Wall clock time and date at job start Wed Apr 1 2020 04:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.49278 * 2 1 4 4 C 1.53191 * 109.49853 * 239.93453 * 2 1 3 5 5 N 1.46937 * 108.76963 * 185.44199 * 4 2 1 6 6 C 1.36934 * 120.60677 * 233.57605 * 5 4 2 7 7 H 1.07991 * 119.99810 * 151.80003 * 6 5 4 8 8 C 1.38808 * 119.99707 * 331.80131 * 6 5 4 9 9 N 1.31621 * 120.00477 * 343.09171 * 8 6 5 10 10 Si 1.86803 * 119.99773 * 163.09255 * 8 6 5 11 11 H 1.48498 * 109.47382 * 59.99622 * 10 8 6 12 12 H 1.48504 * 109.47297 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47176 * 299.99868 * 10 8 6 14 14 C 1.46934 * 118.76242 * 53.55847 * 5 4 2 15 15 C 1.53197 * 108.77419 * 306.40968 * 14 5 4 16 16 C 1.53038 * 109.31208 * 54.63653 * 15 14 5 17 17 H 1.09002 * 109.45259 * 58.64992 * 16 15 14 18 18 N 1.46507 * 109.45896 * 178.61406 * 16 15 14 19 19 C 1.34773 * 119.99674 * 275.06951 * 18 16 15 20 20 O 1.21279 * 120.00398 * 359.97438 * 19 18 16 21 21 C 1.50702 * 119.99636 * 180.02562 * 19 18 16 22 22 H 1.08999 * 109.45924 * 59.99389 * 21 19 18 23 23 C 1.53106 * 109.45887 * 179.97438 * 21 19 18 24 24 C 1.53419 * 109.58774 * 190.09395 * 23 21 19 25 25 C 1.50596 * 108.32728 * 310.17883 * 24 23 21 26 26 N 1.32909 * 129.16552 * 196.60842 * 25 24 23 27 27 N 1.29014 * 108.63803 * 179.77974 * 26 25 24 28 28 N 1.29113 * 110.26059 * 0.02562 * 27 26 25 29 29 H 0.96995 * 126.00559 * 180.02562 * 28 27 26 30 30 C 1.34396 * 107.98446 * 0.06264 * 28 27 26 31 31 C 1.50531 * 129.25507 * 179.84416 * 30 28 27 32 32 H 1.09000 * 109.46727 * 60.00080 * 1 2 3 33 33 H 1.08994 * 109.46939 * 300.00301 * 1 2 3 34 34 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.47135 * 60.00253 * 3 2 1 36 36 H 1.09008 * 109.46795 * 179.97438 * 3 2 1 37 37 H 1.09003 * 109.47047 * 299.99440 * 3 2 1 38 38 H 1.08999 * 109.58431 * 305.19910 * 4 2 1 39 39 H 1.08999 * 109.58385 * 65.62766 * 4 2 1 40 40 H 0.96997 * 119.99783 * 180.02562 * 9 8 6 41 41 H 1.08991 * 109.58352 * 186.62427 * 14 5 4 42 42 H 1.09006 * 109.70229 * 66.26424 * 14 5 4 43 43 H 1.09004 * 109.49712 * 294.68557 * 15 14 5 44 44 H 1.08995 * 109.51946 * 174.60072 * 15 14 5 45 45 H 0.96998 * 119.99916 * 95.06698 * 18 16 15 46 46 H 1.09003 * 109.45246 * 310.12303 * 23 21 19 47 47 H 1.09009 * 109.45025 * 70.05251 * 23 21 19 48 48 H 1.08999 * 109.70899 * 190.46339 * 24 23 21 49 49 H 1.09004 * 109.68051 * 69.87462 * 24 23 21 50 50 H 1.09004 * 109.68797 * 76.73905 * 31 30 28 51 51 H 1.08995 * 109.69660 * 316.15578 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0414 -0.7235 -1.2498 5 7 3.5047 -0.8293 -1.1693 6 6 4.2937 -0.3794 -2.1941 7 1 5.2960 -0.0323 -1.9915 8 6 3.8050 -0.3695 -3.4933 9 7 2.7418 -1.0813 -3.8020 10 14 4.6564 0.6542 -4.8035 11 1 6.0618 0.1983 -4.9523 12 1 3.9441 0.4946 -6.0968 13 1 4.6397 2.0841 -4.4030 14 6 4.1054 -1.4266 0.0313 15 6 3.5709 -0.6945 1.2663 16 6 2.0409 -0.7227 1.2486 17 1 1.6970 -1.7569 1.2358 18 7 1.5265 -0.0522 2.4454 19 6 1.3985 -0.7371 3.5990 20 8 1.7087 -1.9086 3.6463 21 6 0.8689 -0.0476 4.8299 22 1 -0.1358 0.3265 4.6326 23 6 0.8236 -1.0428 5.9924 24 6 0.0568 -0.4250 7.1689 25 6 0.6175 0.9480 7.4308 26 7 0.4835 1.7184 8.5055 27 7 1.1332 2.8157 8.3097 28 7 1.6925 2.8027 7.1461 29 1 2.2355 3.5111 6.7665 30 6 1.3893 1.6354 6.5530 31 6 1.7881 1.1257 5.1939 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.6775 1.9563 0.8900 36 1 3.1307 1.4419 0.0005 37 1 1.6775 1.9563 -0.8901 38 1 1.6053 -1.7212 -1.2984 39 1 1.7639 -0.1573 -2.1389 40 1 2.4006 -1.0746 -4.7100 41 1 5.1896 -1.3244 -0.0132 42 1 3.8398 -2.4822 0.0888 43 1 3.9159 0.3394 1.2541 44 1 3.9334 -1.1884 2.1678 45 1 1.2781 0.8847 2.4074 46 1 0.3207 -1.9547 5.6703 47 1 1.8400 -1.2808 6.3063 48 1 0.1800 -1.0472 8.0553 49 1 -1.0011 -0.3478 6.9176 50 1 2.8238 0.7867 5.2182 51 1 1.6785 1.9209 4.4567 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941161737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:31 Heat of formation + Delta-G solvation = 62.150894 kcal Electronic energy + Delta-G solvation = -31947.634125 eV Core-core repulsion = 27883.775161 eV Total energy + Delta-G solvation = -4063.858964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.78749 -40.36270 -38.56234 -36.69288 -34.68166 -34.22493 -32.93829 -32.09365 -30.77223 -30.60827 -29.28248 -26.84181 -26.01539 -25.54541 -24.67288 -23.51208 -23.12953 -22.18142 -20.70828 -20.52720 -19.70179 -18.67735 -18.10926 -17.25742 -16.70595 -16.43685 -15.74501 -15.70955 -14.92655 -14.43683 -14.35403 -14.26900 -14.13859 -13.96134 -13.85486 -13.57933 -13.38363 -13.23816 -12.80733 -12.50679 -12.33826 -12.27458 -11.89936 -11.71723 -11.56714 -11.53003 -11.38282 -11.35252 -11.10954 -10.93254 -10.91843 -10.74356 -10.65599 -10.63073 -10.28908 -10.17135 -10.02763 -9.85345 -9.69357 -9.43747 -9.24539 -8.74249 -8.49804 -6.71702 -5.84140 -3.26404 1.17625 2.18032 2.27582 2.69149 3.22328 3.33966 3.40280 3.40604 3.84775 4.13683 4.33998 4.39635 4.44588 4.57972 4.74257 4.91703 4.96328 5.06682 5.12735 5.20544 5.22578 5.34758 5.36033 5.44737 5.51316 5.51915 5.65873 5.76352 5.80117 5.86654 5.87691 6.00817 6.01601 6.03434 6.15432 6.24379 6.34659 6.40306 6.41926 6.45681 6.57327 6.64606 6.76786 6.86741 6.92956 6.97676 7.26288 7.54802 7.64669 7.75117 8.10263 8.29984 8.39946 9.16101 9.79197 10.36164 11.24512 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.002425 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.833210 B =11545.259695 C =11924.633310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.126 4.126 4 C 0.186 3.814 5 N -0.589 5.589 6 C -0.252 4.252 7 H 0.064 0.936 8 C 0.004 3.996 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.284 1.284 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.163 3.837 17 H 0.081 0.919 18 N -0.719 5.719 19 C 0.515 3.485 20 O -0.535 6.535 21 C -0.103 4.103 22 H 0.103 0.897 23 C -0.100 4.100 24 C -0.034 4.034 25 C -0.015 4.015 26 N -0.258 5.258 27 N -0.090 5.090 28 N -0.382 5.382 29 H 0.449 0.551 30 C -0.010 4.010 31 C -0.038 4.038 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.028 0.972 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.020 0.980 39 H 0.092 0.908 40 H 0.255 0.745 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.062 0.938 44 H 0.053 0.947 45 H 0.394 0.606 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.245 6.427 17.549 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.099 4.099 3 C -0.184 4.184 4 C 0.059 3.941 5 N -0.311 5.311 6 C -0.381 4.381 7 H 0.082 0.918 8 C -0.194 4.194 9 N -0.546 5.546 10 Si 0.730 3.270 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.211 1.211 14 C 0.020 3.980 15 C -0.182 4.182 16 C 0.059 3.941 17 H 0.100 0.900 18 N -0.370 5.370 19 C 0.300 3.700 20 O -0.411 6.411 21 C -0.125 4.125 22 H 0.121 0.879 23 C -0.139 4.139 24 C -0.074 4.074 25 C -0.154 4.154 26 N -0.124 5.124 27 N -0.069 5.069 28 N -0.101 5.101 29 H 0.294 0.706 30 C -0.146 4.146 31 C -0.078 4.078 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.047 0.953 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.038 0.962 39 H 0.111 0.889 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.229 0.771 46 H 0.109 0.891 47 H 0.094 0.906 48 H 0.108 0.892 49 H 0.104 0.896 50 H 0.113 0.887 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.384 6.280 18.775 20.516 hybrid contribution 0.831 1.076 -1.971 2.394 sum -4.552 7.356 16.805 18.900 Atomic orbital electron populations 1.21764 0.95403 1.01371 1.00648 1.21566 0.94443 0.96738 0.97199 1.21743 1.02581 0.94741 0.99287 1.20827 0.83123 0.96783 0.93320 1.44035 1.01621 1.69215 1.16215 1.19100 0.97965 1.35372 0.85702 0.91783 1.25029 0.98496 0.98936 0.96974 1.70008 1.25639 1.40086 1.18882 0.86409 0.79030 0.80454 0.81099 1.20903 1.21664 1.21086 1.20872 0.96627 0.94309 0.86217 1.22435 0.94828 1.01472 0.99446 1.21017 0.93784 0.96835 0.82432 0.90049 1.46391 1.65670 1.14368 1.10544 1.20299 0.78261 0.87213 0.84252 1.90722 1.49531 1.16146 1.84712 1.21377 1.00643 0.95901 0.94563 0.87878 1.21477 1.02186 0.97938 0.92259 1.20037 0.99598 0.88460 0.99265 1.21808 1.02646 0.99652 0.91327 1.74833 1.16193 0.98573 1.22832 1.78584 1.10732 1.17821 0.99792 1.44707 1.36778 1.15430 1.13173 0.70568 1.21802 1.04528 0.88669 0.99569 1.20138 1.00774 0.97318 0.89548 0.92620 0.93879 0.93016 0.95328 0.91103 0.92943 0.96241 0.88942 0.93541 0.92648 0.96260 0.91940 0.92818 0.77089 0.89148 0.90643 0.89207 0.89617 0.88676 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 8.31 37.16 0.31 -1.60 16 2 C -0.10 -1.58 0.56 -154.38 -0.09 -1.67 16 3 C -0.13 -1.92 7.83 37.16 0.29 -1.63 16 4 C 0.19 4.06 3.98 -3.70 -0.01 4.04 16 5 N -0.59 -13.67 2.43 -172.31 -0.42 -14.09 16 6 C -0.25 -6.50 9.58 -15.06 -0.14 -6.65 16 7 H 0.06 1.64 7.88 -52.49 -0.41 1.22 16 8 C 0.00 0.12 4.92 -17.43 -0.09 0.03 16 9 N -0.90 -25.07 11.20 55.49 0.62 -24.45 16 10 Si 0.90 20.85 29.59 -169.99 -5.03 15.82 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 14 C 0.15 2.95 6.52 -3.70 -0.02 2.93 16 15 C -0.14 -2.33 5.31 -26.61 -0.14 -2.47 16 16 C 0.16 2.51 1.57 -67.88 -0.11 2.40 16 17 H 0.08 1.48 7.58 -51.93 -0.39 1.08 16 18 N -0.72 -8.29 4.19 -53.76 -0.23 -8.52 16 19 C 0.51 6.02 7.10 -10.99 -0.08 5.94 16 20 O -0.53 -8.49 15.47 5.56 0.09 -8.40 16 21 C -0.10 -0.82 2.50 -91.50 -0.23 -1.05 16 22 H 0.10 0.69 8.12 -51.93 -0.42 0.27 16 23 C -0.10 -0.83 4.64 -26.46 -0.12 -0.95 16 24 C -0.03 -0.27 6.30 -27.72 -0.17 -0.44 16 25 C -0.01 -0.14 7.11 -83.12 -0.59 -0.73 16 26 N -0.26 -3.14 12.40 33.16 0.41 -2.73 16 27 N -0.09 -1.00 13.40 60.35 0.81 -0.19 16 28 N -0.38 -2.86 6.97 33.39 0.23 -2.63 16 29 H 0.45 1.63 8.96 -190.07 -1.70 -0.08 16 30 C -0.01 -0.08 7.15 -82.50 -0.59 -0.67 16 31 C -0.04 -0.25 5.43 -27.74 -0.15 -0.40 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.50 7.36 -51.93 -0.38 0.12 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.03 0.33 6.58 -51.93 -0.34 -0.01 16 36 H 0.07 1.22 5.97 -51.92 -0.31 0.91 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.09 2.28 6.06 -51.93 -0.31 1.97 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.00 6.33 -51.93 -0.33 0.67 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.39 3.63 6.33 -40.82 -0.26 3.37 16 46 H 0.09 0.80 7.76 -51.93 -0.40 0.40 16 47 H 0.07 0.68 8.12 -51.92 -0.42 0.26 16 48 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.09 0.64 8.12 -51.93 -0.42 0.22 16 51 H 0.09 0.40 7.90 -51.93 -0.41 -0.01 16 LS Contribution 390.21 15.07 5.88 5.88 Total: -1.00 -32.19 390.21 -9.03 -41.22 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -9.45 Total: 1.00 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -1.94 Total: -2.90 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 1.43 Total: -52.61 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.09 Total: -8.40 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.19 -9.03 -41.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941161737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.370 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds