Wall clock time and date at job start Wed Apr 1 2020 04:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35312 * 126.13204 * 2 1 4 4 C 1.50696 * 126.03861 * 0.02562 * 3 2 1 5 5 C 1.50704 * 109.46879 * 84.72207 * 4 3 2 6 6 O 1.21283 * 119.99910 * 359.97438 * 5 4 3 7 7 N 1.34780 * 120.00106 * 180.02562 * 5 4 3 8 8 C 1.47076 * 120.88011 * 179.97438 * 7 5 4 9 9 C 1.53241 * 108.52223 * 231.20335 * 8 7 5 10 10 N 1.46893 * 109.34096 * 306.17400 * 9 8 7 11 11 C 1.46904 * 111.00087 * 187.25128 * 10 9 8 12 12 C 1.53495 * 114.20713 * 174.99979 * 11 10 9 13 13 N 1.47066 * 87.98658 * 87.51900 * 12 11 10 14 14 C 1.36937 * 136.06113 * 206.85859 * 13 12 11 15 15 H 1.07995 * 120.00001 * 0.02562 * 14 13 12 16 16 C 1.38817 * 120.00320 * 179.97438 * 14 13 12 17 17 N 1.31620 * 119.99557 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99975 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47441 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47001 * 120.00359 * 18 16 14 21 21 H 1.48499 * 109.47209 * 240.00202 * 18 16 14 22 22 C 1.47067 * 87.88528 * 27.11900 * 13 12 11 23 23 C 1.46908 * 111.26922 * 63.10259 * 10 9 8 24 24 C 1.47078 * 120.88067 * 0.02562 * 7 5 4 25 25 C 1.39875 * 107.92017 * 179.76379 * 3 2 1 26 26 N 1.30835 * 108.20178 * 0.23395 * 25 3 2 27 27 N 1.34947 * 126.12336 * 180.17547 * 2 1 3 28 28 C 1.46504 * 126.03657 * 359.97438 * 27 2 1 29 29 H 1.09008 * 109.47306 * 89.99566 * 1 2 3 30 30 H 1.08994 * 109.47846 * 210.00562 * 1 2 3 31 31 H 1.09007 * 109.46939 * 330.00642 * 1 2 3 32 32 H 1.08998 * 109.47249 * 324.71870 * 4 3 2 33 33 H 1.08997 * 109.47470 * 204.71448 * 4 3 2 34 34 H 1.09002 * 109.62765 * 111.49767 * 8 7 5 35 35 H 1.09000 * 109.63059 * 350.92067 * 8 7 5 36 36 H 1.09001 * 109.49071 * 186.21392 * 9 8 7 37 37 H 1.08997 * 109.48783 * 66.13233 * 9 8 7 38 38 H 1.08994 * 113.27892 * 41.93331 * 11 10 9 39 39 H 1.09005 * 113.46950 * 332.74466 * 12 11 10 40 40 H 1.08994 * 113.52293 * 202.30950 * 12 11 10 41 41 H 0.96999 * 119.99537 * 179.97438 * 17 16 14 42 42 H 1.09007 * 113.46858 * 87.65629 * 22 13 12 43 43 H 1.08993 * 113.47208 * 218.09965 * 22 13 12 44 44 H 1.08999 * 109.49341 * 56.85664 * 23 10 9 45 45 H 1.08999 * 109.48779 * 176.93248 * 23 10 9 46 46 H 1.08996 * 109.62929 * 248.50894 * 24 7 5 47 47 H 1.09004 * 109.62827 * 9.08656 * 24 7 5 48 48 H 1.07999 * 125.89747 * 180.22210 * 25 3 2 49 49 H 1.08998 * 109.47188 * 270.30897 * 28 27 2 50 50 H 1.09001 * 109.47194 * 30.31196 * 28 27 2 51 51 H 1.09003 * 109.47265 * 150.31397 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8434 2.5274 0.0005 5 6 1.5657 2.9652 1.4156 6 8 1.7262 2.1885 2.3332 7 7 1.1380 4.2195 1.6614 8 6 0.8606 4.6670 3.0347 9 6 -0.5385 5.2910 3.0701 10 7 -0.6298 6.3391 2.0449 11 6 -1.8942 7.0783 2.1589 12 6 -2.0148 8.2706 1.1998 13 7 -2.5562 7.3420 0.1961 14 6 -2.5997 7.2836 -1.1713 15 1 -2.1511 8.0701 -1.7599 16 6 -3.2195 6.2129 -1.8010 17 7 -3.7659 5.2542 -1.0836 18 14 -3.2782 6.1330 -3.6663 19 1 -2.5967 7.3238 -4.2345 20 1 -2.5909 4.9013 -4.1308 21 1 -4.6931 6.1101 -4.1166 22 6 -3.0363 6.5069 1.3074 23 6 -0.4662 5.7807 0.6959 24 6 0.9353 5.1767 0.5632 25 6 3.6335 0.6557 0.0055 26 7 3.6333 -0.6526 0.0036 27 7 2.3025 -1.0900 -0.0033 28 6 1.8537 -2.4846 -0.0071 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8898 0.5139 31 1 -0.3633 0.8901 0.5138 32 1 0.9334 2.6166 -0.5927 33 1 2.6207 3.1593 -0.4292 34 1 1.6003 5.4094 3.3343 35 1 0.8985 3.8141 3.7124 36 1 -0.7175 5.7270 4.0529 37 1 -1.2848 4.5219 2.8714 38 1 -2.1700 7.3037 3.1890 39 1 -1.0534 8.7009 0.9189 40 1 -2.7329 9.0220 1.5280 41 1 -4.1993 4.5062 -1.5236 42 1 -4.0269 6.7879 1.6652 43 1 -2.9436 5.4375 1.1183 44 1 -1.2137 5.0048 0.5303 45 1 -0.5930 6.5720 -0.0430 46 1 1.6822 5.9681 0.6247 47 1 1.0224 4.6607 -0.3930 48 1 4.5085 1.2889 0.0103 49 1 1.7375 -2.8317 1.0196 50 1 0.8977 -2.5573 -0.5256 51 1 2.5921 -3.1026 -0.5180 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941431574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:16 Heat of formation + Delta-G solvation = 109.247315 kcal Electronic energy + Delta-G solvation = -32071.967499 eV Core-core repulsion = 28010.150789 eV Total energy + Delta-G solvation = -4061.816710 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.35115 -41.34630 -40.26710 -37.72847 -34.94633 -34.63022 -33.97720 -33.66884 -32.02782 -30.63016 -29.72777 -27.77472 -27.56856 -26.41703 -26.26769 -24.80348 -24.23804 -22.46484 -21.79031 -20.82449 -20.31413 -19.46194 -18.64723 -18.03489 -17.46599 -16.99668 -16.85211 -16.59519 -16.41201 -16.27866 -15.93689 -15.38115 -15.29135 -15.16025 -14.79722 -14.59985 -14.45417 -14.29087 -14.12124 -13.96133 -13.70065 -13.33195 -13.27542 -13.21449 -13.14678 -12.92819 -12.84071 -12.69863 -12.61533 -12.40099 -12.15646 -12.12598 -11.95830 -11.84490 -11.58259 -11.51761 -11.16145 -10.82648 -10.71523 -10.18744 -9.65571 -9.25987 -9.04290 -8.74494 -7.82905 -5.15490 0.87380 1.48460 1.51316 1.59347 1.61623 1.69738 1.72657 2.22000 2.51721 3.01357 3.39816 3.56515 3.59237 3.73711 3.75179 3.92105 4.03464 4.06765 4.17478 4.21797 4.35264 4.36198 4.39457 4.41201 4.44961 4.57226 4.61511 4.62463 4.64169 4.67066 4.75251 4.75758 4.87161 4.91085 4.92728 4.95464 4.98623 5.08279 5.16590 5.22372 5.24793 5.44527 5.49289 5.57835 5.65745 5.69954 5.97042 6.11012 6.22114 6.36212 6.53005 6.72037 6.97526 7.26080 7.68203 8.68714 9.33387 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010850 B = 0.003429 C = 0.002856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.098546 B = 8162.613228 C = 9802.714166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.239 4.239 4 C -0.053 4.053 5 C 0.515 3.485 6 O -0.579 6.579 7 N -0.612 5.612 8 C 0.123 3.877 9 C 0.046 3.954 10 N -0.502 5.502 11 C 0.051 3.949 12 C 0.124 3.876 13 N -0.627 5.627 14 C -0.215 4.215 15 H 0.084 0.916 16 C -0.053 4.053 17 N -0.946 5.946 18 Si 0.963 3.037 19 H -0.265 1.265 20 H -0.290 1.290 21 H -0.303 1.303 22 C 0.123 3.877 23 C 0.058 3.942 24 C 0.116 3.884 25 C 0.055 3.945 26 N -0.332 5.332 27 N -0.381 5.381 28 C 0.092 3.908 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.010 0.990 38 H 0.113 0.887 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.244 0.756 42 H 0.009 0.991 43 H 0.038 0.962 44 H 0.011 0.989 45 H 0.097 0.903 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.201 0.799 49 H 0.080 0.920 50 H 0.108 0.892 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.000 -6.846 4.418 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.037 4.037 3 C -0.251 4.251 4 C -0.094 4.094 5 C 0.305 3.695 6 O -0.459 6.459 7 N -0.345 5.345 8 C 0.000 4.000 9 C -0.082 4.082 10 N -0.225 5.225 11 C -0.059 4.059 12 C -0.002 4.002 13 N -0.353 5.353 14 C -0.343 4.343 15 H 0.101 0.899 16 C -0.247 4.247 17 N -0.595 5.595 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.217 1.217 21 H -0.231 1.231 22 C -0.005 4.005 23 C -0.071 4.071 24 C -0.007 4.007 25 C -0.130 4.130 26 N -0.154 5.154 27 N -0.163 5.163 28 C -0.048 4.048 29 H 0.114 0.886 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.143 0.857 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.029 0.971 38 H 0.131 0.869 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.026 0.974 43 H 0.056 0.944 44 H 0.029 0.971 45 H 0.115 0.885 46 H 0.108 0.892 47 H 0.114 0.886 48 H 0.218 0.782 49 H 0.099 0.901 50 H 0.127 0.873 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.101 -8.269 4.647 15.375 hybrid contribution -2.039 -0.012 -1.151 2.341 sum 10.062 -8.281 3.496 13.492 Atomic orbital electron populations 1.20467 0.86192 1.04008 1.04092 1.21158 0.95311 0.87353 0.99829 1.19403 0.92885 0.94515 1.18262 1.19930 1.03990 0.92663 0.92822 1.21106 0.75649 0.80628 0.92116 1.90633 1.54290 1.53278 1.47739 1.48338 1.65611 1.11907 1.08666 1.21647 0.96008 0.99147 0.83153 1.22456 0.95906 0.92857 0.97006 1.62033 1.31563 1.25153 1.03774 1.23282 0.88477 0.95834 0.98296 1.22636 0.97113 0.92921 0.87506 1.46024 1.65087 1.24201 1.00029 1.19210 1.29942 1.04809 0.80351 0.89862 1.25378 1.00923 0.97345 1.01068 1.70025 1.43003 1.11965 1.34549 0.85231 0.76524 0.77719 0.81248 1.18960 1.21742 1.23064 1.22653 0.94386 0.96554 0.86886 1.22384 0.94304 0.99037 0.91362 1.22054 0.97040 0.92017 0.89558 1.24051 0.98189 0.92085 0.98662 1.77217 0.97861 1.13531 1.26746 1.48639 1.03393 1.07100 1.57207 1.22141 1.02265 0.76137 1.04281 0.88644 0.89397 0.91543 0.88247 0.85722 0.89370 0.89970 0.87509 0.97143 0.86942 0.92576 0.93317 0.94721 0.97375 0.94366 0.97104 0.88494 0.89214 0.88619 0.78215 0.90148 0.87339 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 9.59 71.24 0.68 -1.31 16 2 C 0.09 2.44 6.93 41.40 0.29 2.73 16 3 C -0.24 -6.56 4.59 -20.14 -0.09 -6.65 16 4 C -0.05 -1.33 4.10 29.10 0.12 -1.21 16 5 C 0.52 15.60 7.70 87.66 0.68 16.28 16 6 O -0.58 -21.47 15.49 -3.04 -0.05 -21.52 16 7 N -0.61 -17.38 3.01 -818.03 -2.46 -19.84 16 8 C 0.12 3.28 6.60 86.35 0.57 3.85 16 9 C 0.05 1.30 5.61 86.39 0.48 1.79 16 10 N -0.50 -15.91 4.77 -869.38 -4.15 -20.06 16 11 C 0.05 1.73 4.37 45.39 0.20 1.93 16 12 C 0.12 4.53 7.94 83.18 0.66 5.19 16 13 N -0.63 -29.21 2.17 -738.53 -1.60 -30.82 16 14 C -0.22 -11.01 9.53 84.03 0.80 -10.20 16 15 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 16 C -0.05 -2.83 5.50 84.86 0.47 -2.36 16 17 N -0.95 -53.71 11.51 21.65 0.25 -53.46 16 18 Si 0.96 43.01 29.55 68.60 2.03 45.04 16 19 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 20 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 21 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 22 C 0.12 5.48 6.48 83.18 0.54 6.02 16 23 C 0.06 2.07 4.34 86.37 0.38 2.45 16 24 C 0.12 3.19 6.50 86.33 0.56 3.75 16 25 C 0.06 1.48 11.96 85.24 1.02 2.50 16 26 N -0.33 -9.64 12.58 -57.02 -0.72 -10.36 16 27 N -0.38 -9.71 4.01 -356.02 -1.43 -11.14 16 28 C 0.09 1.43 11.09 127.77 1.42 2.85 16 29 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.09 1.59 7.74 -2.39 -0.02 1.57 16 31 H 0.07 1.76 7.89 -2.38 -0.02 1.74 16 32 H 0.10 2.47 7.54 -2.39 -0.02 2.46 16 33 H 0.12 2.41 8.00 -2.39 -0.02 2.39 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.33 7.06 -2.39 -0.02 2.31 16 36 H 0.11 2.42 8.02 -2.39 -0.02 2.40 16 37 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.11 3.12 8.01 -2.39 -0.02 3.11 16 39 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.24 13.66 8.31 -92.71 -0.77 12.89 16 42 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 43 H 0.04 1.97 5.67 -2.39 -0.01 1.95 16 44 H 0.01 0.48 6.57 -2.39 -0.02 0.47 16 45 H 0.10 4.01 5.15 -2.39 -0.01 4.00 16 46 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.10 2.40 6.02 -2.39 -0.01 2.38 16 48 H 0.20 4.08 8.06 -2.91 -0.02 4.05 16 49 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.11 1.16 7.68 -2.39 -0.02 1.14 16 51 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -72.30 400.06 1.56 -70.74 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.93 Total: 23.80 kcal Atomic # 6 Polarization: 18.83 SS G_CDS: 8.77 Total: 27.60 kcal Atomic # 7 Polarization: -135.56 SS G_CDS: -10.11 Total: -145.66 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -72.30 1.56 -70.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941431574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.989 kcal (2) G-P(sol) polarization free energy of solvation -72.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds