Wall clock time and date at job start Wed Apr 1 2020 04:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39870 * 125.89456 * 2 1 4 4 C 1.35316 * 107.91864 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.12653 * 179.97438 * 4 3 2 6 6 N 1.34948 * 107.74659 * 359.97438 * 4 3 2 7 7 C 1.46496 * 126.03619 * 179.97438 * 6 4 3 8 8 C 1.50704 * 109.46976 * 90.00554 * 7 6 4 9 9 O 1.21283 * 119.99910 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00106 * 180.02562 * 8 7 6 11 11 C 1.47076 * 120.88011 * 179.97438 * 10 8 7 12 12 C 1.53241 * 108.52223 * 231.20335 * 11 10 8 13 13 N 1.46893 * 109.34096 * 306.17400 * 12 11 10 14 14 C 1.46904 * 111.00087 * 187.25128 * 13 12 11 15 15 C 1.53495 * 114.20713 * 174.99979 * 14 13 12 16 16 N 1.47066 * 87.98658 * 87.51900 * 15 14 13 17 17 C 1.36937 * 136.06113 * 206.85859 * 16 15 14 18 18 H 1.07995 * 120.00001 * 0.02562 * 17 16 15 19 19 C 1.38817 * 120.00320 * 179.97438 * 17 16 15 20 20 N 1.31620 * 119.99557 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99975 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.46896 * 90.00557 * 21 19 17 23 23 H 1.48506 * 109.46723 * 210.00327 * 21 19 17 24 24 H 1.48496 * 109.47378 * 330.00014 * 21 19 17 25 25 C 1.47067 * 87.88528 * 27.11900 * 16 15 14 26 26 C 1.46908 * 111.26922 * 63.10259 * 13 12 11 27 27 C 1.47078 * 120.88067 * 0.02562 * 10 8 7 28 28 N 1.30834 * 125.89958 * 180.30451 * 2 1 3 29 29 H 1.09001 * 109.47423 * 90.00220 * 1 2 3 30 30 H 1.09000 * 109.46899 * 210.00169 * 1 2 3 31 31 H 1.09000 * 109.47760 * 330.00066 * 1 2 3 32 32 H 1.08003 * 126.03877 * 359.97438 * 3 2 1 33 33 H 1.08997 * 109.46827 * 270.01877 * 5 4 3 34 34 H 1.08995 * 109.46809 * 30.01728 * 5 4 3 35 35 H 1.09000 * 109.46903 * 150.02081 * 5 4 3 36 36 H 1.08998 * 109.47241 * 330.00163 * 7 6 4 37 37 H 1.08997 * 109.47381 * 209.99800 * 7 6 4 38 38 H 1.09002 * 109.62765 * 111.49767 * 11 10 8 39 39 H 1.09000 * 109.63059 * 350.92067 * 11 10 8 40 40 H 1.09001 * 109.49071 * 186.21392 * 12 11 10 41 41 H 1.08997 * 109.48783 * 66.13233 * 12 11 10 42 42 H 1.08994 * 113.27892 * 41.93331 * 14 13 12 43 43 H 1.09005 * 113.46950 * 332.74466 * 15 14 13 44 44 H 1.08994 * 113.52293 * 202.30950 * 15 14 13 45 45 H 0.96999 * 119.99537 * 179.97438 * 20 19 17 46 46 H 1.09007 * 113.46858 * 87.65629 * 25 16 15 47 47 H 1.08993 * 113.47208 * 218.09965 * 25 16 15 48 48 H 1.08999 * 109.49341 * 56.85664 * 26 13 12 49 49 H 1.08999 * 109.48779 * 176.93248 * 26 13 12 50 50 H 1.08996 * 109.62929 * 248.50894 * 27 10 8 51 51 H 1.09004 * 109.62827 * 9.08656 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7155 -0.0006 5 6 4.8350 1.5991 -0.0013 6 7 3.6088 -0.6340 -0.0004 7 6 4.7899 -1.5006 -0.0013 8 6 5.1962 -1.7976 1.4192 9 8 4.5618 -1.3309 2.3415 10 7 6.2651 -2.5810 1.6646 11 6 6.6791 -2.8829 3.0433 12 6 8.1737 -2.5743 3.1814 13 7 8.9173 -3.2929 2.1381 14 6 10.3666 -3.1620 2.3396 15 6 11.2150 -3.9850 1.3604 16 7 11.1603 -2.8437 0.4346 17 6 11.2337 -2.6697 -0.9217 18 1 11.3644 -3.5240 -1.5693 19 6 11.1390 -1.3955 -1.4643 20 7 10.9792 -0.3544 -0.6749 21 14 11.2385 -1.1584 -3.3145 22 1 9.8751 -1.2383 -3.8976 23 1 11.8270 0.1721 -3.6120 24 1 12.0923 -2.2205 -3.9044 25 6 10.9987 -1.9704 1.6069 26 6 8.5289 -2.8367 0.7968 27 6 7.0492 -3.1556 0.5610 28 7 2.2742 -1.0598 -0.0056 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5138 32 1 1.9921 2.1599 -0.0004 33 1 5.1285 1.8122 -1.0292 34 1 4.6078 2.5330 0.5127 35 1 5.6515 1.0911 0.5119 36 1 5.6089 -0.9980 -0.5160 37 1 4.5560 -2.4332 -0.5147 38 1 6.5017 -3.9371 3.2563 39 1 6.1117 -2.2653 3.7396 40 1 8.5221 -2.8955 4.1631 41 1 8.3354 -1.5022 3.0704 42 1 10.6670 -3.2597 3.3827 43 1 10.7060 -4.8729 0.9852 44 1 12.2188 -4.1984 1.7276 45 1 10.9135 0.5360 -1.0540 46 1 11.9448 -1.6465 2.0407 47 1 10.3059 -1.1455 1.4415 48 1 8.6857 -1.7608 0.7189 49 1 9.1351 -3.3481 0.0491 50 1 6.9074 -4.2360 0.5348 51 1 6.7267 -2.7182 -0.3839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941480173.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:28 Heat of formation + Delta-G solvation = 110.459097 kcal Electronic energy + Delta-G solvation = -32041.855280 eV Core-core repulsion = 27980.091117 eV Total energy + Delta-G solvation = -4061.764163 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.41338 -41.45886 -40.42802 -37.90459 -35.26674 -34.93570 -33.86578 -33.07208 -32.12352 -30.81732 -29.84483 -28.11110 -27.90349 -26.68675 -26.33221 -24.89441 -24.32302 -22.59062 -21.44094 -20.93953 -20.35588 -19.71295 -18.76296 -18.38101 -17.82157 -17.10208 -16.87922 -16.70455 -16.45254 -16.04775 -15.91115 -15.45196 -15.36711 -14.97074 -14.78752 -14.73675 -14.49300 -14.33827 -14.16816 -14.11950 -13.87015 -13.44051 -13.28234 -13.18625 -13.13194 -13.08405 -12.83714 -12.77990 -12.74061 -12.49294 -12.27241 -12.23028 -12.04475 -11.88750 -11.60584 -11.51776 -11.23345 -11.17933 -10.76814 -10.05654 -9.86323 -9.47681 -9.11394 -8.78163 -7.85659 -5.18457 0.75500 1.30566 1.34011 1.46883 1.49722 1.56262 1.81614 1.95279 2.49122 2.92745 3.23609 3.36693 3.45650 3.53235 3.64508 3.86318 3.88767 3.95035 3.98225 4.05818 4.15637 4.23373 4.30574 4.47005 4.50501 4.53956 4.57686 4.63704 4.67395 4.72526 4.77324 4.82825 4.87607 4.88970 4.89410 4.91937 5.04574 5.05621 5.08608 5.20656 5.27753 5.32115 5.39619 5.52481 5.55814 5.76145 5.93880 5.96100 6.12263 6.21892 6.35168 6.73985 6.90001 6.94599 7.65305 8.65666 9.30155 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011431 B = 0.003354 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.973692 B = 8346.891036 C = 9985.817055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.064 3.936 3 C -0.285 4.285 4 C 0.085 3.915 5 C -0.092 4.092 6 N -0.368 5.368 7 C 0.114 3.886 8 C 0.500 3.500 9 O -0.571 6.571 10 N -0.603 5.603 11 C 0.123 3.877 12 C 0.047 3.953 13 N -0.502 5.502 14 C 0.052 3.948 15 C 0.123 3.877 16 N -0.628 5.628 17 C -0.217 4.217 18 H 0.083 0.917 19 C -0.054 4.054 20 N -0.945 5.945 21 Si 0.963 3.037 22 H -0.280 1.280 23 H -0.303 1.303 24 H -0.274 1.274 25 C 0.123 3.877 26 C 0.057 3.943 27 C 0.112 3.888 28 N -0.330 5.330 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.170 0.830 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.136 0.864 37 H 0.142 0.858 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.013 0.987 42 H 0.114 0.886 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.244 0.756 46 H 0.009 0.991 47 H 0.039 0.961 48 H 0.014 0.986 49 H 0.100 0.900 50 H 0.096 0.904 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 -1.884 3.513 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.103 4.103 3 C -0.314 4.314 4 C -0.041 4.041 5 C -0.150 4.150 6 N -0.150 5.150 7 C -0.011 4.011 8 C 0.287 3.713 9 O -0.451 6.451 10 N -0.336 5.336 11 C 0.001 3.999 12 C -0.082 4.082 13 N -0.225 5.225 14 C -0.058 4.058 15 C -0.002 4.002 16 N -0.354 5.354 17 C -0.345 4.345 18 H 0.101 0.899 19 C -0.247 4.247 20 N -0.594 5.594 21 Si 0.793 3.207 22 H -0.207 1.207 23 H -0.230 1.230 24 H -0.200 1.200 25 C -0.005 4.005 26 C -0.071 4.071 27 C -0.011 4.011 28 N -0.152 5.152 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.187 0.813 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.073 0.927 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.031 0.969 42 H 0.132 0.868 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.027 0.973 47 H 0.057 0.943 48 H 0.032 0.968 49 H 0.118 0.882 50 H 0.114 0.886 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.114 -3.356 3.710 14.974 hybrid contribution 1.145 2.279 -1.021 2.747 sum -12.969 -1.077 2.689 13.289 Atomic orbital electron populations 1.20285 0.84163 1.04058 1.04024 1.22989 0.98586 0.90551 0.98135 1.21438 0.90601 1.00746 1.18590 1.21605 0.98658 0.84364 0.99515 1.20536 0.91713 0.98397 1.04343 1.48017 1.04636 1.04314 1.58008 1.21628 0.86316 0.98240 0.94904 1.21062 0.80246 0.78205 0.91746 1.90699 1.54410 1.53023 1.46949 1.48289 1.27908 1.48461 1.08930 1.21735 0.93738 1.02254 0.82170 1.22454 0.93248 0.95498 0.96958 1.62024 1.03513 1.54516 1.02473 1.23278 0.87524 0.96379 0.98643 1.22640 0.96682 0.92175 0.88701 1.46041 1.84584 1.04564 1.00227 1.19161 1.41673 0.92840 0.80779 0.89905 1.25386 1.03156 0.95238 1.00962 1.70014 1.57307 0.97818 1.34276 0.85305 0.77895 0.76404 0.81114 1.20683 1.23049 1.19960 1.22661 0.96234 0.95174 0.86448 1.22391 0.94259 0.98492 0.91983 1.22173 0.90080 1.00120 0.88703 1.77211 0.86659 1.24193 1.27183 0.89040 0.91262 0.88514 0.81296 0.88442 0.87873 0.92736 0.84607 0.84042 0.88929 0.89898 0.87148 0.96890 0.86793 0.92546 0.93288 0.94689 0.97289 0.94289 0.96779 0.88155 0.88612 0.88690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.17 10.45 71.24 0.74 -0.43 16 2 C 0.06 1.72 7.22 43.10 0.31 2.03 16 3 C -0.29 -7.32 10.65 21.99 0.23 -7.09 16 4 C 0.09 2.37 6.93 41.41 0.29 2.66 16 5 C -0.09 -2.08 9.90 71.24 0.71 -1.38 16 6 N -0.37 -11.22 3.10 -338.41 -1.05 -12.27 16 7 C 0.11 3.03 4.91 85.64 0.42 3.45 16 8 C 0.50 15.58 7.78 87.66 0.68 16.26 16 9 O -0.57 -22.14 15.88 -3.04 -0.05 -22.19 16 10 N -0.60 -16.89 3.01 -818.03 -2.46 -19.36 16 11 C 0.12 3.21 6.60 86.35 0.57 3.78 16 12 C 0.05 1.28 5.61 86.39 0.48 1.76 16 13 N -0.50 -15.38 4.77 -869.38 -4.15 -19.53 16 14 C 0.05 1.70 4.37 45.39 0.20 1.90 16 15 C 0.12 4.43 7.94 83.18 0.66 5.09 16 16 N -0.63 -28.77 2.17 -738.53 -1.60 -30.37 16 17 C -0.22 -10.93 9.53 84.03 0.80 -10.13 16 18 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 19 C -0.05 -2.80 5.50 84.86 0.47 -2.34 16 20 N -0.95 -52.90 11.51 21.65 0.25 -52.65 16 21 Si 0.96 42.52 29.55 68.60 2.03 44.55 16 22 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 C 0.12 5.36 6.48 83.18 0.54 5.90 16 26 C 0.06 1.99 4.34 86.37 0.38 2.36 16 27 C 0.11 2.95 6.50 86.33 0.56 3.52 16 28 N -0.33 -10.65 12.58 -47.39 -0.60 -11.25 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.17 3.28 8.06 -2.91 -0.02 3.26 16 33 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.41 7.72 -2.39 -0.02 1.39 16 36 H 0.14 3.18 7.18 -2.39 -0.02 3.17 16 37 H 0.14 3.13 8.00 -2.39 -0.02 3.12 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.08 2.33 7.06 -2.39 -0.02 2.31 16 40 H 0.11 2.39 8.02 -2.39 -0.02 2.37 16 41 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.11 3.06 8.01 -2.39 -0.02 3.04 16 43 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.24 13.55 8.31 -92.71 -0.77 12.78 16 46 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 47 H 0.04 1.96 5.67 -2.39 -0.01 1.95 16 48 H 0.01 0.61 6.57 -2.39 -0.02 0.59 16 49 H 0.10 4.03 5.15 -2.39 -0.01 4.02 16 50 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 51 H 0.09 2.22 6.02 -2.39 -0.01 2.21 16 Total: -1.00 -72.03 401.75 1.34 -70.70 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.92 Total: 25.01 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: 8.04 Total: 27.36 kcal Atomic # 7 Polarization: -135.82 SS G_CDS: -9.61 Total: -145.43 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.05 Total: -22.19 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -72.03 1.34 -70.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941480173.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.154 kcal (2) G-P(sol) polarization free energy of solvation -72.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds