Wall clock time and date at job start Wed Apr 1 2020 04:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30839 * 125.89995 * 2 1 4 4 N 1.40088 * 108.20640 * 180.25714 * 3 2 1 5 5 H 0.96996 * 126.03571 * 179.70197 * 4 3 2 6 6 C 1.34949 * 107.92123 * 359.71937 * 4 3 2 7 7 C 1.50704 * 126.12247 * 180.02562 * 6 4 3 8 8 C 1.35312 * 107.74830 * 0.02562 * 6 4 3 9 9 C 1.50701 * 126.04017 * 179.97438 * 8 6 4 10 10 C 1.50700 * 109.47301 * 89.99541 * 9 8 6 11 11 O 1.21282 * 119.99768 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99982 * 179.97438 * 10 9 8 13 13 C 1.47075 * 120.88032 * 180.02562 * 12 10 9 14 14 C 1.53241 * 108.52308 * 231.21201 * 13 12 10 15 15 N 1.46898 * 109.33951 * 306.17219 * 14 13 12 16 16 C 1.46898 * 111.00064 * 187.25568 * 15 14 13 17 17 C 1.53495 * 114.20715 * 180.02562 * 16 15 14 18 18 N 1.47066 * 87.98658 * 220.14321 * 17 16 15 19 19 C 1.36937 * 136.06113 * 206.85859 * 18 17 16 20 20 H 1.07995 * 120.00001 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00320 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99557 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99975 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47363 * 60.00463 * 23 21 19 25 25 H 1.48506 * 109.46719 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47174 * 300.00290 * 23 21 19 27 27 C 1.47067 * 87.88528 * 27.11900 * 18 17 16 28 28 C 1.46895 * 111.27184 * 63.10496 * 15 14 13 29 29 C 1.47083 * 120.88438 * 0.03512 * 12 10 9 30 30 H 1.08996 * 109.47408 * 270.20741 * 1 2 3 31 31 H 1.09004 * 109.47006 * 30.21520 * 1 2 3 32 32 H 1.09002 * 109.46720 * 150.20681 * 1 2 3 33 33 H 1.09004 * 109.47222 * 269.97916 * 7 6 4 34 34 H 1.08998 * 109.47012 * 29.97988 * 7 6 4 35 35 H 1.08996 * 109.47097 * 149.97835 * 7 6 4 36 36 H 1.09005 * 109.47099 * 329.99963 * 9 8 6 37 37 H 1.08997 * 109.47187 * 210.00352 * 9 8 6 38 38 H 1.08999 * 109.62826 * 111.50161 * 13 12 10 39 39 H 1.09002 * 109.63321 * 350.92462 * 13 12 10 40 40 H 1.09002 * 109.49164 * 186.20946 * 14 13 12 41 41 H 1.09002 * 109.49308 * 66.13262 * 14 13 12 42 42 H 1.09006 * 113.28003 * 313.06392 * 16 15 14 43 43 H 1.09005 * 113.46950 * 105.36887 * 17 16 15 44 44 H 1.08994 * 113.52293 * 334.93371 * 17 16 15 45 45 H 0.96999 * 119.99537 * 179.97438 * 22 21 19 46 46 H 1.09007 * 113.46858 * 87.65629 * 27 18 17 47 47 H 1.08993 * 113.47208 * 218.09965 * 27 18 17 48 48 H 1.08998 * 109.49572 * 56.85259 * 28 15 14 49 49 H 1.08992 * 109.49361 * 176.93859 * 28 15 14 50 50 H 1.09005 * 109.62160 * 248.49928 * 29 12 10 51 51 H 1.09000 * 109.62522 * 9.07498 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0114 6 6 3.6142 -0.7154 -0.0033 7 6 4.8350 -1.5989 -0.0072 8 6 2.3271 -1.1330 0.0036 9 6 1.8599 -2.5657 0.0082 10 6 1.7110 -3.0411 1.4305 11 8 1.9595 -2.2902 2.3499 12 7 1.3009 -4.3003 1.6807 13 6 1.1485 -4.7842 3.0611 14 6 1.9083 -6.1078 3.1997 15 7 1.4533 -7.0410 2.1605 16 6 2.0304 -8.3766 2.3631 17 6 1.6025 -9.4128 1.3146 18 7 1.4996 -10.3958 2.4036 19 6 1.6029 -11.7565 2.5167 20 1 1.8117 -12.3566 1.6434 21 6 1.4405 -12.3646 3.7540 22 7 1.1866 -11.6331 4.8184 23 14 1.5822 -14.2208 3.9082 24 1 2.9343 -14.6520 3.4715 25 1 1.3685 -14.6175 5.3233 26 1 0.5556 -14.8684 3.0526 27 6 1.2303 -9.2748 3.3167 28 6 1.7604 -6.5332 0.8167 29 6 0.9940 -5.2270 0.5805 30 1 -0.3634 0.0037 1.0276 31 1 -0.3633 0.8881 -0.5172 32 1 -0.3633 -0.8919 -0.5106 33 1 5.1244 -1.8144 -1.0358 34 1 5.6536 -1.0898 0.5015 35 1 4.6101 -2.5317 0.5099 36 1 2.5909 -3.1880 -0.5082 37 1 0.8987 -2.6360 -0.5010 38 1 0.0924 -4.9438 3.2787 39 1 1.5611 -4.0509 3.7540 40 1 1.7158 -6.5364 4.1832 41 1 2.9771 -5.9274 3.0840 42 1 3.1022 -8.3574 2.5606 43 1 2.3838 -9.6466 0.5913 44 1 0.6464 -9.1854 0.8432 45 1 1.0727 -12.0581 5.6828 46 1 0.1748 -9.0098 3.3793 47 1 1.6950 -9.3911 4.2957 48 1 2.8312 -6.3469 0.7341 49 1 1.4606 -7.2704 0.0720 50 1 -0.0769 -5.4290 0.5601 51 1 1.3046 -4.7863 -0.3668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941661635.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:42 Heat of formation + Delta-G solvation = 108.996310 kcal Electronic energy + Delta-G solvation = -30819.496554 eV Core-core repulsion = 26757.668960 eV Total energy + Delta-G solvation = -4061.827594 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.66156 -40.10537 -38.67401 -36.80655 -33.92929 -33.69154 -33.24214 -31.94667 -31.22387 -29.55353 -28.20409 -27.78251 -26.69345 -25.79581 -24.88287 -23.16487 -22.74725 -21.43496 -20.41707 -19.79704 -19.13241 -18.72561 -17.55677 -17.32024 -16.73239 -15.94034 -15.62208 -15.28002 -15.13807 -14.95154 -14.76485 -14.37146 -14.19640 -13.90628 -13.75700 -13.59290 -13.55227 -13.32504 -13.00435 -12.73523 -12.65854 -12.52463 -12.36734 -12.26090 -12.07699 -11.89026 -11.60241 -11.45763 -11.30371 -11.08522 -10.98060 -10.79205 -10.72150 -10.64207 -10.07174 -9.86891 -9.75609 -9.44309 -9.20089 -8.83286 -8.71485 -8.59395 -8.01392 -6.88903 -5.77682 -3.10387 1.62304 2.39666 2.61090 2.62117 3.03747 3.38923 3.42605 3.44416 4.07095 4.34277 4.39974 4.47603 4.54078 4.68838 4.82402 4.90928 4.95084 5.00005 5.10148 5.12601 5.16638 5.22217 5.28130 5.33310 5.40779 5.44486 5.46525 5.49335 5.54486 5.66047 5.70327 5.72666 5.74047 5.83799 5.90090 5.92398 5.94435 6.08715 6.34615 6.41683 6.47135 6.59984 6.63978 7.04844 7.05501 7.23513 7.30016 7.38198 7.47858 7.53722 7.66796 7.97177 8.16943 9.02832 9.69081 10.63278 11.39823 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.001899 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.096006 B =14742.515972 C =14900.995220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.095 3.905 3 N -0.299 5.299 4 N -0.477 5.477 5 H 0.437 0.563 6 C 0.103 3.897 7 C -0.095 4.095 8 C -0.217 4.217 9 C -0.060 4.060 10 C 0.514 3.486 11 O -0.537 6.537 12 N -0.614 5.614 13 C 0.118 3.882 14 C 0.045 3.955 15 N -0.522 5.522 16 C 0.019 3.981 17 C 0.129 3.871 18 N -0.610 5.610 19 C -0.217 4.217 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.919 5.919 23 Si 0.914 3.086 24 H -0.284 1.284 25 H -0.289 1.289 26 H -0.285 1.285 27 C 0.173 3.827 28 C 0.040 3.960 29 C 0.111 3.889 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.032 0.968 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.040 0.960 45 H 0.254 0.746 46 H 0.034 0.966 47 H 0.067 0.933 48 H 0.033 0.967 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 22.475 -12.556 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.072 4.072 3 N -0.122 5.122 4 N -0.184 5.184 5 H 0.280 0.720 6 C -0.026 4.026 7 C -0.153 4.153 8 C -0.229 4.229 9 C -0.100 4.100 10 C 0.302 3.698 11 O -0.413 6.413 12 N -0.349 5.349 13 C -0.005 4.005 14 C -0.084 4.084 15 N -0.247 5.247 16 C -0.089 4.089 17 C 0.002 3.998 18 N -0.337 5.337 19 C -0.345 4.345 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.566 5.566 23 Si 0.744 3.256 24 H -0.211 1.211 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.047 3.953 28 C -0.089 4.089 29 C -0.012 4.012 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.085 0.915 48 H 0.051 0.949 49 H 0.108 0.892 50 H 0.097 0.903 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.867 23.762 -11.829 26.698 hybrid contribution 1.298 -1.611 0.089 2.071 sum 4.165 22.151 -11.740 25.413 Atomic orbital electron populations 1.20200 0.86823 1.03097 1.03272 1.22140 0.96858 0.90111 0.98110 1.77264 0.86402 1.22247 1.26281 1.46062 1.07325 1.04732 1.60321 0.71963 1.20801 0.96804 0.84977 1.00008 1.20480 0.92964 0.98610 1.03263 1.19004 0.91326 0.94664 1.17861 1.19927 1.03345 0.92436 0.94338 1.20695 0.76505 0.81007 0.91630 1.90689 1.49933 1.54095 1.46584 1.48245 1.66945 1.11861 1.07807 1.21719 1.01133 0.94944 0.82685 1.22417 0.96738 0.92218 0.97040 1.62128 1.59108 1.02369 1.01138 1.24061 0.97123 0.85394 1.02367 1.22411 0.97502 0.87898 0.92014 1.45371 1.82591 1.01302 1.04400 1.18846 1.42187 0.79318 0.94130 0.90164 1.24813 1.02050 0.98095 0.95514 1.69822 1.54166 1.33878 0.98702 0.86175 0.77915 0.84711 0.76796 1.21077 1.21525 1.21124 1.22030 0.95979 0.82632 0.94663 1.22439 0.97623 0.96006 0.92814 1.21928 1.00953 0.89191 0.89151 0.90281 0.90870 0.90508 0.89972 0.90911 0.89668 0.88549 0.88197 0.90696 0.89093 0.89154 0.94935 0.91723 0.94775 0.94248 0.93553 0.94797 0.91480 0.94874 0.89236 0.90276 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.26 36.01 0.37 -0.26 16 2 C 0.09 1.06 7.22 -82.41 -0.59 0.47 16 3 N -0.30 -3.61 12.70 33.67 0.43 -3.18 16 4 N -0.48 -4.54 7.36 33.48 0.25 -4.30 16 5 H 0.44 2.73 8.96 -182.61 -1.64 1.10 16 6 C 0.10 0.97 7.21 -82.26 -0.59 0.38 16 7 C -0.09 -0.60 10.04 36.01 0.36 -0.24 16 8 C -0.22 -2.25 4.59 -105.05 -0.48 -2.74 16 9 C -0.06 -0.50 3.97 -29.03 -0.12 -0.62 16 10 C 0.51 5.99 7.70 -10.99 -0.08 5.91 16 11 O -0.54 -8.40 15.49 5.56 0.09 -8.31 16 12 N -0.61 -6.76 3.01 -172.44 -0.52 -7.27 16 13 C 0.12 1.44 6.60 -3.60 -0.02 1.41 16 14 C 0.04 0.60 5.61 -3.70 -0.02 0.58 16 15 N -0.52 -7.60 4.62 -226.09 -1.05 -8.64 16 16 C 0.02 0.35 3.52 -67.59 -0.24 0.11 16 17 C 0.13 2.55 7.12 -8.51 -0.06 2.49 16 18 N -0.61 -15.60 3.78 -184.78 -0.70 -16.30 16 19 C -0.22 -6.07 10.75 -15.06 -0.16 -6.23 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -27.21 11.51 55.49 0.64 -26.57 16 23 Si 0.91 21.97 29.55 -169.99 -5.02 16.94 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.17 4.02 7.22 -8.51 -0.06 3.96 16 28 C 0.04 0.46 5.47 -3.68 -0.02 0.44 16 29 C 0.11 1.00 6.51 -3.58 -0.02 0.97 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.49 7.25 -51.93 -0.38 0.11 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.08 0.61 7.78 -51.93 -0.40 0.20 16 36 H 0.10 0.62 7.29 -51.93 -0.38 0.24 16 37 H 0.10 0.65 7.10 -51.93 -0.37 0.28 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 1.18 7.06 -51.93 -0.37 0.81 16 40 H 0.09 1.28 8.11 -51.93 -0.42 0.86 16 41 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.06 1.23 8.13 -51.93 -0.42 0.80 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.04 0.76 7.90 -51.93 -0.41 0.35 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 46 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.07 1.74 7.12 -51.93 -0.37 1.37 16 48 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 0.99 6.82 -51.93 -0.35 0.63 16 50 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.08 0.51 6.02 -51.93 -0.31 0.20 16 LS Contribution 405.74 15.07 6.11 6.11 Total: -1.00 -35.91 405.74 -11.21 -47.13 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -9.60 Total: -1.93 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -1.85 Total: 6.31 kcal Atomic # 7 Polarization: -65.31 SS G_CDS: -0.95 Total: -66.26 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.91 -11.21 -47.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941661635.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.122 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds