Wall clock time and date at job start Wed Apr 1 2020 04:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.49912 * 2 1 4 4 C 1.53191 * 109.49847 * 239.90148 * 2 1 3 5 5 N 1.46924 * 108.77685 * 294.68493 * 4 2 1 6 6 C 1.36932 * 120.63385 * 126.36739 * 5 4 2 7 7 H 1.07998 * 120.00537 * 207.69567 * 6 5 4 8 8 C 1.38813 * 119.99744 * 27.68812 * 6 5 4 9 9 N 1.31622 * 120.00107 * 17.36917 * 8 6 5 10 10 Si 1.86800 * 120.00238 * 197.35909 * 8 6 5 11 11 H 1.48506 * 109.46909 * 90.00235 * 10 8 6 12 12 H 1.48501 * 109.47369 * 210.00652 * 10 8 6 13 13 H 1.48502 * 109.47235 * 330.00632 * 10 8 6 14 14 C 1.46932 * 118.73866 * 306.39613 * 5 4 2 15 15 C 1.53184 * 108.77700 * 53.60442 * 14 5 4 16 16 C 1.53041 * 109.49399 * 120.06303 * 2 1 3 17 17 H 1.09000 * 109.45739 * 178.59091 * 16 2 1 18 18 N 1.46496 * 109.46232 * 298.56454 * 16 2 1 19 19 C 1.34775 * 120.00236 * 205.00445 * 18 16 2 20 20 O 1.21283 * 120.00130 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99951 * 180.02562 * 19 18 16 22 22 H 1.08992 * 109.46458 * 59.96260 * 21 19 18 23 23 C 1.53112 * 109.45565 * 179.91367 * 21 19 18 24 24 C 1.53427 * 109.57890 * 190.08014 * 23 21 19 25 25 C 1.50595 * 108.33303 * 310.16786 * 24 23 21 26 26 N 1.32912 * 129.16536 * 196.57084 * 25 24 23 27 27 N 1.29018 * 108.63315 * 179.85807 * 26 25 24 28 28 N 1.29109 * 110.26171 * 0.03007 * 27 26 25 29 29 H 0.96997 * 126.00486 * 180.02562 * 28 27 26 30 30 C 1.34396 * 107.98562 * 0.06557 * 28 27 26 31 31 C 1.50528 * 129.25267 * 179.86594 * 30 28 27 32 32 H 1.08999 * 109.47171 * 299.93800 * 1 2 3 33 33 H 1.09010 * 109.46925 * 59.93442 * 1 2 3 34 34 H 1.08995 * 109.47455 * 179.97438 * 1 2 3 35 35 H 1.08990 * 109.46758 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46567 * 300.06546 * 3 2 1 37 37 H 1.09003 * 109.46834 * 60.05860 * 3 2 1 38 38 H 1.08999 * 109.59012 * 54.47049 * 4 2 1 39 39 H 1.09003 * 109.58387 * 174.89785 * 4 2 1 40 40 H 0.96993 * 119.99996 * 179.97438 * 9 8 6 41 41 H 1.08995 * 109.58444 * 173.39343 * 14 5 4 42 42 H 1.09000 * 109.58234 * 293.67386 * 14 5 4 43 43 H 1.09001 * 109.49681 * 185.41548 * 15 14 5 44 44 H 1.08999 * 109.49966 * 65.32102 * 15 14 5 45 45 H 0.97001 * 120.00057 * 25.00200 * 18 16 2 46 46 H 1.09004 * 109.44872 * 310.10734 * 23 21 19 47 47 H 1.08993 * 109.45808 * 70.06698 * 23 21 19 48 48 H 1.08994 * 109.69339 * 69.88397 * 24 23 21 49 49 H 1.09002 * 109.68512 * 190.46120 * 24 23 21 50 50 H 1.08999 * 109.69725 * 76.75503 * 31 30 28 51 51 H 1.09001 * 109.69587 * 316.16582 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0413 -0.7242 -1.2493 5 7 1.6515 -2.1385 -1.1690 6 6 0.9632 -2.7318 -2.1932 7 1 0.3071 -3.5656 -1.9913 8 6 1.1084 -2.2615 -3.4911 9 7 2.1332 -1.4968 -3.8032 10 14 -0.1505 -2.7139 -4.7950 11 1 -1.2325 -1.6970 -4.8123 12 1 0.5085 -2.7584 -6.1250 13 1 -0.7282 -4.0462 -4.4841 14 6 2.0139 -2.9040 0.0317 15 6 1.5029 -2.1554 1.2666 16 6 2.0407 -0.7227 1.2486 17 1 3.1304 -0.7443 1.2354 18 7 1.5810 -0.0137 2.4453 19 6 2.2697 -0.1216 3.5988 20 8 3.2697 -0.8061 3.6462 21 6 1.7964 0.6073 4.8299 22 1 0.7931 0.2693 5.0889 23 6 2.7486 0.3156 5.9929 24 6 2.1413 0.8432 7.2993 25 6 1.7063 2.2679 7.0781 26 7 1.4115 3.2043 7.9740 27 7 1.0884 4.2857 7.3489 28 7 1.1569 4.1020 6.0728 29 1 0.9627 4.7633 5.3903 30 6 1.5439 2.8333 5.8564 31 6 1.7717 2.1162 4.5526 32 1 -0.3633 0.5129 0.8905 33 1 -0.3633 0.5149 -0.8895 34 1 -0.3634 -1.0276 -0.0005 35 1 3.1306 1.4417 -0.0005 36 1 1.6766 1.9566 -0.8894 37 1 1.6785 1.9560 0.8905 38 1 1.6008 -0.2738 -2.1388 39 1 3.1275 -0.6467 -1.2977 40 1 2.2349 -1.1684 -4.7102 41 1 1.5553 -3.8918 -0.0126 42 1 3.0977 -3.0065 0.0864 43 1 1.8479 -2.6622 2.1679 44 1 0.4132 -2.1351 1.2547 45 1 0.7810 0.5335 2.4075 46 1 2.9042 -0.7603 6.0735 47 1 3.7040 0.8081 5.8122 48 1 1.2802 0.2350 7.5760 49 1 2.8879 0.8061 8.0926 50 1 2.7247 2.4266 4.1242 51 1 0.9635 2.3490 3.8593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941161735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:21 Heat of formation + Delta-G solvation = 62.189786 kcal Electronic energy + Delta-G solvation = -31948.074176 eV Core-core repulsion = 27884.216898 eV Total energy + Delta-G solvation = -4063.857277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.79138 -40.36590 -38.56586 -36.69591 -34.68830 -34.22705 -32.94070 -32.09682 -30.77750 -30.61413 -29.26845 -26.85648 -26.02293 -25.55687 -24.68285 -23.50410 -23.14111 -22.18042 -20.69033 -20.53232 -19.73112 -18.66560 -18.10551 -17.27257 -16.71343 -16.43926 -15.87073 -15.54923 -14.91953 -14.51877 -14.39689 -14.28620 -14.03393 -13.96033 -13.83576 -13.61453 -13.42996 -13.21650 -12.80457 -12.52194 -12.32239 -12.29401 -11.90336 -11.73433 -11.57249 -11.52219 -11.38574 -11.36519 -11.11187 -10.94946 -10.91388 -10.74191 -10.65667 -10.63173 -10.28809 -10.15456 -10.02424 -9.85353 -9.69665 -9.43630 -9.24987 -8.74361 -8.49974 -6.72665 -5.84205 -3.25811 1.17213 2.17713 2.27263 2.68863 3.22051 3.33471 3.41146 3.41893 3.84482 4.13102 4.33531 4.39751 4.44811 4.57586 4.74050 4.91210 4.95729 5.06343 5.12191 5.19880 5.21757 5.34568 5.35475 5.44774 5.50217 5.51556 5.65653 5.76207 5.80162 5.86915 5.87297 5.97960 6.01504 6.02683 6.15097 6.22977 6.33030 6.39742 6.42998 6.45254 6.56277 6.64462 6.77238 6.86745 6.93007 6.98359 7.25802 7.54314 7.64492 7.75717 8.09885 8.29816 8.39586 9.16074 9.79272 10.35930 11.24460 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023968 B = 0.002412 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.922910 B =11604.872048 C =12198.361040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C -0.133 4.133 4 C 0.186 3.814 5 N -0.589 5.589 6 C -0.250 4.250 7 H 0.066 0.934 8 C 0.003 3.997 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.279 1.279 14 C 0.146 3.854 15 C -0.142 4.142 16 C 0.163 3.837 17 H 0.081 0.919 18 N -0.719 5.719 19 C 0.515 3.485 20 O -0.535 6.535 21 C -0.103 4.103 22 H 0.103 0.897 23 C -0.100 4.100 24 C -0.035 4.035 25 C -0.014 4.014 26 N -0.258 5.258 27 N -0.090 5.090 28 N -0.382 5.382 29 H 0.449 0.551 30 C -0.010 4.010 31 C -0.038 4.038 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.041 0.959 38 H 0.093 0.907 39 H 0.019 0.981 40 H 0.254 0.746 41 H 0.055 0.945 42 H 0.020 0.980 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.394 0.606 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.095 0.905 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 9.483 16.818 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.100 4.100 3 C -0.191 4.191 4 C 0.059 3.941 5 N -0.311 5.311 6 C -0.379 4.379 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.547 5.547 10 Si 0.730 3.270 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.182 4.182 16 C 0.059 3.941 17 H 0.099 0.901 18 N -0.370 5.370 19 C 0.300 3.700 20 O -0.411 6.411 21 C -0.125 4.125 22 H 0.121 0.879 23 C -0.139 4.139 24 C -0.074 4.074 25 C -0.154 4.154 26 N -0.124 5.124 27 N -0.069 5.069 28 N -0.101 5.101 29 H 0.294 0.706 30 C -0.146 4.146 31 C -0.078 4.078 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.037 0.963 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.229 0.771 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.108 0.892 50 H 0.113 0.887 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.108 9.969 17.915 20.610 hybrid contribution -1.005 0.020 -2.104 2.332 sum -3.113 9.990 15.811 18.959 Atomic orbital electron populations 1.21745 0.94750 1.02629 0.99267 1.21567 0.96264 0.94895 0.97232 1.21757 1.00800 0.95999 1.00544 1.20826 0.96337 0.83567 0.93351 1.44050 1.65174 1.05670 1.16233 1.19169 1.17918 1.15077 0.85783 0.91653 1.25017 0.96996 1.00584 0.96937 1.70022 1.27317 1.38515 1.18814 0.86324 0.81148 0.78243 0.81273 1.21504 1.21803 1.20455 1.20878 0.96684 0.94295 0.86191 1.22435 1.00994 0.95362 0.99448 1.21015 0.99273 0.91365 0.82407 0.90069 1.46389 1.29556 1.50480 1.10543 1.20298 0.83802 0.81697 0.84229 1.90723 1.25425 1.40490 1.84472 1.21383 1.02530 0.93671 0.94912 0.87851 1.21478 0.98067 1.03189 0.91117 1.20039 1.01373 0.87284 0.98680 1.21808 1.06285 0.98703 0.88617 1.74838 1.14018 0.96427 1.27141 1.78583 1.20908 1.19892 0.87540 1.44704 1.45755 1.10945 1.08683 0.70576 1.21797 1.07081 0.86391 0.99318 1.20141 1.03941 0.92733 0.90965 0.95299 0.92958 0.91049 0.93041 0.92617 0.94003 0.88891 0.96284 0.93621 0.92603 0.96239 0.92745 0.91869 0.77088 0.89134 0.90656 0.89606 0.89208 0.88687 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 7.83 37.16 0.29 -1.65 16 2 C -0.10 -1.57 0.56 -154.39 -0.09 -1.65 16 3 C -0.13 -1.83 8.31 37.16 0.31 -1.52 16 4 C 0.19 4.04 3.99 -3.71 -0.01 4.02 16 5 N -0.59 -13.71 2.43 -172.32 -0.42 -14.12 16 6 C -0.25 -6.47 9.59 -15.06 -0.14 -6.61 16 7 H 0.07 1.68 7.89 -52.49 -0.41 1.27 16 8 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 9 N -0.90 -25.07 11.19 55.49 0.62 -24.44 16 10 Si 0.90 20.89 29.59 -169.99 -5.03 15.86 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 14 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16 15 C -0.14 -2.37 5.31 -26.61 -0.14 -2.51 16 16 C 0.16 2.51 1.57 -67.89 -0.11 2.40 16 17 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 18 N -0.72 -8.29 4.19 -53.77 -0.23 -8.51 16 19 C 0.51 6.01 7.10 -10.99 -0.08 5.94 16 20 O -0.53 -8.48 15.47 5.56 0.09 -8.40 16 21 C -0.10 -0.82 2.50 -91.49 -0.23 -1.05 16 22 H 0.10 0.70 8.12 -51.93 -0.42 0.27 16 23 C -0.10 -0.82 4.64 -26.45 -0.12 -0.95 16 24 C -0.03 -0.27 6.30 -27.71 -0.17 -0.44 16 25 C -0.01 -0.14 7.11 -83.12 -0.59 -0.73 16 26 N -0.26 -3.13 12.40 33.16 0.41 -2.72 16 27 N -0.09 -0.99 13.40 60.35 0.81 -0.18 16 28 N -0.38 -2.84 6.97 33.39 0.23 -2.60 16 29 H 0.45 1.58 8.96 -190.08 -1.70 -0.12 16 30 C -0.01 -0.08 7.15 -82.50 -0.59 -0.67 16 31 C -0.04 -0.24 5.43 -27.74 -0.15 -0.39 16 32 H 0.03 0.34 6.58 -51.93 -0.34 0.00 16 33 H 0.05 0.85 8.14 -51.92 -0.42 0.42 16 34 H 0.07 1.25 5.97 -51.93 -0.31 0.94 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.45 7.36 -51.93 -0.38 0.07 16 38 H 0.09 2.29 6.03 -51.93 -0.31 1.98 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 1.04 6.33 -51.93 -0.33 0.71 16 45 H 0.39 3.63 6.33 -40.82 -0.26 3.37 16 46 H 0.09 0.80 7.76 -51.93 -0.40 0.40 16 47 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 48 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.09 0.62 8.12 -51.93 -0.42 0.20 16 51 H 0.09 0.39 7.90 -51.93 -0.41 -0.02 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -32.25 390.18 -9.03 -41.27 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -9.45 Total: 0.84 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.94 Total: -2.87 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 1.43 Total: -52.59 kcal Atomic # 8 Polarization: -8.48 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.25 -9.03 -41.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941161735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.462 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds