Wall clock time and date at job start Wed Apr 1 2020 04:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30445 * 125.98549 * 2 1 4 4 N 1.39936 * 108.89370 * 179.97438 * 3 2 1 5 5 C 1.46504 * 125.74925 * 179.73773 * 4 3 2 6 6 C 1.34261 * 108.49458 * 0.02562 * 4 3 2 7 7 C 1.50694 * 126.29230 * 179.97438 * 6 4 3 8 8 C 1.38043 * 107.41343 * 0.02562 * 6 4 3 9 9 C 1.47426 * 126.41218 * 179.97438 * 8 6 4 10 10 O 1.21603 * 119.99950 * 270.02475 * 9 8 6 11 11 N 1.34774 * 120.00104 * 90.02839 * 9 8 6 12 12 C 1.47083 * 120.88254 * 359.71865 * 11 9 8 13 13 C 1.53700 * 108.27584 * 128.75537 * 12 11 9 14 14 N 1.46903 * 109.25413 * 54.08480 * 13 12 11 15 15 C 1.46901 * 110.99724 * 172.60312 * 14 13 12 16 16 C 1.53944 * 113.73809 * 43.04759 * 15 14 13 17 17 N 1.47816 * 86.03661 * 222.08145 * 16 15 14 18 18 C 1.36934 * 134.45966 * 204.64971 * 17 16 15 19 19 H 1.08000 * 120.00325 * 173.34475 * 18 17 16 20 20 C 1.38815 * 120.00023 * 353.34089 * 18 17 16 21 21 N 1.31623 * 119.99695 * 5.06721 * 20 18 17 22 22 Si 1.86791 * 120.00261 * 185.06682 * 20 18 17 23 23 H 1.48499 * 109.47375 * 94.98470 * 22 20 18 24 24 H 1.48506 * 109.47310 * 214.98834 * 22 20 18 25 25 H 1.48497 * 109.47206 * 334.98895 * 22 20 18 26 26 C 1.47577 * 91.04947 * 24.54917 * 17 16 15 27 27 C 1.46897 * 111.26835 * 296.75530 * 14 13 12 28 28 C 1.47081 * 120.88263 * 180.02562 * 11 9 8 29 29 H 1.08999 * 109.47291 * 90.02376 * 1 2 3 30 30 H 1.09000 * 109.47098 * 210.01943 * 1 2 3 31 31 H 1.08992 * 109.47455 * 330.02112 * 1 2 3 32 32 H 1.08997 * 109.47257 * 90.02962 * 5 4 3 33 33 H 1.09003 * 109.46555 * 210.02344 * 5 4 3 34 34 H 1.08994 * 109.47172 * 330.02446 * 5 4 3 35 35 H 1.08998 * 109.46910 * 90.02785 * 7 6 4 36 36 H 1.09000 * 109.47085 * 210.02979 * 7 6 4 37 37 H 1.09001 * 109.47403 * 330.03074 * 7 6 4 38 38 H 1.08993 * 109.62756 * 248.52510 * 12 11 9 39 39 H 1.09000 * 109.62373 * 9.10567 * 12 11 9 40 40 H 1.08995 * 109.64752 * 294.08589 * 13 12 11 41 41 H 1.09000 * 109.41869 * 173.95095 * 13 12 11 42 42 H 1.09001 * 112.94427 * 174.63045 * 15 14 13 43 43 H 1.08998 * 113.77279 * 336.34360 * 16 15 14 44 44 H 1.09000 * 113.77376 * 107.74117 * 16 15 14 45 45 H 0.97002 * 120.00054 * 179.97438 * 21 20 18 46 46 H 1.09002 * 113.77350 * 221.15754 * 26 17 16 47 47 H 1.08995 * 113.77190 * 89.75541 * 26 17 16 48 48 H 1.08994 * 109.49514 * 303.14569 * 27 14 13 49 49 H 1.09007 * 109.48668 * 183.06658 * 27 14 13 50 50 H 1.09001 * 109.62987 * 350.89274 * 28 11 9 51 51 H 1.09004 * 109.63112 * 111.47263 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6442 0.0006 5 6 4.7786 1.5291 -0.0047 6 6 3.6439 -0.6980 0.0004 7 6 4.8800 -1.5599 0.0003 8 6 2.3373 -1.1432 -0.0009 9 6 1.8916 -2.5485 -0.0021 10 8 1.7091 -3.1276 -1.0557 11 7 1.6864 -3.1914 1.1645 12 6 1.9070 -2.5116 2.4500 13 6 0.6519 -2.7005 3.3168 14 7 0.3437 -4.1334 3.4173 15 6 -0.7422 -4.3722 4.3774 16 6 -1.9065 -3.3721 4.2575 17 7 -1.9043 -3.3497 5.7355 18 6 -2.8421 -3.0648 6.6917 19 1 -2.6158 -3.2266 7.7353 20 6 -4.0838 -2.5679 6.3198 21 7 -4.3964 -2.4645 5.0454 22 14 -5.3110 -2.0461 7.6278 23 1 -5.1915 -0.5849 7.8640 24 1 -6.6876 -2.3625 7.1695 25 1 -5.0295 -2.7760 8.8900 26 6 -0.4871 -3.7601 5.7667 27 6 0.0185 -4.7020 2.1024 28 6 1.2423 -4.5934 1.1859 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5141 31 1 -0.3634 0.8901 0.5135 32 1 5.0695 1.7530 1.0217 33 1 5.6051 1.0370 -0.5174 34 1 4.5300 2.4556 -0.5221 35 1 5.1777 -1.7683 1.0279 36 1 4.6691 -2.4975 -0.5141 37 1 5.6873 -1.0375 -0.5129 38 1 2.7709 -2.9479 2.9513 39 1 2.0780 -1.4490 2.2777 40 1 -0.1898 -2.1786 2.8616 41 1 0.8351 -2.2971 4.3127 42 1 -1.0604 -5.4142 4.4085 43 1 -1.6247 -2.4221 3.8034 44 1 -2.8106 -3.8002 3.8247 45 1 -5.2642 -2.1176 4.7855 46 1 -0.2600 -4.4976 6.5366 47 1 0.2126 -2.9244 5.7568 48 1 -0.8143 -4.1521 1.6642 49 1 -0.2576 -5.7502 2.2177 50 1 0.9736 -4.9079 0.1775 51 1 2.0438 -5.2256 1.5683 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941504750.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:31 Heat of formation + Delta-G solvation = 120.643183 kcal Electronic energy + Delta-G solvation = -31928.865427 eV Core-core repulsion = 27867.542879 eV Total energy + Delta-G solvation = -4061.322548 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.70534 -39.91732 -38.65167 -36.46395 -34.50718 -33.69231 -32.42304 -31.79080 -30.96893 -29.73908 -28.36793 -27.53223 -26.28502 -25.66531 -24.86933 -23.66131 -22.91600 -22.01975 -20.58671 -19.70910 -19.22121 -18.33333 -17.25647 -16.84600 -16.54334 -15.94345 -15.82275 -15.29155 -15.05531 -14.94005 -14.72251 -14.27244 -14.07675 -13.87843 -13.76545 -13.65161 -13.54079 -13.36926 -12.94318 -12.81349 -12.59944 -12.35123 -12.20442 -12.16242 -12.07969 -11.98692 -11.80523 -11.56378 -11.18332 -10.97272 -10.90324 -10.79683 -10.69671 -10.52888 -10.15626 -9.89938 -9.85761 -9.48233 -9.35082 -8.79214 -8.64673 -8.61488 -7.79684 -6.84547 -5.78523 -3.10198 1.49495 2.13084 2.32457 2.59353 3.13035 3.38428 3.43527 3.45741 4.13028 4.17770 4.23867 4.49604 4.59026 4.68187 4.77078 4.84031 5.02583 5.04082 5.09632 5.10341 5.15387 5.22150 5.34546 5.37721 5.44406 5.45616 5.49731 5.57817 5.59850 5.62537 5.70983 5.79463 5.81336 5.86901 5.89879 6.02927 6.13570 6.20671 6.34699 6.38559 6.50658 6.59879 6.64051 6.66310 7.03031 7.19856 7.39456 7.42983 7.47903 7.54131 7.63653 7.96920 8.21989 9.03296 9.69928 10.59529 11.38643 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014062 B = 0.002800 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.757097 B = 9998.379241 C =10832.223224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.118 3.882 3 N -0.296 5.296 4 N -0.364 5.364 5 C 0.099 3.901 6 C 0.122 3.878 7 C -0.096 4.096 8 C -0.278 4.278 9 C 0.601 3.399 10 O -0.542 6.542 11 N -0.602 5.602 12 C 0.118 3.882 13 C 0.036 3.964 14 N -0.529 5.529 15 C 0.034 3.966 16 C 0.137 3.863 17 N -0.609 5.609 18 C -0.223 4.223 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.909 3.091 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.124 3.876 27 C 0.042 3.958 28 C 0.118 3.882 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.031 0.969 44 H 0.064 0.936 45 H 0.253 0.747 46 H 0.045 0.955 47 H 0.037 0.963 48 H 0.041 0.959 49 H 0.085 0.915 50 H 0.092 0.908 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.914 2.535 -11.023 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.049 4.049 3 N -0.118 5.118 4 N -0.144 5.144 5 C -0.042 4.042 6 C -0.008 4.008 7 C -0.154 4.154 8 C -0.293 4.293 9 C 0.388 3.612 10 O -0.420 6.420 11 N -0.335 5.335 12 C -0.005 4.005 13 C -0.093 4.093 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.010 3.990 17 N -0.336 5.336 18 C -0.351 4.351 19 H 0.098 0.902 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.739 3.261 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.205 1.205 26 C -0.002 4.002 27 C -0.087 4.087 28 C -0.004 4.004 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.118 0.882 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.059 0.941 49 H 0.103 0.897 50 H 0.111 0.889 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 21.081 3.459 -11.285 24.160 hybrid contribution -1.412 0.192 0.521 1.518 sum 19.669 3.650 -10.764 22.716 Atomic orbital electron populations 1.20282 0.85881 1.04043 1.03529 1.22333 0.96902 0.88789 0.96862 1.77158 0.85762 1.22275 1.26603 1.48132 1.05946 1.03970 1.56325 1.21912 0.84075 0.94519 1.03737 1.21276 0.96002 0.84662 0.98890 1.20543 0.92239 0.98793 1.03859 1.19775 0.92123 0.94202 1.23221 1.17332 0.76310 0.84460 0.83079 1.90754 1.52110 1.67995 1.31096 1.48160 1.66368 1.13091 1.05885 1.21934 0.98286 0.97446 0.82837 1.22673 0.96295 0.89797 1.00497 1.62026 1.41626 1.13733 1.07934 1.24296 0.90422 1.00298 0.92400 1.22852 0.95474 0.94605 0.86107 1.45800 1.05077 1.80565 1.02119 1.19005 0.92177 1.36380 0.87516 0.90192 1.24818 0.97923 1.01319 0.96276 1.69842 1.21824 1.50908 1.13964 0.86142 0.80693 0.78557 0.80660 1.21640 1.21712 1.20535 1.22694 0.87979 0.95719 0.93828 1.22400 0.96029 1.00756 0.89466 1.21763 0.96701 0.81260 1.00724 0.89972 0.90227 0.90115 0.90292 0.89400 0.88994 0.89466 0.89337 0.90588 0.90915 0.89923 0.93369 0.89052 0.88217 0.95155 0.91733 0.93677 0.93715 0.94571 0.94057 0.89668 0.88937 0.90859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.28 36.01 0.37 -0.61 16 2 C 0.12 1.61 7.16 -82.02 -0.59 1.03 16 3 N -0.30 -3.98 12.50 33.89 0.42 -3.56 16 4 N -0.36 -3.83 3.98 -63.34 -0.25 -4.08 16 5 C 0.10 0.55 11.25 59.85 0.67 1.23 16 6 C 0.12 1.31 7.01 -81.60 -0.57 0.74 16 7 C -0.10 -0.67 9.93 36.00 0.36 -0.31 16 8 C -0.28 -3.70 3.90 -105.07 -0.41 -4.11 16 9 C 0.60 8.69 6.87 -12.52 -0.09 8.60 16 10 O -0.54 -9.49 16.56 5.28 0.09 -9.40 16 11 N -0.60 -7.81 3.00 -173.42 -0.52 -8.33 16 12 C 0.12 1.43 6.53 -3.36 -0.02 1.41 16 13 C 0.04 0.53 4.65 -3.46 -0.02 0.51 16 14 N -0.53 -7.94 4.77 -227.91 -1.09 -9.02 16 15 C 0.03 0.63 4.05 -69.92 -0.28 0.35 16 16 C 0.14 3.15 6.72 -2.84 -0.02 3.13 16 17 N -0.61 -15.46 3.70 -177.87 -0.66 -16.12 16 18 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 21 N -0.92 -27.28 11.51 55.49 0.64 -26.64 16 22 Si 0.91 22.16 29.56 -169.99 -5.02 17.14 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.12 2.49 8.40 -2.97 -0.02 2.47 16 27 C 0.04 0.58 5.55 -3.68 -0.02 0.56 16 28 C 0.12 1.46 6.60 -3.58 -0.02 1.43 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.05 8.01 -51.93 -0.42 0.63 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.27 7.01 -51.93 -0.36 -0.10 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.71 7.96 -51.93 -0.41 0.30 16 37 H 0.08 0.34 7.04 -51.93 -0.37 -0.02 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.00 6.32 -51.93 -0.33 0.67 16 40 H 0.05 0.81 6.38 -51.93 -0.33 0.48 16 41 H 0.09 1.39 5.81 -51.93 -0.30 1.09 16 42 H 0.10 1.82 8.11 -51.93 -0.42 1.40 16 43 H 0.03 0.73 5.76 -51.93 -0.30 0.43 16 44 H 0.06 1.68 7.37 -51.93 -0.38 1.30 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 47 H 0.04 0.70 5.93 -51.93 -0.31 0.39 16 48 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 50 H 0.09 1.19 7.06 -51.93 -0.37 0.82 16 51 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 402.24 15.07 6.06 6.06 Total: -1.00 -35.27 402.24 -9.32 -44.59 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -8.07 Total: -0.35 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -0.92 Total: 9.72 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -1.46 Total: -67.76 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.27 -9.32 -44.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941504750.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.232 kcal (2) G-P(sol) polarization free energy of solvation -35.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds