Wall clock time and date at job start Wed Apr 1 2020 04:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.49278 * 2 1 4 4 C 1.53191 * 109.49853 * 239.93453 * 2 1 3 5 5 N 1.46937 * 108.76963 * 185.44199 * 4 2 1 6 6 C 1.36934 * 120.60677 * 233.57605 * 5 4 2 7 7 H 1.07991 * 119.99810 * 151.80003 * 6 5 4 8 8 C 1.38808 * 119.99707 * 331.80131 * 6 5 4 9 9 N 1.31621 * 120.00477 * 343.09171 * 8 6 5 10 10 Si 1.86803 * 119.99773 * 163.09255 * 8 6 5 11 11 H 1.48498 * 109.47382 * 59.99622 * 10 8 6 12 12 H 1.48504 * 109.47297 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.47176 * 299.99868 * 10 8 6 14 14 C 1.46934 * 118.76242 * 53.55847 * 5 4 2 15 15 C 1.53197 * 108.77419 * 306.40968 * 14 5 4 16 16 C 1.53038 * 109.31208 * 54.63653 * 15 14 5 17 17 H 1.09002 * 109.45259 * 58.64992 * 16 15 14 18 18 N 1.46507 * 109.45896 * 178.61406 * 16 15 14 19 19 C 1.34773 * 119.99674 * 275.06951 * 18 16 15 20 20 O 1.21279 * 120.00398 * 359.97438 * 19 18 16 21 21 C 1.50702 * 119.99636 * 180.02562 * 19 18 16 22 22 H 1.08999 * 109.45924 * 59.99389 * 21 19 18 23 23 C 1.53106 * 109.45887 * 179.97438 * 21 19 18 24 24 C 1.53419 * 109.58774 * 190.09395 * 23 21 19 25 25 C 1.50596 * 108.32728 * 310.17883 * 24 23 21 26 26 N 1.32909 * 129.16552 * 196.60842 * 25 24 23 27 27 N 1.29014 * 108.63803 * 179.77974 * 26 25 24 28 28 N 1.29113 * 110.26059 * 0.02562 * 27 26 25 29 29 H 0.96995 * 126.00559 * 180.02562 * 28 27 26 30 30 C 1.34396 * 107.98446 * 0.06264 * 28 27 26 31 31 C 1.50531 * 129.25507 * 179.84416 * 30 28 27 32 32 H 1.09000 * 109.46727 * 60.00080 * 1 2 3 33 33 H 1.08994 * 109.46939 * 300.00301 * 1 2 3 34 34 H 1.09000 * 109.46847 * 179.97438 * 1 2 3 35 35 H 1.09000 * 109.47135 * 60.00253 * 3 2 1 36 36 H 1.09008 * 109.46795 * 179.97438 * 3 2 1 37 37 H 1.09003 * 109.47047 * 299.99440 * 3 2 1 38 38 H 1.08999 * 109.58431 * 305.19910 * 4 2 1 39 39 H 1.08999 * 109.58385 * 65.62766 * 4 2 1 40 40 H 0.96997 * 119.99783 * 180.02562 * 9 8 6 41 41 H 1.08991 * 109.58352 * 186.62427 * 14 5 4 42 42 H 1.09006 * 109.70229 * 66.26424 * 14 5 4 43 43 H 1.09004 * 109.49712 * 294.68557 * 15 14 5 44 44 H 1.08995 * 109.51946 * 174.60072 * 15 14 5 45 45 H 0.96998 * 119.99916 * 95.06698 * 18 16 15 46 46 H 1.09003 * 109.45246 * 310.12303 * 23 21 19 47 47 H 1.09009 * 109.45025 * 70.05251 * 23 21 19 48 48 H 1.08999 * 109.70899 * 190.46339 * 24 23 21 49 49 H 1.09004 * 109.68051 * 69.87462 * 24 23 21 50 50 H 1.09004 * 109.68797 * 76.73905 * 31 30 28 51 51 H 1.08995 * 109.69660 * 316.15578 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0414 -0.7235 -1.2498 5 7 3.5047 -0.8293 -1.1693 6 6 4.2937 -0.3794 -2.1941 7 1 5.2960 -0.0323 -1.9915 8 6 3.8050 -0.3695 -3.4933 9 7 2.7418 -1.0813 -3.8020 10 14 4.6564 0.6542 -4.8035 11 1 6.0618 0.1983 -4.9523 12 1 3.9441 0.4946 -6.0968 13 1 4.6397 2.0841 -4.4030 14 6 4.1054 -1.4266 0.0313 15 6 3.5709 -0.6945 1.2663 16 6 2.0409 -0.7227 1.2486 17 1 1.6970 -1.7569 1.2358 18 7 1.5265 -0.0522 2.4454 19 6 1.3985 -0.7371 3.5990 20 8 1.7087 -1.9086 3.6463 21 6 0.8689 -0.0476 4.8299 22 1 -0.1358 0.3265 4.6326 23 6 0.8236 -1.0428 5.9924 24 6 0.0568 -0.4250 7.1689 25 6 0.6175 0.9480 7.4308 26 7 0.4835 1.7184 8.5055 27 7 1.1332 2.8157 8.3097 28 7 1.6925 2.8027 7.1461 29 1 2.2355 3.5111 6.7665 30 6 1.3893 1.6354 6.5530 31 6 1.7881 1.1257 5.1939 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 0.5139 0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.6775 1.9563 0.8900 36 1 3.1307 1.4419 0.0005 37 1 1.6775 1.9563 -0.8901 38 1 1.6053 -1.7212 -1.2984 39 1 1.7639 -0.1573 -2.1389 40 1 2.4006 -1.0746 -4.7100 41 1 5.1896 -1.3244 -0.0132 42 1 3.8398 -2.4822 0.0888 43 1 3.9159 0.3394 1.2541 44 1 3.9334 -1.1884 2.1678 45 1 1.2781 0.8847 2.4074 46 1 0.3207 -1.9547 5.6703 47 1 1.8400 -1.2808 6.3063 48 1 0.1800 -1.0472 8.0553 49 1 -1.0011 -0.3478 6.9176 50 1 2.8238 0.7867 5.2182 51 1 1.6785 1.9209 4.4567 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941161737.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:30 Heat of formation + Delta-G solvation = 40.790700 kcal Electronic energy + Delta-G solvation = -31948.560372 eV Core-core repulsion = 27883.775161 eV Total energy + Delta-G solvation = -4064.785211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -44.45607 -41.44872 -39.81200 -37.51225 -36.22017 -34.92789 -34.19998 -33.79494 -31.76265 -31.25040 -30.67540 -28.08591 -27.56796 -26.94661 -25.61908 -24.46411 -23.85955 -23.42825 -22.25106 -21.51568 -20.50170 -19.64640 -19.14805 -18.72817 -17.85308 -17.25224 -16.94458 -16.69500 -16.52061 -15.69408 -15.43007 -15.29549 -15.13069 -15.01497 -14.87910 -14.75697 -14.66929 -14.39561 -14.14637 -13.78694 -13.25309 -13.12638 -13.04503 -12.98199 -12.83677 -12.67894 -12.57620 -12.56195 -12.42230 -12.28526 -12.17534 -12.02996 -11.91730 -11.78440 -11.58451 -11.56127 -11.30933 -11.26211 -11.11299 -10.67869 -10.50157 -9.89784 -9.87737 -8.64269 -7.84331 -5.29254 0.54360 1.46535 1.49232 1.50154 1.57022 1.62209 1.90798 2.25479 2.53317 3.22816 3.30962 3.49752 3.68054 3.71977 3.77736 3.82467 3.97733 4.02297 4.06677 4.17302 4.29547 4.40522 4.41382 4.50160 4.51987 4.58778 4.65028 4.72100 4.82761 4.87211 4.89338 4.92495 5.01596 5.02541 5.05260 5.08713 5.15238 5.17555 5.25497 5.31402 5.37478 5.38785 5.40814 5.49243 5.64043 5.66135 5.75250 5.80374 5.99504 6.42205 6.69958 7.18352 7.38614 7.41015 7.88702 8.41233 9.21919 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022045 B = 0.002425 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.833210 B =11545.259695 C =11924.633310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.120 4.120 4 C 0.193 3.807 5 N -0.602 5.602 6 C -0.256 4.256 7 H 0.066 0.934 8 C -0.047 4.047 9 N -0.935 5.935 10 Si 0.962 3.038 11 H -0.279 1.279 12 H -0.298 1.298 13 H -0.275 1.275 14 C 0.142 3.858 15 C -0.126 4.126 16 C 0.176 3.824 17 H 0.051 0.949 18 N -0.705 5.705 19 C 0.519 3.481 20 O -0.578 6.578 21 C -0.092 4.092 22 H 0.128 0.872 23 C -0.096 4.096 24 C -0.028 4.028 25 C -0.031 4.031 26 N -0.294 5.294 27 N -0.118 5.118 28 N -0.364 5.364 29 H 0.465 0.535 30 C 0.004 3.996 31 C -0.033 4.033 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.039 0.961 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.039 0.961 38 H -0.017 1.017 39 H 0.061 0.939 40 H 0.249 0.751 41 H 0.055 0.945 42 H 0.001 0.999 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.412 0.588 46 H 0.082 0.918 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.098 0.902 50 H 0.098 0.902 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.404 8.954 18.884 21.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.177 4.177 4 C 0.067 3.933 5 N -0.325 5.325 6 C -0.386 4.386 7 H 0.084 0.916 8 C -0.243 4.243 9 N -0.581 5.581 10 Si 0.790 3.210 11 H -0.205 1.205 12 H -0.224 1.224 13 H -0.201 1.201 14 C 0.016 3.984 15 C -0.166 4.166 16 C 0.071 3.929 17 H 0.069 0.931 18 N -0.357 5.357 19 C 0.306 3.694 20 O -0.457 6.457 21 C -0.113 4.113 22 H 0.146 0.854 23 C -0.135 4.135 24 C -0.067 4.067 25 C -0.172 4.172 26 N -0.160 5.160 27 N -0.096 5.096 28 N -0.085 5.085 29 H 0.314 0.686 30 C -0.133 4.133 31 C -0.073 4.073 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.001 0.999 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.019 0.981 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.250 0.750 46 H 0.100 0.900 47 H 0.083 0.917 48 H 0.108 0.892 49 H 0.117 0.883 50 H 0.116 0.884 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.534 8.869 20.157 22.707 hybrid contribution 0.929 0.181 -2.382 2.563 sum -4.605 9.050 17.775 20.471 Atomic orbital electron populations 1.21731 0.93474 1.01214 1.02305 1.21314 0.95888 0.97000 0.94654 1.21672 1.01306 0.93657 1.01076 1.20625 0.82535 0.95013 0.95132 1.44258 1.02094 1.69568 1.16570 1.19414 0.98263 1.34428 0.86475 0.91601 1.25729 0.99419 1.00232 0.98898 1.70177 1.27299 1.41854 1.18796 0.85429 0.77889 0.79344 0.78300 1.20534 1.22421 1.20059 1.20976 0.96763 0.93751 0.86927 1.22225 0.95448 1.01579 0.97334 1.20532 0.93061 0.95585 0.83712 0.93065 1.46077 1.65390 1.15011 1.09202 1.20882 0.77015 0.86621 0.84848 1.90725 1.51250 1.18362 1.85360 1.21322 1.02012 0.95934 0.92082 0.85407 1.21403 1.01552 0.97885 0.92611 1.20024 1.00100 0.87604 0.99001 1.22177 1.03415 1.00332 0.91292 1.74794 1.17434 0.99433 1.24308 1.78519 1.11870 1.17973 1.01281 1.44710 1.35886 1.15717 1.12208 0.68556 1.21938 1.03393 0.88270 0.99717 1.20205 1.00320 0.97440 0.89309 0.92981 0.90113 0.94194 0.90500 0.93001 0.94180 0.99928 0.92104 0.94211 0.92637 0.98140 0.90510 0.92124 0.74993 0.89954 0.91733 0.89176 0.88347 0.88388 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.31 71.98 0.60 -2.84 16 2 C -0.09 -2.71 0.56 -52.10 -0.03 -2.74 16 3 C -0.12 -3.31 7.83 71.98 0.56 -2.74 16 4 C 0.19 8.72 3.98 86.36 0.34 9.06 16 5 N -0.60 -28.60 2.43 -699.06 -1.70 -30.30 16 6 C -0.26 -13.39 9.58 84.03 0.81 -12.58 16 7 H 0.07 3.36 7.88 -2.91 -0.02 3.34 16 8 C -0.05 -2.55 4.92 84.86 0.42 -2.13 16 9 N -0.94 -53.90 11.20 21.65 0.24 -53.66 16 10 Si 0.96 43.33 29.59 68.60 2.03 45.36 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 C 0.14 5.79 6.52 86.36 0.56 6.35 16 15 C -0.13 -3.95 5.31 30.67 0.16 -3.79 16 16 C 0.18 5.17 1.57 45.02 0.07 5.24 16 17 H 0.05 1.86 7.58 -2.39 -0.02 1.84 16 18 N -0.70 -13.60 4.19 -442.39 -1.86 -15.45 16 19 C 0.52 10.52 7.10 87.66 0.62 11.15 16 20 O -0.58 -17.53 15.47 -3.02 -0.05 -17.58 16 21 C -0.09 -1.10 2.50 -11.36 -0.03 -1.13 16 22 H 0.13 1.02 8.12 -2.39 -0.02 1.00 16 23 C -0.10 -1.37 4.64 30.77 0.14 -1.23 16 24 C -0.03 -0.38 6.30 29.96 0.19 -0.19 16 25 C -0.03 -0.54 7.11 41.75 0.30 -0.25 16 26 N -0.29 -6.77 12.40 -48.99 -0.61 -7.38 16 27 N -0.12 -2.40 13.40 37.02 0.50 -1.90 16 28 N -0.36 -4.37 6.97 -48.27 -0.34 -4.71 16 29 H 0.47 1.76 8.96 -219.68 -1.97 -0.21 16 30 C 0.00 0.05 7.15 41.50 0.30 0.34 16 31 C -0.03 -0.27 5.43 29.94 0.16 -0.11 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.54 7.36 -2.39 -0.02 1.52 16 34 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.37 6.58 -2.39 -0.02 1.35 16 36 H 0.05 1.65 5.97 -2.38 -0.01 1.64 16 37 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 38 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.06 3.13 6.06 -2.39 -0.01 3.11 16 40 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 41 H 0.06 2.21 7.93 -2.39 -0.02 2.19 16 42 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 43 H 0.08 2.23 6.33 -2.39 -0.02 2.22 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 45 H 0.41 5.17 6.33 -92.71 -0.59 4.58 16 46 H 0.08 1.33 7.76 -2.39 -0.02 1.32 16 47 H 0.06 1.06 8.12 -2.38 -0.02 1.05 16 48 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.10 0.87 8.12 -2.38 -0.02 0.85 16 51 H 0.12 0.28 7.90 -2.39 -0.02 0.26 16 Total: -1.00 -74.52 390.21 1.80 -72.72 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -1.59 Total: 10.48 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 5.18 Total: 2.42 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -3.76 Total: -113.39 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.05 Total: -17.58 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -74.52 1.80 -72.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941161737.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.507 kcal (2) G-P(sol) polarization free energy of solvation -74.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds