.5931 7.0762 26 7 -1.4522 1.1854 7.9716 27 7 -2.3621 1.8526 7.3460 28 7 -2.2115 1.7260 6.0700 29 1 -2.7693 2.1302 5.3870 30 6 -1.1462 0.9355 5.8543 31 6 -0.5456 0.4809 4.5511 32 1 -0.3633 0.5129 0.8906 33 1 -0.3633 0.5148 -0.8894 34 1 -0.3633 -1.0277 -0.0005 35 1 3.1307 1.4418 -0.0005 36 1 1.6766 1.9566 -0.8894 37 1 1.6785 1.9559 0.8906 38 1 1.6053 -1.7220 -1.2975 39 1 1.7638 -0.1586 -2.1388 40 1 2.3983 -1.0807 -4.7105 41 1 5.1896 -1.3246 -0.0133 42 1 3.8397 -2.4823 0.0888 43 1 3.9334 -1.1891 2.1675 44 1 3.9164 0.3390 1.2543 45 1 1.2791 0.8849 2.4076 46 1 0.0379 -1.7784 5.8099 47 1 1.7831 -1.5509 6.0733 48 1 0.3108 -1.0109 8.0912 49 1 1.3888 0.3121 7.5763 50 1 -0.4935 1.3208 3.8582 51 1 -1.1568 -0.3127 4.1216 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941161734.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:15 Heat of formation + Delta-G solvation = 40.587570 kcal Electronic energy + Delta-G solvation = -31945.138927 eV Core-core repulsion = 27880.344907 eV Total energy + Delta-G solvation = -4064.794020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -44.45607 -41.44929 -39.80913 -37.51264 -36.22389 -34.92557 -34.19918 -33.79654 -31.77080 -31.25500 -30.66317 -28.08642 -27.56466 -26.94395 -25.63946 -24.45035 -23.86924 -23.42482 -22.25255 -21.50923 -20.52590 -19.61271 -19.16499 -18.72624 -17.86694 -17.25778 -16.95933 -16.72947 -16.41951 -15.70610 -15.45816 -15.35516 -15.07920 -15.02540 -14.91386 -14.68549 -14.65627 -14.43630 -14.15032 -13.78334 -13.24726 -13.11875 -13.04765 -12.99522 -12.84234 -12.66103 -12.61045 -12.55510 -12.40204 -12.28733 -12.17941 -12.03053 -11.90159 -11.78366 -11.58077 -11.56061 -11.30595 -11.26561 -11.11824 -10.67712 -10.51248 -9.90127 -9.87593 -8.64097 -7.84847 -5.29321 0.54449 1.46548 1.47629 1.49730 1.58531 1.62466 1.90488 2.25545 2.53079 3.22915 3.30744 3.49567 3.67977 3.72336 3.78131 3.82409 3.97274 4.02560 4.06016 4.17355 4.29720 4.40625 4.41062 4.50054 4.52011 4.58372 4.65843 4.71956 4.81243 4.87449 4.89907 4.93369 5.01548 5.02707 5.04871 5.08581 5.15370 5.17498 5.25715 5.31316 5.37304 5.38661 5.41093 5.49894 5.63966 5.66022 5.75074 5.80603 5.99742 6.42106 6.69939 7.18276 7.38578 7.41070 7.88493 8.41001 9.21682 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024042 B = 0.002409 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.354274 B =11618.707359 C =12211.390872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.121 4.121 4 C 0.193 3.807 5 N -0.603 5.603 6 C -0.255 4.255 7 H 0.065 0.935 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.961 3.039 11 H -0.290 1.290 12 H -0.293 1.293 13 H -0.269 1.269 14 C 0.142 3.858 15 C -0.128 4.128 16 C 0.177 3.823 17 H 0.053 0.947 18 N -0.705 5.705 19 C 0.519 3.481 20 O -0.578 6.578 21 C -0.092 4.092 22 H 0.128 0.872 23 C -0.096 4.096 24 C -0.028 4.028 25 C -0.032 4.032 26 N -0.295 5.295 27 N -0.118 5.118 28 N -0.363 5.363 29 H 0.465 0.535 30 C 0.004 3.996 31 C -0.034 4.034 32 H 0.084 0.916 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.076 0.924 38 H -0.017 1.017 39 H 0.061 0.939 40 H 0.249 0.751 41 H 0.054 0.946 42 H 0.002 0.998 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.412 0.588 46 H 0.064 0.936 47 H 0.082 0.918 48 H 0.090 0.910 49 H 0.098 0.902 50 H 0.123 0.877 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.521 8.154 18.062 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.088 4.088 3 C -0.178 4.178 4 C 0.067 3.933 5 N -0.326 5.326 6 C -0.385 4.385 7 H 0.083 0.917 8 C -0.243 4.243 9 N -0.581 5.581 10 Si 0.790 3.210 11 H -0.217 1.217 12 H -0.220 1.220 13 H -0.193 1.193 14 C 0.016 3.984 15 C -0.168 4.168 16 C 0.071 3.929 17 H 0.071 0.929 18 N -0.357 5.357 19 C 0.306 3.694 20 O -0.457 6.457 21 C -0.114 4.114 22 H 0.146 0.854 23 C -0.135 4.135 24 C -0.067 4.067 25 C -0.172 4.172 26 N -0.160 5.160 27 N -0.096 5.096 28 N -0.085 5.085 29 H 0.315 0.685 30 C -0.133 4.133 31 C -0.073 4.073 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.001 0.999 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.020 0.980 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.250 0.750 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.108 0.892 49 H 0.116 0.884 50 H 0.141 0.859 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -9.178 7.934 19.195 22.707 hybrid contribution 0.502 0.043 -2.506 2.557 sum -8.675 7.977 16.688 20.430 Atomic orbital electron populations 1.21729 0.93166 1.01290 1.02456 1.21315 0.96146 0.96842 0.94542 1.21675 1.01214 0.93789 1.01104 1.20631 0.82457 0.95031 0.95161 1.44261 1.02194 1.69776 1.16341 1.19433 0.98148 1.34431 0.86470 0.91717 1.25720 0.99403 1.00286 0.98877 1.70184 1.27143 1.42013 1.18759 0.85372 0.77443 0.79098 0.79097 1.21679 1.21970 1.19341 1.20968 0.96746 0.93796 0.86879 1.22239 0.95726 1.01459 0.97366 1.20533 0.92905 0.95662 0.83763 0.92885 1.46076 1.65400 1.14990 1.09213 1.20879 0.77145 0.86552 0.84782 1.90725 1.51628 1.18247 1.85090 1.21327 0.97422 1.00273 0.92342 0.85444 1.21404 1.03615 0.96773 0.91660 1.20022 0.92268 0.96140 0.98307 1.22176 1.01799 1.04133 0.89130 1.74797 1.03131 1.09518 1.28544 1.78517 1.20629 1.21615 0.88878 1.44706 1.21991 1.33575 1.08222 0.68540 1.21933 0.92705 0.99365 0.99313 1.20215 0.93623 1.02850 0.90639 0.89766 0.92955 0.94135 0.93285 0.94023 0.90532 0.99871 0.92106 0.94209 0.92722 0.98039 0.92182 0.90781 0.74991 0.91748 0.89939 0.89185 0.88365 0.85931 0.88330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.31 71.98 0.60 -2.63 16 2 C -0.09 -2.67 0.56 -52.10 -0.03 -2.70 16 3 C -0.12 -3.34 7.83 71.98 0.56 -2.77 16 4 C 0.19 8.68 3.98 86.35 0.34 9.02 16 5 N -0.60 -28.79 2.45 -699.02 -1.71 -30.50 16 6 C -0.25 -13.42 9.58 84.03 0.81 -12.61 16 7 H 0.07 3.34 7.88 -2.91 -0.02 3.32 16 8 C -0.05 -2.57 4.92 84.86 0.42 -2.15 16 9 N -0.93 -53.79 11.20 21.65 0.24 -53.55 16 10 Si 0.96 43.46 29.59 68.60 2.03 45.49 16 11 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 12 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 13 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 14 C 0.14 5.87 6.51 86.36 0.56 6.43 16 15 C -0.13 -4.12 5.31 30.68 0.16 -3.96 16 16 C 0.18 5.17 1.57 45.02 0.07 5.24 16 17 H 0.05 1.91 7.57 -2.39 -0.02 1.89 16 18 N -0.70 -13.57 4.19 -442.39 -1.85 -15.42 16 19 C 0.52 10.51 7.10 87.66 0.62 11.13 16 20 O -0.58 -17.51 15.47 -3.02 -0.05 -17.56 16 21 C -0.09 -1.10 2.50 -11.36 -0.03 -1.13 16 22 H 0.13 1.04 8.12 -2.39 -0.02 1.02 16 23 C -0.10 -1.37 4.64 30.77 0.14 -1.23 16 24 C -0.03 -0.38 6.30 29.96 0.19 -0.19 16 25 C -0.03 -0.55 7.11 41.75 0.30 -0.25 16 26 N -0.29 -6.76 12.40 -48.99 -0.61 -7.37 16 27 N -0.12 -2.39 13.40 37.02 0.50 -1.89 16 28 N -0.36 -4.30 6.97 -48.28 -0.34 -4.64 16 29 H 0.47 1.64 8.96 -219.68 -1.97 -0.32 16 30 C 0.00 0.05 7.15 41.50 0.30 0.34 16 31 C -0.03 -0.27 5.43 29.94 0.16 -0.11 16 32 H 0.08 1.40 7.36 -2.39 -0.02 1.38 16 33 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.60 5.98 -2.39 -0.01 1.58 16 36 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.38 6.58 -2.39 -0.02 1.36 16 38 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 39 H 0.06 3.11 6.07 -2.38 -0.01 3.10 16 40 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 42 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 44 H 0.07 2.26 6.34 -2.39 -0.02 2.24 16 45 H 0.41 5.15 6.33 -92.71 -0.59 4.56 16 46 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 47 H 0.08 1.33 7.76 -2.38 -0.02 1.32 16 48 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.12 0.23 7.90 -2.38 -0.02 0.21 16 51 H 0.10 0.84 8.12 -2.39 -0.02 0.82 16 Total: -1.00 -74.84 390.24 1.79 -73.05 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -1.59 Total: 9.94 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: 5.18 Total: 2.45 kcal Atomic # 7 Polarization: -109.60 SS G_CDS: -3.77 Total: -113.37 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.05 Total: -17.56 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -74.84 1.79 -73.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941161734.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.637 kcal (2) G-P(sol) polarization free energy of solvation -74.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds