Wall clock time and date at job start Wed Apr 1 2020 04:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39874 * 125.89868 * 2 1 4 4 C 1.35315 * 107.91960 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.12606 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47041 * 85.02965 * 5 4 3 7 7 O 1.21288 * 119.99722 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00184 * 180.02562 * 6 5 4 9 9 C 1.47084 * 120.87962 * 180.02562 * 8 6 5 10 10 C 1.53248 * 108.51886 * 231.20403 * 9 8 6 11 11 N 1.46900 * 109.34020 * 306.17010 * 10 9 8 12 12 C 1.46892 * 111.00094 * 187.25124 * 11 10 9 13 13 C 1.53497 * 114.21018 * 174.99715 * 12 11 10 14 14 N 1.47068 * 87.98247 * 87.51918 * 13 12 11 15 15 C 1.36932 * 136.05737 * 206.85727 * 14 13 12 16 16 H 1.08007 * 120.00403 * 7.02530 * 15 14 13 17 17 C 1.38819 * 120.00271 * 187.01909 * 15 14 13 18 18 N 1.31617 * 119.99824 * 6.59118 * 17 15 14 19 19 Si 1.86800 * 120.00160 * 186.59638 * 17 15 14 20 20 H 1.48508 * 109.46943 * 94.74533 * 19 17 15 21 21 H 1.48498 * 109.46995 * 214.74554 * 19 17 15 22 22 H 1.48493 * 109.47191 * 334.74817 * 19 17 15 23 23 C 1.47069 * 87.88573 * 27.12351 * 14 13 12 24 24 C 1.46903 * 111.27021 * 63.10234 * 11 10 9 25 25 C 1.47078 * 120.88061 * 0.02562 * 8 6 5 26 26 N 1.34947 * 107.74571 * 0.22803 * 4 3 2 27 27 C 1.46505 * 126.03317 * 179.77045 * 26 4 3 28 28 N 1.30839 * 125.89864 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.46904 * 90.00438 * 1 2 3 30 30 H 1.09001 * 109.46606 * 210.00099 * 1 2 3 31 31 H 1.08998 * 109.46766 * 330.00345 * 1 2 3 32 32 H 1.08003 * 126.03969 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47314 * 325.03258 * 5 4 3 34 34 H 1.08995 * 109.47448 * 205.02489 * 5 4 3 35 35 H 1.08994 * 109.62920 * 111.49740 * 9 8 6 36 36 H 1.09005 * 109.62748 * 350.90805 * 9 8 6 37 37 H 1.08993 * 109.49039 * 186.21014 * 10 9 8 38 38 H 1.09003 * 109.48990 * 66.12756 * 10 9 8 39 39 H 1.09001 * 113.28083 * 41.93433 * 12 11 10 40 40 H 1.09003 * 113.46511 * 332.74542 * 13 12 11 41 41 H 1.08993 * 113.52640 * 202.31019 * 13 12 11 42 42 H 0.96991 * 120.00095 * 180.02562 * 18 17 15 43 43 H 1.09000 * 113.46368 * 87.65684 * 23 14 13 44 44 H 1.08993 * 113.46792 * 218.09682 * 23 14 13 45 45 H 1.09007 * 109.49034 * 56.85171 * 24 11 10 46 46 H 1.08993 * 109.49347 * 176.93782 * 24 11 10 47 47 H 1.09006 * 109.62660 * 248.50205 * 25 8 6 48 48 H 1.08994 * 109.62989 * 9.08327 * 25 8 6 49 49 H 1.08999 * 109.46925 * 90.00170 * 27 26 4 50 50 H 1.09006 * 109.46692 * 209.99387 * 27 26 4 51 51 H 1.08994 * 109.47441 * 329.99941 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6143 0.7154 -0.0006 5 6 4.8351 1.5989 -0.0013 6 6 5.1705 1.9934 1.4140 7 8 4.4853 1.5965 2.3327 8 7 6.2312 2.7880 1.6587 9 6 6.5765 3.1844 3.0323 10 6 6.7358 4.7080 3.0738 11 7 7.6994 5.1246 2.0462 12 6 8.0104 6.5552 2.1652 13 6 9.1024 7.0441 1.2036 14 7 8.0473 7.2751 0.2055 15 6 7.9725 7.3043 -1.1615 16 1 8.8267 7.0144 -1.7554 17 6 6.7987 7.7065 -1.7840 18 7 5.8031 8.1825 -1.0668 19 14 6.6322 7.5721 -3.6397 20 1 5.9652 6.2910 -3.9853 21 1 5.8190 8.7062 -4.1472 22 1 7.9800 7.6119 -4.2618 23 6 7.1091 7.4675 1.3216 24 6 7.2137 4.8018 0.6979 25 6 7.0741 3.2817 0.5592 26 7 3.6088 -0.6341 -0.0060 27 6 4.7900 -1.5007 -0.0133 28 7 2.2742 -1.0599 -0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.9923 2.1599 0.0004 33 1 4.6354 2.4941 -0.5903 34 1 5.6751 1.0576 -0.4363 35 1 7.5130 2.7103 3.3258 36 1 5.7802 2.8809 3.7121 37 1 7.0989 5.0091 4.0563 38 1 5.7722 5.1798 2.8813 39 1 8.1435 6.8829 3.1962 40 1 9.8085 6.2649 0.9164 41 1 9.5953 7.9585 1.5337 42 1 4.9829 8.4632 -1.5017 43 1 7.0705 8.4948 1.6839 44 1 6.1205 7.0484 1.1349 45 1 6.2434 5.2722 0.5386 46 1 7.9233 5.1709 -0.0424 47 1 8.0585 2.8169 0.6153 48 1 6.6071 3.0425 -0.3961 49 1 5.0861 -1.7198 1.0126 50 1 4.5547 -2.4311 -0.5301 51 1 5.6078 -0.9960 -0.5276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941485621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:27 Heat of formation + Delta-G solvation = 129.774136 kcal Electronic energy + Delta-G solvation = -31803.071321 eV Core-core repulsion = 27742.144721 eV Total energy + Delta-G solvation = -4060.926600 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.38777 -40.13374 -38.98543 -36.49480 -34.19457 -33.56306 -32.40115 -31.92148 -30.73766 -29.65136 -28.46995 -27.56654 -25.99007 -25.43090 -24.69731 -23.47106 -22.88451 -21.38655 -20.38722 -19.69028 -19.07856 -18.35292 -17.21181 -16.75953 -16.63159 -15.87788 -15.56461 -15.34036 -15.14513 -14.97235 -14.48637 -14.32181 -13.92018 -13.81715 -13.78485 -13.60617 -13.40006 -13.10604 -13.02307 -12.82029 -12.64474 -12.45226 -12.31168 -12.12277 -11.89916 -11.75276 -11.47273 -11.29050 -11.07698 -11.01496 -10.86632 -10.61844 -10.57083 -10.54618 -10.19003 -9.92393 -9.81598 -9.43584 -9.06507 -8.85568 -8.56113 -8.45090 -7.67665 -6.91201 -5.88582 -3.20627 1.79047 2.44133 2.63547 2.74271 3.13051 3.29652 3.36344 3.38839 4.28170 4.34410 4.36641 4.40594 4.56940 4.77487 4.92404 5.01978 5.08310 5.17407 5.21957 5.22938 5.29278 5.33087 5.35243 5.40891 5.44146 5.53757 5.59282 5.65354 5.68709 5.74223 5.83385 5.84949 5.91907 6.04688 6.10669 6.19011 6.24589 6.38782 6.49092 6.58094 6.63416 6.70481 6.87651 6.96802 7.01976 7.10296 7.38051 7.44138 7.59814 7.73008 7.73367 7.86240 8.18649 8.92752 9.59730 10.55148 11.28983 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.003232 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.490260 B = 8661.950357 C =10157.967996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.072 3.928 3 C -0.254 4.254 4 C 0.110 3.890 5 C -0.082 4.082 6 C 0.519 3.481 7 O -0.538 6.538 8 N -0.608 5.608 9 C 0.121 3.879 10 C 0.041 3.959 11 N -0.511 5.511 12 C 0.027 3.973 13 C 0.120 3.880 14 N -0.605 5.605 15 C -0.222 4.222 16 H 0.082 0.918 17 C -0.002 4.002 18 N -0.915 5.915 19 Si 0.906 3.094 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.133 3.867 24 C 0.043 3.957 25 C 0.105 3.895 26 N -0.369 5.369 27 C 0.101 3.899 28 N -0.298 5.298 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.145 0.855 33 H 0.124 0.876 34 H 0.103 0.897 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.037 0.963 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.035 0.965 42 H 0.254 0.746 43 H 0.029 0.971 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.125 0.875 47 H 0.073 0.927 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.088 0.912 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.749 -14.531 4.347 15.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.094 4.094 3 C -0.283 4.283 4 C -0.018 4.018 5 C -0.123 4.123 6 C 0.306 3.694 7 O -0.415 6.415 8 N -0.342 5.342 9 C -0.001 4.001 10 C -0.088 4.088 11 N -0.234 5.234 12 C -0.083 4.083 13 C -0.007 4.007 14 N -0.331 5.331 15 C -0.349 4.349 16 H 0.099 0.901 17 C -0.199 4.199 18 N -0.561 5.561 19 Si 0.736 3.264 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.005 3.995 24 C -0.085 4.085 25 C -0.018 4.018 26 N -0.151 5.151 27 C -0.041 4.041 28 N -0.122 5.122 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.163 0.837 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.065 0.935 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.069 0.931 46 H 0.143 0.857 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.107 0.893 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.662 -16.323 4.571 16.964 hybrid contribution -0.691 1.756 -1.196 2.234 sum -1.353 -14.567 3.376 15.014 Atomic orbital electron populations 1.20153 0.86773 1.03208 1.02753 1.22237 0.96834 0.90727 0.99583 1.21072 0.90859 0.99862 1.16496 1.20236 0.95970 0.84174 1.01380 1.20329 0.95143 1.00303 0.96557 1.20230 0.80088 0.78571 0.90523 1.90718 1.49904 1.54875 1.46043 1.48229 1.28412 1.48879 1.08670 1.21675 1.01045 0.94496 0.82919 1.22415 0.95311 0.94548 0.96560 1.61948 1.41814 1.15988 1.03680 1.23401 1.00116 0.87222 0.97579 1.22524 0.92713 0.96740 0.88687 1.45904 1.04889 1.82276 1.00059 1.18905 0.98519 1.38582 0.78943 0.90068 1.24808 0.97088 1.00346 0.97699 1.69850 1.05435 1.46738 1.34086 0.86199 0.77651 0.77389 0.85136 1.21455 1.21743 1.20526 1.22558 0.95489 0.95555 0.85873 1.22721 1.02641 0.91491 0.91682 1.22182 0.94436 0.96436 0.88722 1.48254 1.05462 1.03944 1.57462 1.21812 0.84032 0.94830 1.03381 1.77244 0.86092 1.22632 1.26198 0.90656 0.91131 0.90418 0.83678 0.85852 0.87847 0.91043 0.89227 0.90099 0.94434 0.90067 0.93482 0.94712 0.93610 0.95329 0.92301 0.93150 0.85672 0.90921 0.89942 0.90820 0.89304 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.45 36.01 0.38 -0.33 16 2 C 0.07 1.01 7.22 -82.40 -0.59 0.41 16 3 C -0.25 -3.68 10.65 -40.01 -0.43 -4.11 16 4 C 0.11 1.53 5.42 -82.26 -0.45 1.09 16 5 C -0.08 -0.98 4.36 -29.03 -0.13 -1.10 16 6 C 0.52 7.55 7.70 -10.99 -0.08 7.47 16 7 O -0.54 -9.69 15.49 5.55 0.09 -9.60 16 8 N -0.61 -8.35 3.01 -172.43 -0.52 -8.87 16 9 C 0.12 1.61 6.60 -3.60 -0.02 1.58 16 10 C 0.04 0.57 5.61 -3.70 -0.02 0.55 16 11 N -0.51 -8.13 4.77 -226.09 -1.08 -9.21 16 12 C 0.03 0.46 4.37 -67.60 -0.30 0.17 16 13 C 0.12 2.27 7.94 -8.50 -0.07 2.20 16 14 N -0.60 -13.99 2.15 -184.78 -0.40 -14.39 16 15 C -0.22 -5.65 9.52 -15.06 -0.14 -5.79 16 16 H 0.08 2.01 7.84 -52.48 -0.41 1.60 16 17 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 18 N -0.92 -25.63 11.84 55.49 0.66 -24.97 16 19 Si 0.91 20.71 29.56 -169.99 -5.02 15.68 16 20 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 C 0.13 2.90 6.29 -8.50 -0.05 2.85 16 24 C 0.04 0.73 4.35 -3.68 -0.02 0.72 16 25 C 0.10 1.39 6.51 -3.59 -0.02 1.37 16 26 N -0.37 -5.03 4.01 -63.88 -0.26 -5.29 16 27 C 0.10 0.93 11.27 59.85 0.67 1.60 16 28 N -0.30 -4.51 12.58 33.67 0.42 -4.09 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 33 H 0.12 1.40 7.66 -51.93 -0.40 1.00 16 34 H 0.10 0.93 6.80 -51.93 -0.35 0.58 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 1.24 7.06 -51.93 -0.37 0.87 16 37 H 0.08 0.99 8.02 -51.93 -0.42 0.57 16 38 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 1.23 8.01 -51.93 -0.42 0.82 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.44 6.17 -51.93 -0.32 1.12 16 45 H 0.05 1.05 6.57 -51.93 -0.34 0.71 16 46 H 0.13 2.48 5.15 -51.93 -0.27 2.21 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.08 0.96 6.02 -51.93 -0.31 0.65 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.08 0.57 6.97 -51.93 -0.36 0.21 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -33.19 400.66 -9.61 -42.80 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.17 Total: 3.36 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -1.37 Total: 8.53 kcal Atomic # 7 Polarization: -65.65 SS G_CDS: -1.17 Total: -66.82 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.19 -9.61 -42.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941485621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.578 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds