Wall clock time and date at job start Wed Apr 1 2020 04:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.49413 * 2 1 4 4 C 1.53197 * 109.49667 * 239.90393 * 2 1 3 5 5 N 1.46922 * 108.77364 * 294.67992 * 4 2 1 6 6 C 1.36945 * 120.62662 * 126.37295 * 5 4 2 7 7 H 1.08003 * 119.99274 * 207.68833 * 6 5 4 8 8 C 1.38808 * 120.00184 * 27.68376 * 6 5 4 9 9 N 1.31620 * 119.99978 * 17.36766 * 8 6 5 10 10 Si 1.86797 * 120.00082 * 197.36012 * 8 6 5 11 11 H 1.48496 * 109.47287 * 90.00432 * 10 8 6 12 12 H 1.48501 * 109.47095 * 210.00650 * 10 8 6 13 13 H 1.48498 * 109.47062 * 330.00304 * 10 8 6 14 14 C 1.46921 * 118.73923 * 306.39356 * 5 4 2 15 15 C 1.53185 * 108.77666 * 53.61109 * 14 5 4 16 16 C 1.53036 * 109.49908 * 120.06434 * 2 1 3 17 17 H 1.08997 * 109.46276 * 178.59478 * 16 2 1 18 18 N 1.46507 * 109.45893 * 298.56744 * 16 2 1 19 19 C 1.34774 * 119.99645 * 204.99790 * 18 16 2 20 20 O 1.21283 * 120.00340 * 0.02562 * 19 18 16 21 21 C 1.50700 * 119.99863 * 180.02562 * 19 18 16 22 22 H 1.09008 * 109.45383 * 299.95532 * 21 19 18 23 23 C 1.53136 * 109.45499 * 180.02562 * 21 19 18 24 24 C 1.53459 * 109.30850 * 170.52875 * 23 21 19 25 25 C 1.50807 * 108.13419 * 48.69720 * 24 23 21 26 26 N 1.29841 * 128.52369 * 164.07994 * 25 24 23 27 27 N 1.28905 * 109.48010 * 180.15106 * 26 25 24 28 28 C 1.30838 * 109.73759 * 359.97438 * 27 26 25 29 29 N 1.34693 * 107.07219 * 359.96070 * 28 27 26 30 30 C 1.46257 * 128.84388 * 180.35497 * 29 28 27 31 31 H 1.08997 * 109.46975 * 299.93246 * 1 2 3 32 32 H 1.09002 * 109.47353 * 59.93850 * 1 2 3 33 33 H 1.09004 * 109.47113 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46822 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47119 * 300.06136 * 3 2 1 36 36 H 1.09002 * 109.47260 * 60.06636 * 3 2 1 37 37 H 1.09002 * 109.58437 * 54.47025 * 4 2 1 38 38 H 1.09001 * 109.58357 * 174.89343 * 4 2 1 39 39 H 0.97001 * 119.99973 * 179.97438 * 9 8 6 40 40 H 1.09004 * 109.58766 * 173.39917 * 14 5 4 41 41 H 1.09002 * 109.58540 * 293.67560 * 14 5 4 42 42 H 1.09002 * 109.49870 * 185.41460 * 15 14 5 43 43 H 1.08998 * 109.49898 * 65.31815 * 15 14 5 44 44 H 0.96998 * 120.00166 * 24.99937 * 18 16 2 45 45 H 1.09000 * 109.50014 * 50.57793 * 23 21 19 46 46 H 1.09000 * 109.49635 * 290.48098 * 23 21 19 47 47 H 1.08995 * 109.73231 * 289.04115 * 24 23 21 48 48 H 1.09000 * 109.73406 * 168.35715 * 24 23 21 49 49 H 1.08007 * 126.46732 * 179.97438 * 28 27 26 50 50 H 1.09002 * 109.59709 * 282.66314 * 30 29 28 51 51 H 1.09002 * 109.59783 * 43.12083 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4423 0.0000 4 6 2.0413 -0.7242 -1.2494 5 7 1.6516 -2.1385 -1.1690 6 6 0.9632 -2.7318 -2.1934 7 1 0.3072 -3.5657 -1.9913 8 6 1.1083 -2.2614 -3.4912 9 7 2.1331 -1.4967 -3.8033 10 14 -0.1506 -2.7139 -4.7950 11 1 -1.2326 -1.6971 -4.8123 12 1 0.5084 -2.7583 -6.1251 13 1 -0.7281 -4.0461 -4.4841 14 6 2.0141 -2.9039 0.0316 15 6 1.5031 -2.1554 1.2665 16 6 2.0408 -0.7227 1.2485 17 1 3.1305 -0.7442 1.2354 18 7 1.5811 -0.0137 2.4453 19 6 2.2698 -0.1217 3.5987 20 8 3.2703 -0.8055 3.6459 21 6 1.7966 0.6071 4.8299 22 1 1.7797 1.6792 4.6332 23 6 2.7505 0.3175 5.9923 24 6 2.4084 1.2386 7.1711 25 6 0.9199 1.1699 7.4039 26 7 0.2458 1.5524 8.4455 27 7 -1.0078 1.3203 8.2552 28 6 -1.1830 0.7780 7.0775 29 7 0.0324 0.6697 6.5073 30 6 0.3842 0.1366 5.1915 31 1 -0.3633 0.5128 0.8906 32 1 -0.3634 0.5148 -0.8894 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1306 1.4418 -0.0005 35 1 1.6766 1.9566 -0.8894 36 1 1.6784 1.9560 0.8906 37 1 1.6007 -0.2737 -2.1388 38 1 3.1275 -0.6466 -1.2979 39 1 2.2348 -1.1682 -4.7103 40 1 1.5555 -3.8918 -0.0126 41 1 3.0979 -3.0063 0.0862 42 1 1.8482 -2.6621 2.1678 43 1 0.4133 -2.1352 1.2546 44 1 0.7810 0.5335 2.4075 45 1 3.7771 0.4995 5.6745 46 1 2.6434 -0.7226 6.3003 47 1 2.6967 2.2626 6.9338 48 1 2.9362 0.9047 8.0644 49 1 -2.1247 0.4747 6.6441 50 1 0.3604 -0.9528 5.2202 51 1 -0.3249 0.5006 4.4481 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941237478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:39 Heat of formation + Delta-G solvation = 38.668303 kcal Electronic energy + Delta-G solvation = -32035.661382 eV Core-core repulsion = 27970.784136 eV Total energy + Delta-G solvation = -4064.877245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.28886 -41.53465 -39.87620 -37.74629 -36.28562 -34.64328 -34.27619 -33.83187 -32.29762 -31.04279 -30.06033 -28.10911 -27.59148 -26.98380 -25.90170 -24.61802 -23.57037 -23.27546 -22.27611 -21.63068 -20.54777 -19.65779 -18.91298 -18.20841 -17.97709 -17.28872 -16.98914 -16.75686 -16.50223 -15.77029 -15.68828 -15.43194 -15.26738 -15.23689 -15.14878 -14.97061 -14.78685 -14.61037 -14.20355 -13.81271 -13.31526 -13.19922 -13.04337 -13.00168 -12.86491 -12.69314 -12.61978 -12.60876 -12.40546 -12.31119 -12.25250 -12.03926 -11.90566 -11.80441 -11.61968 -11.36255 -11.29887 -11.17311 -11.09687 -10.83651 -10.52131 -10.20152 -9.96912 -8.66756 -7.85793 -5.30119 0.88198 1.37709 1.47701 1.49534 1.57436 1.66607 1.86246 2.12018 2.52241 3.13529 3.29086 3.33960 3.44358 3.54150 3.67108 3.76611 3.87377 4.00662 4.02533 4.09712 4.14450 4.19538 4.29243 4.38444 4.47521 4.48615 4.58356 4.63436 4.69728 4.77383 4.83813 4.89615 4.96895 4.99287 4.99875 5.01640 5.06941 5.11180 5.14400 5.22732 5.27929 5.34964 5.38049 5.47363 5.57479 5.63437 5.73791 5.78477 5.92600 6.40686 6.57475 7.17014 7.25043 7.71852 7.87412 8.39228 9.20556 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022146 B = 0.002446 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.007016 B =11446.000227 C =11820.002049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.086 4.086 3 C -0.130 4.130 4 C 0.193 3.807 5 N -0.602 5.602 6 C -0.254 4.254 7 H 0.067 0.933 8 C -0.047 4.047 9 N -0.935 5.935 10 Si 0.961 3.039 11 H -0.283 1.283 12 H -0.300 1.300 13 H -0.271 1.271 14 C 0.142 3.858 15 C -0.126 4.126 16 C 0.177 3.823 17 H 0.054 0.946 18 N -0.703 5.703 19 C 0.525 3.475 20 O -0.570 6.570 21 C -0.112 4.112 22 H 0.133 0.867 23 C -0.102 4.102 24 C -0.028 4.028 25 C 0.177 3.823 26 N -0.339 5.339 27 N -0.353 5.353 28 C 0.169 3.831 29 N -0.469 5.469 30 C 0.114 3.886 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.051 0.949 36 H 0.080 0.920 37 H 0.061 0.939 38 H -0.017 1.017 39 H 0.249 0.751 40 H 0.055 0.945 41 H 0.001 0.999 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.412 0.588 45 H 0.095 0.905 46 H 0.067 0.933 47 H 0.114 0.886 48 H 0.110 0.890 49 H 0.259 0.741 50 H 0.101 0.899 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.699 7.620 17.518 19.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.089 4.089 3 C -0.187 4.187 4 C 0.066 3.934 5 N -0.325 5.325 6 C -0.384 4.384 7 H 0.085 0.915 8 C -0.243 4.243 9 N -0.581 5.581 10 Si 0.790 3.210 11 H -0.210 1.210 12 H -0.227 1.227 13 H -0.195 1.195 14 C 0.016 3.984 15 C -0.166 4.166 16 C 0.072 3.928 17 H 0.072 0.928 18 N -0.355 5.355 19 C 0.310 3.690 20 O -0.448 6.448 21 C -0.134 4.134 22 H 0.151 0.849 23 C -0.141 4.141 24 C -0.067 4.067 25 C -0.093 4.093 26 N -0.178 5.178 27 N -0.191 5.191 28 C -0.119 4.119 29 N -0.159 5.159 30 C -0.009 4.009 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.001 0.999 39 H 0.058 0.942 40 H 0.074 0.926 41 H 0.019 0.981 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.251 0.749 45 H 0.114 0.886 46 H 0.086 0.914 47 H 0.132 0.868 48 H 0.128 0.872 49 H 0.275 0.725 50 H 0.119 0.881 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.304 7.727 18.749 20.731 hybrid contribution -0.225 -0.814 -2.571 2.706 sum -4.530 6.913 16.179 18.168 Atomic orbital electron populations 1.21678 0.93106 1.01897 1.01098 1.21317 0.97365 0.95533 0.94644 1.21733 1.00205 0.94497 1.02305 1.20631 0.94055 0.83530 0.95167 1.44272 1.65095 1.06555 1.16594 1.19458 1.17562 1.14824 0.86548 0.91548 1.25703 0.98570 1.01179 0.98837 1.70183 1.29082 1.40070 1.18791 0.85359 0.78958 0.78309 0.78387 1.20950 1.22735 1.19540 1.20978 0.95777 0.94807 0.86885 1.22227 1.01580 0.95396 0.97409 1.20562 0.97671 0.91113 0.83489 0.92816 1.46093 1.30029 1.50168 1.09248 1.20488 0.83178 0.80758 0.84528 1.90754 1.27273 1.41621 1.85199 1.21604 0.95048 1.03361 0.93360 0.84911 1.21487 1.00394 0.99992 0.92177 1.20371 0.83155 1.02918 1.00304 1.25315 0.97107 0.99438 0.87395 1.73984 0.98935 1.22093 1.22815 1.74398 1.09826 1.18563 1.16294 1.27044 0.91833 1.01144 0.91889 1.46234 1.07130 1.46179 1.16375 1.22121 0.96458 1.00988 0.81294 0.90489 0.94206 0.92913 0.94123 0.93003 0.90146 0.92070 0.99866 0.94224 0.92616 0.98052 0.92000 0.90419 0.74933 0.88639 0.91398 0.86761 0.87183 0.72493 0.88052 0.84563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.20 7.83 71.98 0.56 -2.64 16 2 C -0.09 -2.61 0.56 -52.10 -0.03 -2.64 16 3 C -0.13 -3.30 8.31 71.98 0.60 -2.70 16 4 C 0.19 8.50 3.99 86.36 0.34 8.84 16 5 N -0.60 -28.04 2.43 -699.10 -1.70 -29.74 16 6 C -0.25 -13.11 9.59 84.03 0.81 -12.30 16 7 H 0.07 3.36 7.89 -2.91 -0.02 3.34 16 8 C -0.05 -2.53 4.91 84.86 0.42 -2.12 16 9 N -0.93 -53.38 11.19 21.65 0.24 -53.14 16 10 Si 0.96 43.02 29.59 68.60 2.03 45.04 16 11 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 12 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 13 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 14 C 0.14 5.61 6.52 86.36 0.56 6.18 16 15 C -0.13 -3.78 5.31 30.67 0.16 -3.61 16 16 C 0.18 4.89 1.57 45.02 0.07 4.96 16 17 H 0.05 1.85 7.58 -2.39 -0.02 1.83 16 18 N -0.70 -12.22 4.19 -442.41 -1.85 -14.08 16 19 C 0.52 9.46 7.10 87.66 0.62 10.08 16 20 O -0.57 -15.94 15.49 -3.04 -0.05 -15.99 16 21 C -0.11 -1.13 2.53 -11.43 -0.03 -1.16 16 22 H 0.13 0.83 8.12 -2.38 -0.02 0.81 16 23 C -0.10 -1.21 4.68 30.79 0.14 -1.07 16 24 C -0.03 -0.32 6.34 30.04 0.19 -0.13 16 25 C 0.18 3.09 7.75 138.14 1.07 4.16 16 26 N -0.34 -8.50 12.21 -50.27 -0.61 -9.11 16 27 N -0.35 -8.47 12.23 -60.31 -0.74 -9.21 16 28 C 0.17 2.43 12.83 180.27 2.31 4.75 16 29 N -0.47 -6.01 3.11 -519.61 -1.62 -7.63 16 30 C 0.11 0.83 6.14 86.49 0.53 1.36 16 31 H 0.08 1.28 6.58 -2.39 -0.02 1.27 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.62 5.97 -2.38 -0.01 1.61 16 34 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.08 1.43 7.36 -2.39 -0.02 1.42 16 37 H 0.06 3.10 6.04 -2.39 -0.01 3.09 16 38 H -0.02 -0.84 8.14 -2.39 -0.02 -0.86 16 39 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 40 H 0.06 2.17 7.93 -2.38 -0.02 2.15 16 41 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 42 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.08 2.15 6.33 -2.39 -0.02 2.14 16 44 H 0.41 4.43 6.29 -92.71 -0.58 3.84 16 45 H 0.10 1.25 7.79 -2.39 -0.02 1.24 16 46 H 0.07 0.98 8.12 -2.39 -0.02 0.96 16 47 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.26 1.15 8.06 -2.91 -0.02 1.12 16 50 H 0.10 0.79 8.11 -2.39 -0.02 0.77 16 51 H 0.14 0.16 7.86 -2.39 -0.02 0.14 16 Total: -1.00 -76.49 391.18 4.39 -72.10 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.36 Total: 9.78 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 8.34 Total: 11.96 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -6.28 Total: -122.90 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.05 Total: -15.99 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Total: -76.49 4.39 -72.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941237478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.768 kcal (2) G-P(sol) polarization free energy of solvation -76.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds