Wall clock time and date at job start Wed Apr 1 2020 04:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30839 * 125.89995 * 2 1 4 4 N 1.40088 * 108.20640 * 180.25714 * 3 2 1 5 5 H 0.96996 * 126.03571 * 179.70197 * 4 3 2 6 6 C 1.34949 * 107.92123 * 359.71937 * 4 3 2 7 7 C 1.50704 * 126.12247 * 180.02562 * 6 4 3 8 8 C 1.35312 * 107.74830 * 0.02562 * 6 4 3 9 9 C 1.50701 * 126.04017 * 179.97438 * 8 6 4 10 10 C 1.50700 * 109.47301 * 89.99541 * 9 8 6 11 11 O 1.21282 * 119.99768 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99982 * 179.97438 * 10 9 8 13 13 C 1.47075 * 120.88032 * 180.02562 * 12 10 9 14 14 C 1.53241 * 108.52308 * 231.21201 * 13 12 10 15 15 N 1.46898 * 109.33951 * 306.17219 * 14 13 12 16 16 C 1.46898 * 111.00064 * 187.25568 * 15 14 13 17 17 C 1.53495 * 114.20715 * 180.02562 * 16 15 14 18 18 N 1.47066 * 87.98658 * 220.14321 * 17 16 15 19 19 C 1.36937 * 136.06113 * 206.85859 * 18 17 16 20 20 H 1.07995 * 120.00001 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00320 * 179.97438 * 19 18 17 22 22 N 1.31620 * 119.99557 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99975 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47363 * 60.00463 * 23 21 19 25 25 H 1.48506 * 109.46719 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47174 * 300.00290 * 23 21 19 27 27 C 1.47067 * 87.88528 * 27.11900 * 18 17 16 28 28 C 1.46895 * 111.27184 * 63.10496 * 15 14 13 29 29 C 1.47083 * 120.88438 * 0.03512 * 12 10 9 30 30 H 1.08996 * 109.47408 * 270.20741 * 1 2 3 31 31 H 1.09004 * 109.47006 * 30.21520 * 1 2 3 32 32 H 1.09002 * 109.46720 * 150.20681 * 1 2 3 33 33 H 1.09004 * 109.47222 * 269.97916 * 7 6 4 34 34 H 1.08998 * 109.47012 * 29.97988 * 7 6 4 35 35 H 1.08996 * 109.47097 * 149.97835 * 7 6 4 36 36 H 1.09005 * 109.47099 * 329.99963 * 9 8 6 37 37 H 1.08997 * 109.47187 * 210.00352 * 9 8 6 38 38 H 1.08999 * 109.62826 * 111.50161 * 13 12 10 39 39 H 1.09002 * 109.63321 * 350.92462 * 13 12 10 40 40 H 1.09002 * 109.49164 * 186.20946 * 14 13 12 41 41 H 1.09002 * 109.49308 * 66.13262 * 14 13 12 42 42 H 1.09006 * 113.28003 * 313.06392 * 16 15 14 43 43 H 1.09005 * 113.46950 * 105.36887 * 17 16 15 44 44 H 1.08994 * 113.52293 * 334.93371 * 17 16 15 45 45 H 0.96999 * 119.99537 * 179.97438 * 22 21 19 46 46 H 1.09007 * 113.46858 * 87.65629 * 27 18 17 47 47 H 1.08993 * 113.47208 * 218.09965 * 27 18 17 48 48 H 1.08998 * 109.49572 * 56.85259 * 28 15 14 49 49 H 1.08992 * 109.49361 * 176.93859 * 28 15 14 50 50 H 1.09005 * 109.62160 * 248.49928 * 29 12 10 51 51 H 1.09000 * 109.62522 * 9.07498 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0114 6 6 3.6142 -0.7154 -0.0033 7 6 4.8350 -1.5989 -0.0072 8 6 2.3271 -1.1330 0.0036 9 6 1.8599 -2.5657 0.0082 10 6 1.7110 -3.0411 1.4305 11 8 1.9595 -2.2902 2.3499 12 7 1.3009 -4.3003 1.6807 13 6 1.1485 -4.7842 3.0611 14 6 1.9083 -6.1078 3.1997 15 7 1.4533 -7.0410 2.1605 16 6 2.0304 -8.3766 2.3631 17 6 1.6025 -9.4128 1.3146 18 7 1.4996 -10.3958 2.4036 19 6 1.6029 -11.7565 2.5167 20 1 1.8117 -12.3566 1.6434 21 6 1.4405 -12.3646 3.7540 22 7 1.1866 -11.6331 4.8184 23 14 1.5822 -14.2208 3.9082 24 1 2.9343 -14.6520 3.4715 25 1 1.3685 -14.6175 5.3233 26 1 0.5556 -14.8684 3.0526 27 6 1.2303 -9.2748 3.3167 28 6 1.7604 -6.5332 0.8167 29 6 0.9940 -5.2270 0.5805 30 1 -0.3634 0.0037 1.0276 31 1 -0.3633 0.8881 -0.5172 32 1 -0.3633 -0.8919 -0.5106 33 1 5.1244 -1.8144 -1.0358 34 1 5.6536 -1.0898 0.5015 35 1 4.6101 -2.5317 0.5099 36 1 2.5909 -3.1880 -0.5082 37 1 0.8987 -2.6360 -0.5010 38 1 0.0924 -4.9438 3.2787 39 1 1.5611 -4.0509 3.7540 40 1 1.7158 -6.5364 4.1832 41 1 2.9771 -5.9274 3.0840 42 1 3.1022 -8.3574 2.5606 43 1 2.3838 -9.6466 0.5913 44 1 0.6464 -9.1854 0.8432 45 1 1.0727 -12.0581 5.6828 46 1 0.1748 -9.0098 3.3793 47 1 1.6950 -9.3911 4.2957 48 1 2.8312 -6.3469 0.7341 49 1 1.4606 -7.2704 0.0720 50 1 -0.0769 -5.4290 0.5601 51 1 1.3046 -4.7863 -0.3668 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941661635.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:41 Heat of formation + Delta-G solvation = 83.262688 kcal Electronic energy + Delta-G solvation = -30820.612448 eV Core-core repulsion = 26757.668960 eV Total energy + Delta-G solvation = -4062.943488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.36950 -41.11414 -40.06939 -38.05738 -35.16528 -34.39298 -34.07334 -33.73510 -32.15684 -30.29235 -29.66744 -28.57760 -27.81103 -26.77725 -26.44779 -24.44991 -24.23785 -22.47003 -21.13646 -20.81436 -20.53994 -19.57748 -18.76695 -18.27490 -18.12420 -16.98406 -16.82416 -16.49951 -16.43921 -16.01242 -15.89429 -15.75789 -15.24983 -14.91372 -14.52491 -14.46534 -14.35346 -14.17254 -14.12077 -13.86072 -13.74990 -13.33707 -13.27606 -13.22272 -13.09612 -12.94307 -12.86584 -12.80312 -12.62130 -12.52875 -12.36684 -12.19959 -12.09783 -11.76179 -11.67945 -11.43541 -10.96119 -10.84129 -10.76593 -10.17385 -9.71725 -9.30413 -9.17962 -8.91155 -7.89515 -5.23598 0.92500 1.46822 1.50757 1.56826 1.63549 1.75739 2.00213 2.20222 2.47271 2.92760 3.32411 3.55636 3.69751 3.72142 3.76242 3.78469 4.04356 4.12437 4.15713 4.23745 4.28201 4.33434 4.39947 4.45134 4.49594 4.60263 4.63308 4.70636 4.73344 4.76080 4.82501 4.84347 4.89569 4.93409 4.96117 5.00252 5.02228 5.09191 5.10642 5.19690 5.25997 5.29145 5.40855 5.52502 5.54813 5.76105 5.92533 6.18543 6.21496 6.45935 6.56469 6.76200 6.91429 7.30546 7.61068 8.62191 9.28126 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.029936 B = 0.001899 C = 0.001879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.096006 B =14742.515972 C =14900.995220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.078 3.922 3 N -0.338 5.338 4 N -0.476 5.476 5 H 0.447 0.553 6 C 0.101 3.899 7 C -0.092 4.092 8 C -0.238 4.238 9 C -0.052 4.052 10 C 0.514 3.486 11 O -0.583 6.583 12 N -0.613 5.613 13 C 0.125 3.875 14 C 0.051 3.949 15 N -0.527 5.527 16 C 0.055 3.945 17 C 0.136 3.864 18 N -0.645 5.645 19 C -0.228 4.228 20 H 0.089 0.911 21 C -0.071 4.071 22 N -0.955 5.955 23 Si 0.982 3.018 24 H -0.274 1.274 25 H -0.296 1.296 26 H -0.276 1.276 27 C 0.171 3.829 28 C 0.037 3.963 29 C 0.114 3.886 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.248 0.752 46 H 0.019 0.981 47 H 0.029 0.971 48 H 0.039 0.961 49 H 0.100 0.900 50 H 0.085 0.915 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.711 22.431 -15.566 27.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 N -0.162 5.162 4 N -0.185 5.185 5 H 0.292 0.708 6 C -0.029 4.029 7 C -0.150 4.150 8 C -0.250 4.250 9 C -0.092 4.092 10 C 0.304 3.696 11 O -0.463 6.463 12 N -0.346 5.346 13 C 0.002 3.998 14 C -0.078 4.078 15 N -0.253 5.253 16 C -0.054 4.054 17 C 0.011 3.989 18 N -0.371 5.371 19 C -0.356 4.356 20 H 0.106 0.894 21 C -0.264 4.264 22 N -0.603 5.603 23 Si 0.810 3.190 24 H -0.200 1.200 25 H -0.223 1.223 26 H -0.201 1.201 27 C 0.045 3.955 28 C -0.091 4.091 29 C -0.008 4.008 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.057 0.943 46 H 0.037 0.963 47 H 0.047 0.953 48 H 0.058 0.942 49 H 0.118 0.882 50 H 0.103 0.897 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.366 23.740 -14.905 28.232 hybrid contribution 1.164 -1.514 1.004 2.157 sum 4.530 22.226 -13.901 26.604 Atomic orbital electron populations 1.20282 0.85494 1.04530 1.03024 1.22642 0.98048 0.90407 0.97732 1.77189 0.87621 1.23461 1.27899 1.46130 1.07110 1.05266 1.60005 0.70750 1.21357 0.97827 0.85093 0.98583 1.20574 0.91920 0.97685 1.04843 1.19325 0.91619 0.95445 1.18601 1.20004 1.05495 0.91594 0.92145 1.21297 0.75216 0.80474 0.92590 1.90677 1.51957 1.55334 1.48305 1.48324 1.66511 1.12204 1.07604 1.21500 1.00701 0.93719 0.83873 1.22341 0.96833 0.92494 0.96157 1.62027 1.58931 1.00966 1.03327 1.23439 0.95799 0.87004 0.99141 1.22505 0.98596 0.86343 0.91473 1.45763 1.82723 1.01453 1.07203 1.19295 1.40904 0.80974 0.94404 0.89358 1.25709 1.02637 1.02686 0.95336 1.70033 1.55934 1.35476 0.98880 0.85097 0.78345 0.79305 0.76258 1.19971 1.22251 1.20149 1.21915 0.95520 0.84092 0.93966 1.22603 0.98557 0.97414 0.90519 1.22112 1.01078 0.87633 0.89950 0.91229 0.90325 0.88258 0.87564 0.89915 0.90200 0.85753 0.85621 0.90685 0.90154 0.90727 0.95038 0.92311 0.92935 0.92798 0.94321 0.96307 0.95258 0.94232 0.88217 0.89684 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 10.26 71.24 0.73 -0.43 16 2 C 0.08 1.67 7.22 43.10 0.31 1.98 16 3 N -0.34 -8.05 12.70 -47.38 -0.60 -8.65 16 4 N -0.48 -8.66 7.36 -48.00 -0.35 -9.01 16 5 H 0.45 5.29 8.96 -213.33 -1.91 3.38 16 6 C 0.10 1.72 7.21 41.41 0.30 2.02 16 7 C -0.09 -0.91 10.04 71.24 0.71 -0.20 16 8 C -0.24 -4.46 4.59 -20.14 -0.09 -4.56 16 9 C -0.05 -0.69 3.97 29.10 0.12 -0.57 16 10 C 0.51 10.82 7.70 87.66 0.68 11.49 16 11 O -0.58 -17.86 15.49 -3.03 -0.05 -17.91 16 12 N -0.61 -11.91 3.01 -817.86 -2.46 -14.37 16 13 C 0.13 2.97 6.60 86.35 0.57 3.53 16 14 C 0.05 1.34 5.61 86.38 0.48 1.83 16 15 N -0.53 -14.49 4.62 -869.23 -4.02 -18.51 16 16 C 0.06 1.98 3.52 45.39 0.16 2.14 16 17 C 0.14 5.15 7.12 83.18 0.59 5.74 16 18 N -0.64 -33.02 3.78 -738.53 -2.79 -35.81 16 19 C -0.23 -12.73 10.75 84.03 0.90 -11.82 16 20 H 0.09 4.64 7.83 -2.91 -0.02 4.61 16 21 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 22 N -0.95 -58.34 11.51 21.65 0.25 -58.09 16 23 Si 0.98 45.53 29.55 68.60 2.03 47.56 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 C 0.17 8.19 7.22 83.18 0.60 8.79 16 28 C 0.04 0.71 5.47 86.40 0.47 1.18 16 29 C 0.11 1.57 6.51 86.36 0.56 2.13 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 1.01 7.25 -2.39 -0.02 1.00 16 33 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 0.92 7.78 -2.39 -0.02 0.90 16 36 H 0.12 0.96 7.29 -2.38 -0.02 0.95 16 37 H 0.13 1.02 7.10 -2.39 -0.02 1.01 16 38 H 0.07 1.77 8.14 -2.39 -0.02 1.76 16 39 H 0.08 2.10 7.06 -2.39 -0.02 2.08 16 40 H 0.07 2.19 8.11 -2.39 -0.02 2.17 16 41 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 2.19 8.13 -2.38 -0.02 2.17 16 43 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 44 H 0.05 1.93 7.90 -2.39 -0.02 1.91 16 45 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 46 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.03 1.59 7.12 -2.39 -0.02 1.58 16 48 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.10 1.75 6.82 -2.39 -0.02 1.74 16 50 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 51 H 0.13 0.76 6.02 -2.39 -0.01 0.75 16 Total: -1.00 -81.08 405.74 -1.41 -82.48 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -0.97 Total: 12.66 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: 7.56 Total: 19.65 kcal Atomic # 7 Polarization: -134.47 SS G_CDS: -9.98 Total: -144.45 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.05 Total: -17.91 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -81.08 -1.41 -82.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941661635.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.747 kcal (2) G-P(sol) polarization free energy of solvation -81.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds