Wall clock time and date at job start Wed Apr 1 2020 04:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.49413 * 2 1 4 4 C 1.53197 * 109.49667 * 239.90393 * 2 1 3 5 5 N 1.46922 * 108.77364 * 294.67992 * 4 2 1 6 6 C 1.36945 * 120.62662 * 126.37295 * 5 4 2 7 7 H 1.08003 * 119.99274 * 207.68833 * 6 5 4 8 8 C 1.38808 * 120.00184 * 27.68376 * 6 5 4 9 9 N 1.31620 * 119.99978 * 17.36766 * 8 6 5 10 10 Si 1.86797 * 120.00082 * 197.36012 * 8 6 5 11 11 H 1.48496 * 109.47287 * 90.00432 * 10 8 6 12 12 H 1.48501 * 109.47095 * 210.00650 * 10 8 6 13 13 H 1.48498 * 109.47062 * 330.00304 * 10 8 6 14 14 C 1.46921 * 118.73923 * 306.39356 * 5 4 2 15 15 C 1.53185 * 108.77666 * 53.61109 * 14 5 4 16 16 C 1.53036 * 109.49908 * 120.06434 * 2 1 3 17 17 H 1.08997 * 109.46276 * 178.59478 * 16 2 1 18 18 N 1.46507 * 109.45893 * 298.56744 * 16 2 1 19 19 C 1.34774 * 119.99645 * 204.99790 * 18 16 2 20 20 O 1.21283 * 120.00340 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99863 * 180.02562 * 19 18 16 22 22 H 1.09008 * 109.45383 * 299.95532 * 21 19 18 23 23 C 1.53136 * 109.45499 * 180.02562 * 21 19 18 24 24 C 1.53459 * 109.30850 * 170.52875 * 23 21 19 25 25 C 1.50807 * 108.13419 * 48.69720 * 24 23 21 26 26 N 1.29841 * 128.52369 * 164.07994 * 25 24 23 27 27 N 1.28905 * 109.48010 * 180.15106 * 26 25 24 28 28 C 1.30838 * 109.73759 * 359.97438 * 27 26 25 29 29 N 1.34693 * 107.07219 * 359.96070 * 28 27 26 30 30 C 1.46257 * 128.84388 * 180.35497 * 29 28 27 31 31 H 1.08997 * 109.46975 * 299.93246 * 1 2 3 32 32 H 1.09002 * 109.47353 * 59.93850 * 1 2 3 33 33 H 1.09004 * 109.47113 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46822 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47119 * 300.06136 * 3 2 1 36 36 H 1.09002 * 109.47260 * 60.06636 * 3 2 1 37 37 H 1.09002 * 109.58437 * 54.47025 * 4 2 1 38 38 H 1.09001 * 109.58357 * 174.89343 * 4 2 1 39 39 H 0.97001 * 119.99973 * 179.97438 * 9 8 6 40 40 H 1.09004 * 109.58766 * 173.39917 * 14 5 4 41 41 H 1.09002 * 109.58540 * 293.67560 * 14 5 4 42 42 H 1.09002 * 109.49870 * 185.41460 * 15 14 5 43 43 H 1.08998 * 109.49898 * 65.31815 * 15 14 5 44 44 H 0.96998 * 120.00166 * 24.99937 * 18 16 2 45 45 H 1.09000 * 109.50014 * 50.57793 * 23 21 19 46 46 H 1.09000 * 109.49635 * 290.48098 * 23 21 19 47 47 H 1.08995 * 109.73231 * 289.04115 * 24 23 21 48 48 H 1.09000 * 109.73406 * 168.35715 * 24 23 21 49 49 H 1.08007 * 126.46732 * 179.97438 * 28 27 26 50 50 H 1.09002 * 109.59709 * 282.66314 * 30 29 28 51 51 H 1.09002 * 109.59783 * 43.12083 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0413 -0.7242 -1.2494 5 7 1.6516 -2.1385 -1.1690 6 6 0.9632 -2.7318 -2.1934 7 1 0.3072 -3.5657 -1.9913 8 6 1.1083 -2.2614 -3.4912 9 7 2.1331 -1.4967 -3.8033 10 14 -0.1506 -2.7139 -4.7950 11 1 -1.2326 -1.6971 -4.8123 12 1 0.5084 -2.7583 -6.1251 13 1 -0.7281 -4.0461 -4.4841 14 6 2.0141 -2.9039 0.0316 15 6 1.5031 -2.1554 1.2665 16 6 2.0408 -0.7227 1.2485 17 1 3.1305 -0.7442 1.2354 18 7 1.5811 -0.0137 2.4453 19 6 2.2698 -0.1217 3.5987 20 8 3.2703 -0.8055 3.6459 21 6 1.7966 0.6071 4.8299 22 1 1.7797 1.6792 4.6332 23 6 2.7505 0.3175 5.9923 24 6 2.4084 1.2386 7.1711 25 6 0.9199 1.1699 7.4039 26 7 0.2458 1.5524 8.4455 27 7 -1.0078 1.3203 8.2552 28 6 -1.1830 0.7780 7.0775 29 7 0.0324 0.6697 6.5073 30 6 0.3842 0.1366 5.1915 31 1 -0.3633 0.5128 0.8906 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1306 1.4418 -0.0005 35 1 1.6766 1.9566 -0.8894 36 1 1.6784 1.9560 0.8906 37 1 1.6007 -0.2737 -2.1388 38 1 3.1275 -0.6466 -1.2979 39 1 2.2348 -1.1682 -4.7103 40 1 1.5555 -3.8918 -0.0126 41 1 3.0979 -3.0063 0.0862 42 1 1.8482 -2.6621 2.1678 43 1 0.4133 -2.1352 1.2546 44 1 0.7810 0.5335 2.4075 45 1 3.7771 0.4995 5.6745 46 1 2.6434 -0.7226 6.3003 47 1 2.6967 2.2626 6.9338 48 1 2.9362 0.9047 8.0644 49 1 -2.1247 0.4747 6.6441 50 1 0.3604 -0.9528 5.2202 51 1 -0.3249 0.5006 4.4481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941237478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:41 Heat of formation + Delta-G solvation = 57.218926 kcal Electronic energy + Delta-G solvation = -32034.856966 eV Core-core repulsion = 27970.784136 eV Total energy + Delta-G solvation = -4064.072830 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.61412 -40.51989 -38.67223 -36.96810 -34.80614 -33.98467 -33.07300 -32.21042 -31.42088 -29.74489 -29.18749 -26.90754 -26.09099 -25.72395 -24.97700 -23.66231 -22.60667 -22.30471 -20.80401 -20.63545 -19.82734 -18.49018 -17.63855 -17.34602 -16.81838 -16.52666 -15.94560 -15.70889 -15.03783 -14.94143 -14.71006 -14.55755 -14.34841 -14.16872 -14.00582 -13.67009 -13.47197 -13.30495 -12.91284 -12.61968 -12.41161 -12.33652 -11.91775 -11.78860 -11.68377 -11.62965 -11.47481 -11.42804 -11.17748 -10.98535 -10.79084 -10.68823 -10.66528 -10.50514 -10.35994 -10.21429 -10.10151 -10.01389 -9.77207 -9.53966 -9.48251 -8.88246 -8.54491 -6.77459 -5.88086 -3.30108 1.50244 2.01200 2.44520 2.58887 3.01377 3.30760 3.38644 3.39435 3.70679 3.93914 4.02050 4.10057 4.35818 4.41332 4.55085 4.59583 4.73329 4.81232 5.00971 5.04352 5.14629 5.16371 5.29358 5.31182 5.43193 5.44979 5.52832 5.58145 5.68516 5.71729 5.79176 5.83972 5.93589 5.95227 6.05679 6.17127 6.27236 6.31400 6.33668 6.47705 6.48883 6.57658 6.70255 6.77572 6.85836 6.91000 7.20390 7.41134 7.54792 7.71622 8.08949 8.35379 8.42528 9.11845 9.74887 10.31213 11.20584 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.002446 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.007016 B =11446.000227 C =11820.002049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.097 4.097 3 C -0.134 4.134 4 C 0.186 3.814 5 N -0.589 5.589 6 C -0.252 4.252 7 H 0.066 0.934 8 C 0.004 3.996 9 N -0.902 5.902 10 Si 0.900 3.100 11 H -0.288 1.288 12 H -0.291 1.291 13 H -0.279 1.279 14 C 0.147 3.853 15 C -0.142 4.142 16 C 0.162 3.838 17 H 0.083 0.917 18 N -0.717 5.717 19 C 0.518 3.482 20 O -0.528 6.528 21 C -0.125 4.125 22 H 0.109 0.891 23 C -0.106 4.106 24 C -0.035 4.035 25 C 0.179 3.821 26 N -0.293 5.293 27 N -0.302 5.302 28 C 0.155 3.845 29 N -0.471 5.471 30 C 0.114 3.886 31 H 0.027 0.973 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.041 0.959 37 H 0.094 0.906 38 H 0.020 0.980 39 H 0.254 0.746 40 H 0.056 0.944 41 H 0.020 0.980 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.395 0.605 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.097 0.903 48 H 0.105 0.895 49 H 0.220 0.780 50 H 0.099 0.901 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.588 6.683 16.219 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.100 4.100 3 C -0.192 4.192 4 C 0.059 3.941 5 N -0.311 5.311 6 C -0.381 4.381 7 H 0.084 0.916 8 C -0.195 4.195 9 N -0.546 5.546 10 Si 0.730 3.270 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.205 1.205 14 C 0.020 3.980 15 C -0.182 4.182 16 C 0.059 3.941 17 H 0.101 0.899 18 N -0.368 5.368 19 C 0.302 3.698 20 O -0.404 6.404 21 C -0.147 4.147 22 H 0.127 0.873 23 C -0.145 4.145 24 C -0.074 4.074 25 C -0.089 4.089 26 N -0.133 5.133 27 N -0.141 5.141 28 C -0.132 4.132 29 N -0.163 5.163 30 C -0.009 4.009 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.112 0.888 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.230 0.770 45 H 0.117 0.883 46 H 0.098 0.902 47 H 0.115 0.885 48 H 0.123 0.877 49 H 0.236 0.764 50 H 0.117 0.883 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.160 6.776 17.406 18.803 hybrid contribution -0.967 -0.438 -2.170 2.416 sum -3.127 6.338 15.236 16.795 Atomic orbital electron populations 1.21748 0.94711 1.02593 0.99344 1.21576 0.96297 0.94958 0.97127 1.21767 1.00854 0.95896 1.00684 1.20837 0.96393 0.83548 0.93336 1.44050 1.65161 1.05644 1.16237 1.19161 1.18026 1.15171 0.85777 0.91641 1.25020 0.96973 1.00505 0.96960 1.70020 1.27282 1.38407 1.18877 0.86320 0.81128 0.78248 0.81264 1.21461 1.21767 1.20452 1.20868 0.96709 0.94297 0.86166 1.22440 1.00997 0.95222 0.99547 1.21069 0.99411 0.91353 0.82244 0.89923 1.46428 1.29416 1.50368 1.10572 1.19983 0.84175 0.81652 0.83997 1.90748 1.25303 1.39769 1.84549 1.21700 0.94545 1.02667 0.95739 0.87300 1.21556 1.00425 1.00549 0.91954 1.20301 0.84765 1.02066 1.00298 1.24898 0.96042 1.00257 0.87726 1.74083 0.98272 1.20067 1.20892 1.74497 1.09557 1.16158 1.13888 1.26316 0.90520 1.03368 0.93043 1.46142 1.07576 1.46569 1.15988 1.21933 0.96628 1.00730 0.81635 0.95379 0.92827 0.91028 0.92996 0.92501 0.93971 0.88808 0.96220 0.93564 0.92553 0.96222 0.92827 0.91828 0.77018 0.88267 0.90241 0.88456 0.87665 0.76369 0.88291 0.87893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 7.83 37.16 0.29 -1.58 16 2 C -0.10 -1.53 0.56 -154.39 -0.09 -1.61 16 3 C -0.13 -1.84 8.31 37.16 0.31 -1.53 16 4 C 0.19 3.96 3.99 -3.71 -0.01 3.94 16 5 N -0.59 -13.40 2.43 -172.32 -0.42 -13.82 16 6 C -0.25 -6.41 9.59 -15.06 -0.14 -6.56 16 7 H 0.07 1.66 7.89 -52.48 -0.41 1.24 16 8 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 9 N -0.90 -24.78 11.19 55.49 0.62 -24.16 16 10 Si 0.90 20.66 29.59 -169.99 -5.03 15.63 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 14 C 0.15 2.87 6.52 -3.72 -0.02 2.85 16 15 C -0.14 -2.24 5.31 -26.62 -0.14 -2.38 16 16 C 0.16 2.39 1.57 -67.89 -0.11 2.28 16 17 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 18 N -0.72 -7.64 4.19 -53.77 -0.23 -7.87 16 19 C 0.52 5.54 7.10 -10.99 -0.08 5.46 16 20 O -0.53 -7.83 15.49 5.55 0.09 -7.75 16 21 C -0.12 -0.88 2.53 -91.60 -0.23 -1.11 16 22 H 0.11 0.64 8.12 -51.92 -0.42 0.22 16 23 C -0.11 -0.77 4.68 -26.42 -0.12 -0.89 16 24 C -0.03 -0.24 6.34 -27.59 -0.17 -0.41 16 25 C 0.18 1.76 7.75 -155.30 -1.20 0.56 16 26 N -0.29 -3.83 12.21 32.76 0.40 -3.43 16 27 N -0.30 -3.84 12.23 29.59 0.36 -3.47 16 28 C 0.16 1.36 12.83 -90.41 -1.16 0.20 16 29 N -0.47 -3.87 3.11 -115.59 -0.36 -4.23 16 30 C 0.11 0.69 6.14 -4.07 -0.03 0.67 16 31 H 0.03 0.31 6.58 -51.93 -0.34 -0.03 16 32 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.20 5.97 -51.93 -0.31 0.89 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.04 0.47 7.36 -51.93 -0.38 0.09 16 37 H 0.09 2.28 6.04 -51.93 -0.31 1.97 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 40 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.98 6.33 -51.93 -0.33 0.65 16 44 H 0.39 3.30 6.29 -40.82 -0.26 3.04 16 45 H 0.10 0.75 7.79 -51.93 -0.40 0.35 16 46 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.22 0.99 8.06 -52.48 -0.42 0.56 16 50 H 0.10 0.61 8.11 -51.93 -0.42 0.19 16 51 H 0.10 0.41 7.86 -51.93 -0.41 0.00 16 LS Contribution 391.18 15.07 5.90 5.90 Total: -1.00 -32.52 391.18 -9.84 -42.36 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -8.17 Total: 0.94 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -3.00 Total: -0.09 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.38 Total: -56.98 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: 0.09 Total: -7.75 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.63 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.52 -9.84 -42.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941237478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.578 kcal (2) G-P(sol) polarization free energy of solvation -32.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds