Wall clock time and date at job start Wed Apr 1 2020 04:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.49912 * 2 1 4 4 C 1.53191 * 109.49847 * 239.90148 * 2 1 3 5 5 N 1.46924 * 108.77685 * 294.68493 * 4 2 1 6 6 C 1.36932 * 120.63385 * 126.36739 * 5 4 2 7 7 H 1.07998 * 120.00537 * 207.69567 * 6 5 4 8 8 C 1.38813 * 119.99744 * 27.68812 * 6 5 4 9 9 N 1.31622 * 120.00107 * 17.36917 * 8 6 5 10 10 Si 1.86800 * 120.00238 * 197.35909 * 8 6 5 11 11 H 1.48506 * 109.46909 * 90.00235 * 10 8 6 12 12 H 1.48501 * 109.47369 * 210.00652 * 10 8 6 13 13 H 1.48502 * 109.47235 * 330.00632 * 10 8 6 14 14 C 1.46932 * 118.73866 * 306.39613 * 5 4 2 15 15 C 1.53184 * 108.77700 * 53.60442 * 14 5 4 16 16 C 1.53041 * 109.49399 * 120.06303 * 2 1 3 17 17 H 1.09000 * 109.45739 * 178.59091 * 16 2 1 18 18 N 1.46496 * 109.46232 * 298.56454 * 16 2 1 19 19 C 1.34775 * 120.00236 * 205.00445 * 18 16 2 20 20 O 1.21283 * 120.00130 * 359.97438 * 19 18 16 21 21 C 1.50698 * 119.99951 * 180.02562 * 19 18 16 22 22 H 1.08992 * 109.46458 * 59.96260 * 21 19 18 23 23 C 1.53112 * 109.45565 * 179.91367 * 21 19 18 24 24 C 1.53427 * 109.57890 * 190.08014 * 23 21 19 25 25 C 1.50595 * 108.33303 * 310.16786 * 24 23 21 26 26 N 1.32912 * 129.16536 * 196.57084 * 25 24 23 27 27 N 1.29018 * 108.63315 * 179.85807 * 26 25 24 28 28 N 1.29109 * 110.26171 * 0.03007 * 27 26 25 29 29 H 0.96997 * 126.00486 * 180.02562 * 28 27 26 30 30 C 1.34396 * 107.98562 * 0.06557 * 28 27 26 31 31 C 1.50528 * 129.25267 * 179.86594 * 30 28 27 32 32 H 1.08999 * 109.47171 * 299.93800 * 1 2 3 33 33 H 1.09010 * 109.46925 * 59.93442 * 1 2 3 34 34 H 1.08995 * 109.47455 * 179.97438 * 1 2 3 35 35 H 1.08990 * 109.46758 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.46567 * 300.06546 * 3 2 1 37 37 H 1.09003 * 109.46834 * 60.05860 * 3 2 1 38 38 H 1.08999 * 109.59012 * 54.47049 * 4 2 1 39 39 H 1.09003 * 109.58387 * 174.89785 * 4 2 1 40 40 H 0.96993 * 119.99996 * 179.97438 * 9 8 6 41 41 H 1.08995 * 109.58444 * 173.39343 * 14 5 4 42 42 H 1.09000 * 109.58234 * 293.67386 * 14 5 4 43 43 H 1.09001 * 109.49681 * 185.41548 * 15 14 5 44 44 H 1.08999 * 109.49966 * 65.32102 * 15 14 5 45 45 H 0.97001 * 120.00057 * 25.00200 * 18 16 2 46 46 H 1.09004 * 109.44872 * 310.10734 * 23 21 19 47 47 H 1.08993 * 109.45808 * 70.06698 * 23 21 19 48 48 H 1.08994 * 109.69339 * 69.88397 * 24 23 21 49 49 H 1.09002 * 109.68512 * 190.46120 * 24 23 21 50 50 H 1.08999 * 109.69725 * 76.75503 * 31 30 28 51 51 H 1.09001 * 109.69587 * 316.16582 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 6 2.0413 -0.7242 -1.2493 5 7 1.6515 -2.1385 -1.1690 6 6 0.9632 -2.7318 -2.1932 7 1 0.3071 -3.5656 -1.9913 8 6 1.1084 -2.2615 -3.4911 9 7 2.1332 -1.4968 -3.8032 10 14 -0.1505 -2.7139 -4.7950 11 1 -1.2325 -1.6970 -4.8123 12 1 0.5085 -2.7584 -6.1250 13 1 -0.7282 -4.0462 -4.4841 14 6 2.0139 -2.9040 0.0317 15 6 1.5029 -2.1554 1.2666 16 6 2.0407 -0.7227 1.2486 17 1 3.1304 -0.7443 1.2354 18 7 1.5810 -0.0137 2.4453 19 6 2.2697 -0.1216 3.5988 20 8 3.2697 -0.8061 3.6462 21 6 1.7964 0.6073 4.8299 22 1 0.7931 0.2693 5.0889 23 6 2.7486 0.3156 5.9929 24 6 2.1413 0.8432 7.2993 25 6 1.7063 2.2679 7.0781 26 7 1.4115 3.2043 7.9740 27 7 1.0884 4.2857 7.3489 28 7 1.1569 4.1020 6.0728 29 1 0.9627 4.7633 5.3903 30 6 1.5439 2.8333 5.8564 31 6 1.7717 2.1162 4.5526 32 1 -0.3633 0.5129 0.8905 33 1 -0.3633 0.5149 -0.8895 34 1 -0.3634 -1.0276 -0.0005 35 1 3.1306 1.4417 -0.0005 36 1 1.6766 1.9566 -0.8894 37 1 1.6785 1.9560 0.8905 38 1 1.6008 -0.2738 -2.1388 39 1 3.1275 -0.6467 -1.2977 40 1 2.2349 -1.1684 -4.7102 41 1 1.5553 -3.8918 -0.0126 42 1 3.0977 -3.0065 0.0864 43 1 1.8479 -2.6622 2.1679 44 1 0.4132 -2.1351 1.2547 45 1 0.7810 0.5335 2.4075 46 1 2.9042 -0.7603 6.0735 47 1 3.7040 0.8081 5.8122 48 1 1.2802 0.2350 7.5760 49 1 2.8879 0.8061 8.0926 50 1 2.7247 2.4266 4.1242 51 1 0.9635 2.3490 3.8593 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941161735.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:20 Heat of formation + Delta-G solvation = 40.754919 kcal Electronic energy + Delta-G solvation = -31949.003661 eV Core-core repulsion = 27884.216898 eV Total energy + Delta-G solvation = -4064.786763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.45586 -41.45032 -39.81289 -37.51243 -36.22647 -34.92602 -34.19760 -33.79975 -31.77038 -31.25471 -30.66245 -28.08735 -27.56823 -26.94487 -25.63951 -24.45001 -23.86960 -23.42428 -22.25369 -21.50848 -20.52564 -19.61342 -19.16520 -18.72767 -17.86755 -17.25766 -16.96177 -16.73304 -16.41887 -15.70530 -15.45658 -15.35591 -15.08092 -15.02624 -14.91461 -14.68583 -14.65584 -14.43672 -14.15208 -13.78365 -13.24508 -13.12072 -13.04632 -13.00101 -12.83865 -12.66814 -12.61665 -12.57367 -12.37899 -12.28295 -12.17940 -12.03059 -11.89186 -11.78555 -11.58227 -11.56137 -11.30629 -11.26285 -11.12079 -10.67798 -10.50963 -9.90124 -9.87560 -8.65409 -7.84736 -5.28973 0.54422 1.46517 1.48161 1.49763 1.57943 1.62488 1.90421 2.25577 2.53015 3.22908 3.30243 3.49516 3.67914 3.72309 3.78144 3.82430 3.97229 4.02528 4.06018 4.17338 4.29747 4.40597 4.41256 4.50008 4.52022 4.58367 4.65776 4.71891 4.81212 4.87422 4.89816 4.93343 5.01541 5.02671 5.04914 5.08508 5.15339 5.17470 5.25742 5.31229 5.37312 5.38644 5.41124 5.49915 5.63930 5.66142 5.75222 5.80625 5.99709 6.41810 6.69895 7.18097 7.38558 7.41027 7.88446 8.40620 9.21589 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023968 B = 0.002412 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.922910 B =11604.872048 C =12198.361040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.193 3.807 5 N -0.603 5.603 6 C -0.254 4.254 7 H 0.066 0.934 8 C -0.048 4.048 9 N -0.935 5.935 10 Si 0.961 3.039 11 H -0.283 1.283 12 H -0.299 1.299 13 H -0.271 1.271 14 C 0.142 3.858 15 C -0.128 4.128 16 C 0.177 3.823 17 H 0.053 0.947 18 N -0.705 5.705 19 C 0.519 3.481 20 O -0.578 6.578 21 C -0.092 4.092 22 H 0.128 0.872 23 C -0.096 4.096 24 C -0.028 4.028 25 C -0.032 4.032 26 N -0.295 5.295 27 N -0.118 5.118 28 N -0.363 5.363 29 H 0.465 0.535 30 C 0.004 3.996 31 C -0.034 4.034 32 H 0.076 0.924 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.040 0.960 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.061 0.939 39 H -0.017 1.017 40 H 0.249 0.751 41 H 0.054 0.946 42 H 0.002 0.998 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.412 0.588 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.098 0.902 49 H 0.090 0.910 50 H 0.098 0.902 51 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.761 10.687 18.097 21.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.089 4.089 3 C -0.186 4.186 4 C 0.067 3.933 5 N -0.326 5.326 6 C -0.384 4.384 7 H 0.083 0.917 8 C -0.243 4.243 9 N -0.581 5.581 10 Si 0.790 3.210 11 H -0.209 1.209 12 H -0.226 1.226 13 H -0.196 1.196 14 C 0.016 3.984 15 C -0.168 4.168 16 C 0.071 3.929 17 H 0.071 0.929 18 N -0.357 5.357 19 C 0.306 3.694 20 O -0.457 6.457 21 C -0.114 4.114 22 H 0.146 0.854 23 C -0.134 4.134 24 C -0.067 4.067 25 C -0.172 4.172 26 N -0.160 5.160 27 N -0.096 5.096 28 N -0.085 5.085 29 H 0.315 0.685 30 C -0.133 4.133 31 C -0.073 4.073 32 H 0.095 0.905 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.080 0.920 39 H 0.001 0.999 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.020 0.980 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.250 0.750 46 H 0.101 0.899 47 H 0.083 0.917 48 H 0.116 0.884 49 H 0.108 0.892 50 H 0.117 0.883 51 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.329 11.218 19.230 22.680 hybrid contribution -0.234 -0.426 -2.502 2.549 sum -4.562 10.792 16.728 20.423 Atomic orbital electron populations 1.21674 0.93286 1.01755 1.01059 1.21316 0.97210 0.95762 0.94563 1.21729 1.00191 0.94282 1.02443 1.20635 0.94043 0.83460 0.95200 1.44277 1.65112 1.06636 1.16544 1.19455 1.17545 1.14824 0.86587 0.91666 1.25704 0.98602 1.01197 0.98794 1.70184 1.29060 1.40076 1.18782 0.85352 0.78946 0.78291 0.78380 1.20940 1.22644 1.19599 1.20973 0.95771 0.94766 0.86888 1.22236 1.01397 0.95783 0.97361 1.20531 0.97565 0.91007 0.83754 0.92883 1.46077 1.30156 1.50237 1.09212 1.20881 0.82782 0.80915 0.84782 1.90727 1.27436 1.42425 1.85102 1.21327 1.03287 0.94414 0.92336 0.85443 1.21405 0.97821 1.02572 0.91651 1.20024 1.01814 0.86591 0.98313 1.22177 1.06679 0.99261 0.89124 1.74798 1.15354 0.97289 1.28542 1.78518 1.22282 1.19959 0.88886 1.44707 1.44329 1.11246 1.08218 0.68542 1.21934 1.05765 0.86297 0.99315 1.20218 1.05510 0.90971 0.90630 0.90541 0.94103 0.93243 0.94115 0.92980 0.89773 0.92043 0.99851 0.94212 0.92713 0.97987 0.92181 0.90770 0.74995 0.89932 0.91749 0.88364 0.89186 0.88331 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.35 7.83 71.98 0.56 -2.78 16 2 C -0.09 -2.68 0.56 -52.10 -0.03 -2.71 16 3 C -0.13 -3.23 8.31 71.98 0.60 -2.63 16 4 C 0.19 8.65 3.99 86.36 0.34 9.00 16 5 N -0.60 -28.75 2.43 -699.11 -1.70 -30.45 16 6 C -0.25 -13.36 9.59 84.03 0.81 -12.56 16 7 H 0.07 3.37 7.89 -2.91 -0.02 3.35 16 8 C -0.05 -2.57 4.91 84.86 0.42 -2.15 16 9 N -0.93 -53.78 11.19 21.65 0.24 -53.54 16 10 Si 0.96 43.48 29.59 68.60 2.03 45.51 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 13 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 14 C 0.14 5.85 6.52 86.36 0.56 6.42 16 15 C -0.13 -4.11 5.31 30.67 0.16 -3.95 16 16 C 0.18 5.17 1.57 45.02 0.07 5.24 16 17 H 0.05 1.90 7.58 -2.39 -0.02 1.89 16 18 N -0.70 -13.56 4.19 -442.41 -1.86 -15.42 16 19 C 0.52 10.50 7.10 87.66 0.62 11.12 16 20 O -0.58 -17.49 15.47 -3.04 -0.05 -17.54 16 21 C -0.09 -1.10 2.50 -11.36 -0.03 -1.13 16 22 H 0.13 1.04 8.12 -2.39 -0.02 1.02 16 23 C -0.10 -1.37 4.64 30.77 0.14 -1.22 16 24 C -0.03 -0.38 6.30 29.96 0.19 -0.19 16 25 C -0.03 -0.55 7.11 41.75 0.30 -0.25 16 26 N -0.29 -6.76 12.40 -48.99 -0.61 -7.37 16 27 N -0.12 -2.39 13.40 37.02 0.50 -1.89 16 28 N -0.36 -4.31 6.97 -48.27 -0.34 -4.64 16 29 H 0.47 1.65 8.96 -219.68 -1.97 -0.32 16 30 C 0.00 0.05 7.15 41.50 0.30 0.34 16 31 C -0.03 -0.27 5.43 29.94 0.16 -0.11 16 32 H 0.08 1.38 6.58 -2.39 -0.02 1.37 16 33 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.05 1.61 5.97 -2.39 -0.01 1.60 16 35 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.40 7.36 -2.39 -0.02 1.38 16 38 H 0.06 3.15 6.03 -2.39 -0.01 3.13 16 39 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 40 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 41 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 42 H 0.00 0.09 8.14 -2.39 -0.02 0.08 16 43 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.07 2.26 6.33 -2.39 -0.02 2.24 16 45 H 0.41 5.15 6.33 -92.71 -0.59 4.56 16 46 H 0.08 1.33 7.76 -2.38 -0.02 1.32 16 47 H 0.06 1.06 8.12 -2.39 -0.02 1.04 16 48 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 50 H 0.10 0.84 8.12 -2.39 -0.02 0.82 16 51 H 0.12 0.23 7.90 -2.39 -0.02 0.21 16 Total: -1.00 -74.73 390.18 1.80 -72.92 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -1.59 Total: 9.97 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 5.18 Total: 2.44 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -3.76 Total: -113.31 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.05 Total: -17.54 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -74.73 1.80 -72.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941161735.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.678 kcal (2) G-P(sol) polarization free energy of solvation -74.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds