Wall clock time and date at job start Wed Apr 1 2020 04:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39874 * 125.89868 * 2 1 4 4 C 1.35315 * 107.91960 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.12606 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47041 * 85.02965 * 5 4 3 7 7 O 1.21288 * 119.99722 * 359.97438 * 6 5 4 8 8 N 1.34769 * 120.00184 * 180.02562 * 6 5 4 9 9 C 1.47084 * 120.87962 * 180.02562 * 8 6 5 10 10 C 1.53248 * 108.51886 * 231.20403 * 9 8 6 11 11 N 1.46900 * 109.34020 * 306.17010 * 10 9 8 12 12 C 1.46892 * 111.00094 * 187.25124 * 11 10 9 13 13 C 1.53497 * 114.21018 * 174.99715 * 12 11 10 14 14 N 1.47068 * 87.98247 * 87.51918 * 13 12 11 15 15 C 1.36932 * 136.05737 * 206.85727 * 14 13 12 16 16 H 1.08007 * 120.00403 * 7.02530 * 15 14 13 17 17 C 1.38819 * 120.00271 * 187.01909 * 15 14 13 18 18 N 1.31617 * 119.99824 * 6.59118 * 17 15 14 19 19 Si 1.86800 * 120.00160 * 186.59638 * 17 15 14 20 20 H 1.48508 * 109.46943 * 94.74533 * 19 17 15 21 21 H 1.48498 * 109.46995 * 214.74554 * 19 17 15 22 22 H 1.48493 * 109.47191 * 334.74817 * 19 17 15 23 23 C 1.47069 * 87.88573 * 27.12351 * 14 13 12 24 24 C 1.46903 * 111.27021 * 63.10234 * 11 10 9 25 25 C 1.47078 * 120.88061 * 0.02562 * 8 6 5 26 26 N 1.34947 * 107.74571 * 0.22803 * 4 3 2 27 27 C 1.46505 * 126.03317 * 179.77045 * 26 4 3 28 28 N 1.30839 * 125.89864 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.46904 * 90.00438 * 1 2 3 30 30 H 1.09001 * 109.46606 * 210.00099 * 1 2 3 31 31 H 1.08998 * 109.46766 * 330.00345 * 1 2 3 32 32 H 1.08003 * 126.03969 * 0.02562 * 3 2 1 33 33 H 1.09001 * 109.47314 * 325.03258 * 5 4 3 34 34 H 1.08995 * 109.47448 * 205.02489 * 5 4 3 35 35 H 1.08994 * 109.62920 * 111.49740 * 9 8 6 36 36 H 1.09005 * 109.62748 * 350.90805 * 9 8 6 37 37 H 1.08993 * 109.49039 * 186.21014 * 10 9 8 38 38 H 1.09003 * 109.48990 * 66.12756 * 10 9 8 39 39 H 1.09001 * 113.28083 * 41.93433 * 12 11 10 40 40 H 1.09003 * 113.46511 * 332.74542 * 13 12 11 41 41 H 1.08993 * 113.52640 * 202.31019 * 13 12 11 42 42 H 0.96991 * 120.00095 * 180.02562 * 18 17 15 43 43 H 1.09000 * 113.46368 * 87.65684 * 23 14 13 44 44 H 1.08993 * 113.46792 * 218.09682 * 23 14 13 45 45 H 1.09007 * 109.49034 * 56.85171 * 24 11 10 46 46 H 1.08993 * 109.49347 * 176.93782 * 24 11 10 47 47 H 1.09006 * 109.62660 * 248.50205 * 25 8 6 48 48 H 1.08994 * 109.62989 * 9.08327 * 25 8 6 49 49 H 1.08999 * 109.46925 * 90.00170 * 27 26 4 50 50 H 1.09006 * 109.46692 * 209.99387 * 27 26 4 51 51 H 1.08994 * 109.47441 * 329.99941 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3272 1.1331 0.0000 4 6 3.6143 0.7154 -0.0006 5 6 4.8351 1.5989 -0.0013 6 6 5.1705 1.9934 1.4140 7 8 4.4853 1.5965 2.3327 8 7 6.2312 2.7880 1.6587 9 6 6.5765 3.1844 3.0323 10 6 6.7358 4.7080 3.0738 11 7 7.6994 5.1246 2.0462 12 6 8.0104 6.5552 2.1652 13 6 9.1024 7.0441 1.2036 14 7 8.0473 7.2751 0.2055 15 6 7.9725 7.3043 -1.1615 16 1 8.8267 7.0144 -1.7554 17 6 6.7987 7.7065 -1.7840 18 7 5.8031 8.1825 -1.0668 19 14 6.6322 7.5721 -3.6397 20 1 5.9652 6.2910 -3.9853 21 1 5.8190 8.7062 -4.1472 22 1 7.9800 7.6119 -4.2618 23 6 7.1091 7.4675 1.3216 24 6 7.2137 4.8018 0.6979 25 6 7.0741 3.2817 0.5592 26 7 3.6088 -0.6341 -0.0060 27 6 4.7900 -1.5007 -0.0133 28 7 2.2742 -1.0599 -0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3632 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.9923 2.1599 0.0004 33 1 4.6354 2.4941 -0.5903 34 1 5.6751 1.0576 -0.4363 35 1 7.5130 2.7103 3.3258 36 1 5.7802 2.8809 3.7121 37 1 7.0989 5.0091 4.0563 38 1 5.7722 5.1798 2.8813 39 1 8.1435 6.8829 3.1962 40 1 9.8085 6.2649 0.9164 41 1 9.5953 7.9585 1.5337 42 1 4.9829 8.4632 -1.5017 43 1 7.0705 8.4948 1.6839 44 1 6.1205 7.0484 1.1349 45 1 6.2434 5.2722 0.5386 46 1 7.9233 5.1709 -0.0424 47 1 8.0585 2.8169 0.6153 48 1 6.6071 3.0425 -0.3961 49 1 5.0861 -1.7198 1.0126 50 1 4.5547 -2.4311 -0.5301 51 1 5.6078 -0.9960 -0.5276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941485621.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:25 Heat of formation + Delta-G solvation = 107.807038 kcal Electronic energy + Delta-G solvation = -31804.023886 eV Core-core repulsion = 27742.144721 eV Total energy + Delta-G solvation = -4061.879165 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.40170 -41.41731 -40.37432 -37.83061 -35.16599 -34.95475 -33.91513 -33.23232 -31.91428 -30.48444 -29.98901 -28.86386 -27.32651 -26.36322 -26.27897 -24.86114 -24.38580 -22.65706 -21.45063 -20.88839 -20.34798 -19.56448 -18.68393 -18.21303 -17.66731 -17.09410 -16.87348 -16.69984 -16.43093 -16.28375 -15.99799 -15.44657 -15.34752 -15.01922 -14.83779 -14.63192 -14.49479 -14.37463 -14.26411 -14.11079 -13.86680 -13.35374 -13.28883 -13.19145 -13.05699 -12.93984 -12.81751 -12.74179 -12.72911 -12.45576 -12.23375 -12.16172 -12.01995 -11.93522 -11.59004 -11.56636 -11.16989 -11.01937 -10.74558 -10.07325 -9.76853 -9.47791 -9.11579 -8.78664 -7.88095 -5.19763 0.75894 1.47775 1.48502 1.49606 1.57741 1.57798 1.70430 2.05292 2.49886 2.95311 3.35731 3.36905 3.51135 3.53086 3.58192 3.86849 3.91621 3.99434 4.10839 4.17194 4.27865 4.31223 4.34278 4.39419 4.45445 4.55314 4.59338 4.63113 4.63886 4.67215 4.71467 4.79325 4.81636 4.89258 4.90462 4.93777 5.02309 5.06478 5.10336 5.21260 5.21499 5.35925 5.39766 5.51973 5.56701 5.72692 5.92293 6.03616 6.15525 6.28443 6.40086 6.70734 6.93162 7.05988 7.64909 8.65960 9.29887 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010715 B = 0.003232 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.490260 B = 8661.950357 C =10157.967996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.061 3.939 3 C -0.284 4.284 4 C 0.105 3.895 5 C -0.076 4.076 6 C 0.519 3.481 7 O -0.577 6.577 8 N -0.607 5.607 9 C 0.124 3.876 10 C 0.044 3.956 11 N -0.499 5.499 12 C 0.052 3.948 13 C 0.123 3.877 14 N -0.626 5.626 15 C -0.216 4.216 16 H 0.088 0.912 17 C -0.058 4.058 18 N -0.952 5.952 19 Si 0.966 3.034 20 H -0.282 1.282 21 H -0.306 1.306 22 H -0.266 1.266 23 C 0.131 3.869 24 C 0.055 3.945 25 C 0.114 3.886 26 N -0.373 5.373 27 C 0.090 3.910 28 N -0.328 5.328 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.140 0.860 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.009 0.991 39 H 0.114 0.886 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.244 0.756 43 H 0.009 0.991 44 H 0.023 0.977 45 H 0.003 0.997 46 H 0.101 0.899 47 H 0.098 0.902 48 H 0.100 0.900 49 H 0.074 0.926 50 H 0.101 0.899 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -16.211 4.366 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.104 4.104 3 C -0.313 4.313 4 C -0.024 4.024 5 C -0.117 4.117 6 C 0.308 3.692 7 O -0.457 6.457 8 N -0.340 5.340 9 C 0.001 3.999 10 C -0.085 4.085 11 N -0.222 5.222 12 C -0.058 4.058 13 C -0.002 4.002 14 N -0.353 5.353 15 C -0.344 4.344 16 H 0.106 0.894 17 C -0.251 4.251 18 N -0.601 5.601 19 Si 0.795 3.205 20 H -0.209 1.209 21 H -0.233 1.233 22 H -0.191 1.191 23 C 0.004 3.996 24 C -0.074 4.074 25 C -0.009 4.009 26 N -0.155 5.155 27 C -0.050 4.050 28 N -0.152 5.152 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.162 0.838 33 H 0.146 0.854 34 H 0.158 0.842 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.028 0.972 39 H 0.132 0.868 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.027 0.973 44 H 0.042 0.958 45 H 0.022 0.978 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.093 0.907 50 H 0.119 0.881 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.603 -18.030 4.598 18.676 hybrid contribution -1.309 2.304 -1.131 2.881 sum 0.294 -15.726 3.467 16.106 Atomic orbital electron populations 1.20269 0.84599 1.03929 1.03950 1.22799 0.98464 0.90312 0.98831 1.21335 0.91822 1.00213 1.17943 1.20516 0.96429 0.84751 1.00707 1.20376 0.95697 1.00615 0.95030 1.20599 0.79456 0.78062 0.91114 1.90705 1.51019 1.56489 1.47445 1.48288 1.28240 1.48408 1.09048 1.21701 1.01862 0.93596 0.82693 1.22488 0.93611 0.95209 0.97145 1.62035 1.41956 1.14697 1.03561 1.23282 0.96965 0.87119 0.98408 1.22641 0.92504 0.97502 0.87573 1.46157 1.07011 1.82059 1.00031 1.19236 0.98268 1.36451 0.80427 0.89428 1.25498 0.97081 1.01159 1.01409 1.70039 1.05752 1.48956 1.35380 0.85245 0.77779 0.76750 0.80746 1.20895 1.23301 1.19064 1.22518 0.94668 0.95391 0.87069 1.22445 0.99245 0.93994 0.91733 1.22165 0.95871 0.93461 0.89376 1.48611 1.05915 1.04290 1.56675 1.22173 0.83440 0.95307 1.04094 1.77176 0.87136 1.23455 1.27402 0.89139 0.90571 0.89484 0.83773 0.85356 0.84232 0.88745 0.89898 0.87298 0.97211 0.86785 0.92164 0.93605 0.94719 0.97332 0.95839 0.97830 0.88055 0.88340 0.88211 0.90723 0.88077 0.86869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.36 10.45 71.24 0.74 -0.62 16 2 C 0.06 1.72 7.22 43.10 0.31 2.03 16 3 C -0.28 -8.33 10.65 21.99 0.23 -8.10 16 4 C 0.10 2.84 5.42 41.40 0.22 3.06 16 5 C -0.08 -1.68 4.36 29.10 0.13 -1.55 16 6 C 0.52 14.42 7.70 87.66 0.68 15.09 16 7 O -0.58 -20.51 15.49 -3.06 -0.05 -20.56 16 8 N -0.61 -15.47 3.01 -817.84 -2.46 -17.93 16 9 C 0.12 3.00 6.60 86.35 0.57 3.57 16 10 C 0.04 1.17 5.61 86.39 0.48 1.65 16 11 N -0.50 -14.92 4.77 -869.22 -4.15 -19.06 16 12 C 0.05 1.72 4.37 45.39 0.20 1.92 16 13 C 0.12 4.42 7.94 83.18 0.66 5.08 16 14 N -0.63 -28.97 2.15 -738.50 -1.59 -30.56 16 15 C -0.22 -10.97 9.52 84.04 0.80 -10.17 16 16 H 0.09 4.24 7.84 -2.91 -0.02 4.22 16 17 C -0.06 -3.09 5.50 84.86 0.47 -2.63 16 18 N -0.95 -55.45 11.84 21.65 0.26 -55.19 16 19 Si 0.97 43.01 29.56 68.60 2.03 45.04 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 21 H -0.31 -14.24 7.11 99.48 0.71 -13.53 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 23 C 0.13 5.86 6.29 83.18 0.52 6.39 16 24 C 0.05 1.83 4.35 86.39 0.38 2.20 16 25 C 0.11 2.72 6.51 86.36 0.56 3.28 16 26 N -0.37 -9.78 4.01 -356.02 -1.43 -11.20 16 27 C 0.09 1.47 11.27 127.77 1.44 2.91 16 28 N -0.33 -9.83 12.58 -47.38 -0.60 -10.43 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 33 H 0.13 2.73 7.66 -2.39 -0.02 2.71 16 34 H 0.14 1.99 6.80 -2.39 -0.02 1.98 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.08 2.18 7.06 -2.38 -0.02 2.17 16 37 H 0.11 2.31 8.02 -2.39 -0.02 2.29 16 38 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 39 H 0.11 3.08 8.01 -2.39 -0.02 3.06 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 43 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 44 H 0.02 1.20 6.17 -2.39 -0.01 1.19 16 45 H 0.00 0.14 6.57 -2.38 -0.02 0.13 16 46 H 0.10 3.93 5.15 -2.39 -0.01 3.91 16 47 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 48 H 0.10 2.06 6.02 -2.39 -0.01 2.04 16 49 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 51 H 0.11 1.15 6.97 -2.39 -0.02 1.13 16 Total: -1.00 -75.38 400.66 1.34 -74.04 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.93 Total: 21.74 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 8.40 Total: 24.13 kcal Atomic # 7 Polarization: -134.41 SS G_CDS: -9.96 Total: -144.38 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -75.38 1.34 -74.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941485621.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.843 kcal (2) G-P(sol) polarization free energy of solvation -75.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds