Wall clock time and date at job start Wed Apr 1 2020 04:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39870 * 125.89456 * 2 1 4 4 C 1.35316 * 107.91864 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.12653 * 179.97438 * 4 3 2 6 6 N 1.34948 * 107.74659 * 359.97438 * 4 3 2 7 7 C 1.46496 * 126.03619 * 179.97438 * 6 4 3 8 8 C 1.50704 * 109.46976 * 90.00554 * 7 6 4 9 9 O 1.21283 * 119.99910 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00106 * 180.02562 * 8 7 6 11 11 C 1.47076 * 120.88011 * 179.97438 * 10 8 7 12 12 C 1.53241 * 108.52223 * 231.20335 * 11 10 8 13 13 N 1.46893 * 109.34096 * 306.17400 * 12 11 10 14 14 C 1.46904 * 111.00087 * 187.25128 * 13 12 11 15 15 C 1.53495 * 114.20713 * 174.99979 * 14 13 12 16 16 N 1.47066 * 87.98658 * 87.51900 * 15 14 13 17 17 C 1.36937 * 136.06113 * 206.85859 * 16 15 14 18 18 H 1.07995 * 120.00001 * 0.02562 * 17 16 15 19 19 C 1.38817 * 120.00320 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99557 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46896 * 90.00557 * 21 19 17 23 23 H 1.48506 * 109.46723 * 210.00327 * 21 19 17 24 24 H 1.48496 * 109.47378 * 330.00014 * 21 19 17 25 25 C 1.47067 * 87.88528 * 27.11900 * 16 15 14 26 26 C 1.46908 * 111.26922 * 63.10259 * 13 12 11 27 27 C 1.47078 * 120.88067 * 0.02562 * 10 8 7 28 28 N 1.30834 * 125.89958 * 180.30451 * 2 1 3 29 29 H 1.09001 * 109.47423 * 90.00220 * 1 2 3 30 30 H 1.09000 * 109.46899 * 210.00169 * 1 2 3 31 31 H 1.09000 * 109.47760 * 330.00066 * 1 2 3 32 32 H 1.08003 * 126.03877 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.46827 * 270.01877 * 5 4 3 34 34 H 1.08995 * 109.46809 * 30.01728 * 5 4 3 35 35 H 1.09000 * 109.46903 * 150.02081 * 5 4 3 36 36 H 1.08998 * 109.47241 * 330.00163 * 7 6 4 37 37 H 1.08997 * 109.47381 * 209.99800 * 7 6 4 38 38 H 1.09002 * 109.62765 * 111.49767 * 11 10 8 39 39 H 1.09000 * 109.63059 * 350.92067 * 11 10 8 40 40 H 1.09001 * 109.49071 * 186.21392 * 12 11 10 41 41 H 1.08997 * 109.48783 * 66.13233 * 12 11 10 42 42 H 1.08994 * 113.27892 * 41.93331 * 14 13 12 43 43 H 1.09005 * 113.46950 * 332.74466 * 15 14 13 44 44 H 1.08994 * 113.52293 * 202.30950 * 15 14 13 45 45 H 0.96999 * 119.99537 * 179.97438 * 20 19 17 46 46 H 1.09007 * 113.46858 * 87.65629 * 25 16 15 47 47 H 1.08993 * 113.47208 * 218.09965 * 25 16 15 48 48 H 1.08999 * 109.49341 * 56.85664 * 26 13 12 49 49 H 1.08999 * 109.48779 * 176.93248 * 26 13 12 50 50 H 1.08996 * 109.62929 * 248.50894 * 27 10 8 51 51 H 1.09004 * 109.62827 * 9.08656 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0006 5 6 4.8350 1.5991 -0.0013 6 7 3.6088 -0.6340 -0.0004 7 6 4.7899 -1.5006 -0.0013 8 6 5.1962 -1.7976 1.4192 9 8 4.5618 -1.3309 2.3415 10 7 6.2651 -2.5810 1.6646 11 6 6.6791 -2.8829 3.0433 12 6 8.1737 -2.5743 3.1814 13 7 8.9173 -3.2929 2.1381 14 6 10.3666 -3.1620 2.3396 15 6 11.2150 -3.9850 1.3604 16 7 11.1603 -2.8437 0.4346 17 6 11.2337 -2.6697 -0.9217 18 1 11.3644 -3.5240 -1.5693 19 6 11.1390 -1.3955 -1.4643 20 7 10.9792 -0.3544 -0.6749 21 14 11.2385 -1.1584 -3.3145 22 1 9.8751 -1.2383 -3.8976 23 1 11.8270 0.1721 -3.6120 24 1 12.0923 -2.2205 -3.9044 25 6 10.9987 -1.9704 1.6069 26 6 8.5289 -2.8367 0.7968 27 6 7.0492 -3.1556 0.5610 28 7 2.2742 -1.0598 -0.0056 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.9921 2.1599 -0.0004 33 1 5.1285 1.8122 -1.0292 34 1 4.6078 2.5330 0.5127 35 1 5.6515 1.0911 0.5119 36 1 5.6089 -0.9980 -0.5160 37 1 4.5560 -2.4332 -0.5147 38 1 6.5017 -3.9371 3.2563 39 1 6.1117 -2.2653 3.7396 40 1 8.5221 -2.8955 4.1631 41 1 8.3354 -1.5022 3.0704 42 1 10.6670 -3.2597 3.3827 43 1 10.7060 -4.8729 0.9852 44 1 12.2188 -4.1984 1.7276 45 1 10.9135 0.5360 -1.0540 46 1 11.9448 -1.6465 2.0407 47 1 10.3059 -1.1455 1.4415 48 1 8.6857 -1.7608 0.7189 49 1 9.1351 -3.3481 0.0491 50 1 6.9074 -4.2360 0.5348 51 1 6.7267 -2.7182 -0.3839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941480173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:29 Heat of formation + Delta-G solvation = 130.924889 kcal Electronic energy + Delta-G solvation = -32040.967816 eV Core-core repulsion = 27980.091117 eV Total energy + Delta-G solvation = -4060.876700 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.35764 -40.14735 -39.00482 -36.53035 -34.16995 -33.53081 -32.18992 -31.95583 -30.91818 -29.80419 -28.24528 -27.03932 -26.64626 -25.51836 -24.70359 -23.45532 -22.83956 -21.28343 -20.39725 -19.69095 -19.08691 -18.44566 -17.34707 -16.80739 -16.68360 -15.81966 -15.53909 -15.14825 -15.01353 -14.89059 -14.47050 -14.21234 -13.89657 -13.81589 -13.76867 -13.51765 -13.29523 -13.10582 -12.98485 -12.84213 -12.66243 -12.51899 -12.27351 -12.10311 -11.89075 -11.81484 -11.45329 -11.33307 -11.10036 -11.01058 -10.88398 -10.62836 -10.58814 -10.48248 -10.16381 -10.00134 -9.92294 -9.47412 -8.98877 -8.90923 -8.59516 -8.43262 -7.66770 -6.94050 -5.90262 -3.23338 1.81984 2.33805 2.54174 2.81785 3.09652 3.27015 3.34934 3.35852 4.26808 4.33706 4.37383 4.44482 4.60731 4.88891 4.94245 5.05713 5.08576 5.14964 5.28004 5.30539 5.33613 5.38160 5.41817 5.45376 5.52115 5.56769 5.62411 5.69025 5.73142 5.78024 5.81021 5.85700 5.91064 6.03389 6.09575 6.22353 6.22972 6.36935 6.45905 6.54924 6.64575 6.72003 6.85320 6.98576 7.03893 7.11861 7.35436 7.40826 7.59860 7.72703 7.78407 7.84185 8.11065 8.90338 9.57007 10.51514 11.25888 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003354 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.973692 B = 8346.891036 C = 9985.817055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.072 3.928 3 C -0.277 4.277 4 C 0.101 3.899 5 C -0.096 4.096 6 N -0.354 5.354 7 C 0.114 3.886 8 C 0.500 3.500 9 O -0.532 6.532 10 N -0.605 5.605 11 C 0.122 3.878 12 C 0.042 3.958 13 N -0.511 5.511 14 C 0.028 3.972 15 C 0.121 3.879 16 N -0.606 5.606 17 C -0.219 4.219 18 H 0.081 0.919 19 C -0.003 4.003 20 N -0.916 5.916 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.124 3.876 26 C 0.042 3.958 27 C 0.104 3.896 28 N -0.291 5.291 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.073 0.927 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.036 0.964 45 H 0.253 0.747 46 H 0.024 0.976 47 H 0.072 0.928 48 H 0.057 0.943 49 H 0.126 0.874 50 H 0.075 0.925 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.857 -0.710 3.485 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.095 4.095 3 C -0.306 4.306 4 C -0.025 4.025 5 C -0.154 4.154 6 N -0.136 5.136 7 C -0.011 4.011 8 C 0.286 3.714 9 O -0.409 6.409 10 N -0.339 5.339 11 C -0.001 4.001 12 C -0.087 4.087 13 N -0.235 5.235 14 C -0.082 4.082 15 C -0.006 4.006 16 N -0.333 5.333 17 C -0.346 4.346 18 H 0.099 0.901 19 C -0.200 4.200 20 N -0.563 5.563 21 Si 0.737 3.263 22 H -0.215 1.215 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.003 4.003 26 C -0.086 4.086 27 C -0.019 4.019 28 N -0.113 5.113 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.163 0.837 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.142 0.858 38 H 0.091 0.909 39 H 0.107 0.893 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.099 0.901 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.042 0.958 47 H 0.090 0.910 48 H 0.075 0.925 49 H 0.144 0.856 50 H 0.093 0.907 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.153 -2.130 3.677 13.822 hybrid contribution 0.816 1.928 -1.064 2.349 sum -12.336 -0.202 2.613 12.612 Atomic orbital electron populations 1.20134 0.86863 1.03115 1.02645 1.22256 0.96767 0.90880 0.99602 1.21027 0.90886 0.99583 1.19075 1.21091 0.97430 0.84313 0.99703 1.20492 0.93154 0.98378 1.03421 1.47853 1.04566 1.03745 1.57397 1.21516 0.86143 0.97264 0.96211 1.20694 0.80552 0.78939 0.91212 1.90726 1.53005 1.51510 1.45613 1.48225 1.28305 1.48969 1.08422 1.21690 0.94527 1.01297 0.82580 1.22405 0.92949 0.97091 0.96296 1.61951 1.04057 1.54861 1.02583 1.23388 0.87187 1.00149 0.97507 1.22515 0.95679 0.92894 0.89478 1.45808 1.84605 1.02535 1.00334 1.18895 1.43470 0.92891 0.79307 0.90143 1.24752 1.02364 0.95289 0.97632 1.69830 1.55439 0.97948 1.33083 0.86211 0.77790 0.77294 0.85031 1.21461 1.21694 1.20668 1.22695 0.97244 0.94582 0.85777 1.22720 0.92286 1.01689 0.91859 1.22199 0.92598 0.98866 0.88221 1.77278 0.85942 1.22673 1.25363 0.90749 0.91105 0.90593 0.83735 0.89918 0.89499 0.91047 0.85820 0.85848 0.90886 0.89256 0.90073 0.94452 0.90138 0.93445 0.94613 0.93691 0.95783 0.91033 0.92514 0.85648 0.90693 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.45 36.01 0.38 -0.29 16 2 C 0.07 1.00 7.22 -82.41 -0.59 0.40 16 3 C -0.28 -3.70 10.65 -40.01 -0.43 -4.13 16 4 C 0.10 1.43 6.93 -82.26 -0.57 0.86 16 5 C -0.10 -1.11 9.90 36.01 0.36 -0.75 16 6 N -0.35 -5.43 3.10 -58.31 -0.18 -5.61 16 7 C 0.11 1.53 4.91 -5.19 -0.03 1.51 16 8 C 0.50 7.83 7.78 -10.98 -0.09 7.75 16 9 O -0.53 -10.20 15.88 5.56 0.09 -10.11 16 10 N -0.60 -8.75 3.01 -172.49 -0.52 -9.27 16 11 C 0.12 1.68 6.60 -3.60 -0.02 1.65 16 12 C 0.04 0.60 5.61 -3.70 -0.02 0.57 16 13 N -0.51 -8.22 4.77 -226.14 -1.08 -9.30 16 14 C 0.03 0.48 4.37 -67.59 -0.30 0.18 16 15 C 0.12 2.27 7.94 -8.51 -0.07 2.21 16 16 N -0.61 -13.87 2.17 -184.78 -0.40 -14.27 16 17 C -0.22 -5.48 9.53 -15.06 -0.14 -5.63 16 18 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 19 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 20 N -0.92 -24.79 11.51 55.49 0.64 -24.15 16 21 Si 0.91 20.46 29.55 -169.99 -5.02 15.44 16 22 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.12 2.68 6.48 -8.51 -0.06 2.62 16 26 C 0.04 0.74 4.34 -3.72 -0.02 0.72 16 27 C 0.10 1.44 6.50 -3.63 -0.02 1.42 16 28 N -0.29 -4.72 12.58 33.67 0.42 -4.30 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.14 1.54 8.06 -52.48 -0.42 1.12 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.90 7.72 -51.93 -0.40 0.50 16 36 H 0.12 1.46 7.18 -51.93 -0.37 1.08 16 37 H 0.12 1.43 8.00 -51.93 -0.42 1.01 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.09 1.29 7.06 -51.93 -0.37 0.92 16 40 H 0.08 1.00 8.02 -51.93 -0.42 0.59 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.22 8.01 -51.93 -0.42 0.80 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 46 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 47 H 0.07 1.73 5.67 -51.93 -0.29 1.43 16 48 H 0.06 1.19 6.57 -51.93 -0.34 0.85 16 49 H 0.13 2.53 5.15 -51.93 -0.27 2.26 16 50 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.08 0.98 6.02 -51.93 -0.31 0.66 16 LS Contribution 401.75 15.07 6.05 6.05 Total: -1.00 -32.18 401.75 -9.93 -42.11 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -8.22 Total: 4.47 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -1.71 Total: 8.93 kcal Atomic # 7 Polarization: -65.78 SS G_CDS: -1.12 Total: -66.89 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -32.18 -9.93 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941480173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.035 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds