Wall clock time and date at job start Wed Apr 1 2020 05:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30837 * 125.96126 * 2 1 4 4 C 1.33239 * 109.83270 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.52966 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47560 * 270.03118 * 5 4 3 7 7 O 1.21278 * 119.99910 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00136 * 179.97438 * 6 5 4 9 9 C 1.46934 * 120.64431 * 359.72420 * 8 6 5 10 10 C 1.53621 * 108.53919 * 126.32174 * 9 8 6 11 11 C 1.53044 * 109.25921 * 54.86686 * 10 9 8 12 12 C 1.53027 * 109.43787 * 58.57397 * 11 10 9 13 13 C 1.53192 * 109.33218 * 181.22621 * 12 11 10 14 14 N 1.46932 * 108.78338 * 305.37655 * 13 12 11 15 15 C 1.36934 * 120.63979 * 233.61507 * 14 13 12 16 16 H 1.08004 * 120.00248 * 27.68373 * 15 14 13 17 17 C 1.38809 * 120.00112 * 207.68859 * 15 14 13 18 18 N 1.31620 * 120.00065 * 17.36450 * 17 15 14 19 19 Si 1.86801 * 120.00167 * 197.37099 * 17 15 14 20 20 H 1.48489 * 109.47202 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47156 * 119.99835 * 19 17 15 22 22 H 1.48499 * 109.46957 * 239.99602 * 19 17 15 23 23 C 1.46919 * 118.71692 * 53.63409 * 14 13 12 24 24 C 1.53042 * 109.38809 * 178.59775 * 11 10 9 25 25 C 1.53028 * 109.55099 * 298.55745 * 11 10 9 26 26 C 1.46930 * 120.64411 * 179.97438 * 8 6 5 27 27 N 1.30712 * 108.94353 * 0.02562 * 4 3 2 28 28 N 1.34422 * 125.96398 * 179.97438 * 2 1 3 29 29 H 0.97002 * 126.82786 * 359.97438 * 28 2 1 30 30 H 1.08991 * 109.46975 * 270.03777 * 1 2 3 31 31 H 1.09000 * 109.46746 * 30.04339 * 1 2 3 32 32 H 1.09001 * 109.46737 * 150.03831 * 1 2 3 33 33 H 1.09008 * 109.46515 * 30.03282 * 5 4 3 34 34 H 1.08994 * 109.47052 * 150.02684 * 5 4 3 35 35 H 1.08992 * 109.58558 * 246.15759 * 9 8 6 36 36 H 1.08996 * 109.58376 * 6.58316 * 9 8 6 37 37 H 1.08996 * 109.63119 * 294.86808 * 10 9 8 38 38 H 1.08996 * 109.42232 * 174.74191 * 10 9 8 39 39 H 1.08994 * 109.49753 * 301.18720 * 12 11 10 40 40 H 1.08999 * 109.49545 * 61.27687 * 12 11 10 41 41 H 1.09003 * 109.58378 * 185.58356 * 13 12 11 42 42 H 1.09002 * 109.69806 * 65.23771 * 13 12 11 43 43 H 0.96998 * 120.00377 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.58989 * 186.57012 * 23 14 13 45 45 H 1.09003 * 109.70070 * 66.21832 * 23 14 13 46 46 H 1.08998 * 109.49725 * 298.68966 * 24 11 10 47 47 H 1.09000 * 109.49747 * 58.77542 * 24 11 10 48 48 H 1.09000 * 109.49636 * 301.34925 * 25 11 10 49 49 H 1.08996 * 109.49689 * 181.25416 * 25 11 10 50 50 H 1.08999 * 109.58503 * 353.40653 * 26 8 6 51 51 H 1.08996 * 109.58566 * 113.69199 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6889 0.0006 5 6 4.7372 1.6237 0.0002 6 6 5.1312 1.9350 -1.4207 7 8 4.5133 1.4456 -2.3423 8 7 6.1701 2.7574 -1.6672 9 6 6.9247 3.3629 -0.5614 10 6 8.4152 3.0460 -0.7560 11 6 8.8536 3.5140 -2.1456 12 6 8.5964 5.0163 -2.2816 13 6 9.0075 5.4763 -3.6839 14 7 10.4018 5.0789 -3.9223 15 6 11.3335 6.0027 -4.3144 16 1 11.2155 7.0399 -4.0372 17 6 12.4294 5.6062 -5.0685 18 7 12.4142 4.4477 -5.6929 19 14 13.9259 6.7167 -5.1968 20 1 13.6935 7.9536 -4.4087 21 1 15.1165 6.0065 -4.6645 22 1 14.1573 7.0731 -6.6197 23 6 10.7771 3.6712 -3.7321 24 6 10.3465 3.2314 -2.3293 25 6 8.0575 2.7616 -3.2141 26 6 6.5667 3.0701 -3.0470 27 7 3.6195 -0.6167 0.0004 28 7 2.2964 -1.0880 0.0005 29 1 2.0095 -2.0146 0.0012 30 1 -0.3633 0.0007 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3633 -0.8904 -0.5133 33 1 4.4700 2.5473 0.5139 34 1 5.5743 1.1513 0.5141 35 1 6.7744 4.4424 -0.5645 36 1 6.5819 2.9469 0.3859 37 1 8.5759 1.9717 -0.6664 38 1 8.9986 3.5660 0.0039 39 1 7.5365 5.2193 -2.1284 40 1 9.1817 5.5546 -1.5362 41 1 8.9196 6.5606 -3.7531 42 1 8.3621 5.0092 -4.4277 43 1 13.1801 4.1704 -6.2195 44 1 11.8570 3.5640 -3.8333 45 1 10.2771 3.0537 -4.4783 46 1 10.9162 3.7856 -1.5835 47 1 10.5320 2.1639 -2.2099 48 1 8.2216 1.6898 -3.1026 49 1 8.3860 3.0793 -4.2036 50 1 5.9876 2.4606 -3.7406 51 1 6.3853 4.1257 -3.2489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957545309.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:41 Heat of formation + Delta-G solvation = 68.035604 kcal Electronic energy + Delta-G solvation = -31381.161453 eV Core-core repulsion = 27317.557669 eV Total energy + Delta-G solvation = -4063.603784 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.41294 -40.48654 -38.69641 -35.90566 -33.99544 -33.51114 -32.64052 -31.39868 -31.22748 -30.13900 -29.69646 -28.18875 -27.61647 -25.02521 -23.54160 -23.18890 -22.04366 -21.80546 -21.11469 -20.43565 -19.15512 -18.13863 -17.74778 -17.31143 -16.42652 -15.99724 -15.66340 -15.52979 -14.85662 -14.59811 -14.25996 -14.17822 -14.07738 -13.81536 -13.70244 -13.50327 -13.28052 -13.16443 -13.04899 -12.89501 -12.77899 -12.25654 -12.13921 -12.07094 -11.58418 -11.37049 -11.30247 -11.19069 -10.99720 -10.73084 -10.47367 -10.42368 -10.37004 -10.28397 -10.11037 -9.97782 -9.91520 -9.73850 -9.53521 -9.45092 -9.35315 -8.47184 -8.41592 -6.61278 -5.75732 -3.17108 1.31547 2.32592 2.49644 2.61969 3.11127 3.38270 3.46425 3.48366 3.65505 4.22534 4.42860 4.49604 4.52078 4.82161 4.86276 4.94786 5.03142 5.08390 5.09582 5.29639 5.32438 5.36056 5.38917 5.40273 5.50145 5.52933 5.68121 5.82988 5.91355 5.95310 5.99487 6.07090 6.11248 6.15345 6.17283 6.25010 6.41176 6.43510 6.59572 6.61031 6.71514 6.73791 6.75612 6.89408 6.95487 7.04587 7.40069 7.43845 7.71997 7.83026 7.83277 8.16553 8.48507 9.25111 9.89166 10.45857 11.32437 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.036246 B = 0.002021 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.323972 B =13853.447899 C =13867.429631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.282 3.718 3 N -0.531 5.531 4 C 0.253 3.747 5 C -0.049 4.049 6 C 0.523 3.477 7 O -0.537 6.537 8 N -0.604 5.604 9 C 0.104 3.896 10 C -0.125 4.125 11 C -0.046 4.046 12 C -0.125 4.125 13 C 0.144 3.856 14 N -0.591 5.591 15 C -0.249 4.249 16 H 0.065 0.935 17 C 0.000 4.000 18 N -0.902 5.902 19 Si 0.900 3.100 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.170 3.830 24 C -0.129 4.129 25 C -0.124 4.124 26 C 0.113 3.887 27 N -0.304 5.304 28 N -0.482 5.482 29 H 0.439 0.561 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.019 0.981 43 H 0.252 0.748 44 H 0.084 0.916 45 H 0.019 0.981 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.058 0.942 49 H 0.090 0.910 50 H 0.086 0.914 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.586 -8.881 15.646 27.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.260 5.260 4 C -0.031 4.031 5 C -0.091 4.091 6 C 0.309 3.691 7 O -0.414 6.414 8 N -0.338 5.338 9 C -0.019 4.019 10 C -0.163 4.163 11 C -0.046 4.046 12 C -0.164 4.164 13 C 0.018 3.982 14 N -0.314 5.314 15 C -0.378 4.378 16 H 0.082 0.918 17 C -0.198 4.198 18 N -0.547 5.547 19 Si 0.730 3.270 20 H -0.203 1.203 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.045 3.955 24 C -0.169 4.169 25 C -0.162 4.162 26 C -0.008 4.008 27 N -0.133 5.133 28 N -0.201 5.201 29 H 0.285 0.715 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.036 0.964 43 H 0.062 0.938 44 H 0.103 0.897 45 H 0.037 0.963 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.108 0.892 50 H 0.104 0.896 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.200 -9.205 15.033 26.810 hybrid contribution 0.624 -0.178 -0.092 0.656 sum -19.576 -9.383 14.941 26.353 Atomic orbital electron populations 1.20391 0.83611 1.05139 1.04456 1.24368 0.96611 0.82783 0.95856 1.70294 1.01265 1.29568 1.24902 1.23277 0.92620 0.89727 0.97431 1.19947 0.93609 0.98748 0.96791 1.20081 0.80021 0.78615 0.90371 1.90712 1.52872 1.51655 1.46151 1.48083 1.30897 1.46728 1.08109 1.21967 0.92354 0.98765 0.88803 1.22109 0.94242 1.01430 0.98558 1.20373 0.96068 0.95391 0.92803 1.22142 0.99207 0.94638 1.00430 1.20921 0.87216 0.97540 0.92520 1.44030 1.03359 1.05432 1.78538 1.19217 1.01490 0.90759 1.26382 0.91766 1.25019 1.00360 0.97457 0.96954 1.70043 1.29874 1.22023 1.32787 0.86261 0.83334 0.80120 0.77298 1.20317 1.21649 1.21823 1.20779 1.01059 0.84107 0.89597 1.22221 0.93682 0.99067 1.01893 1.22024 0.93052 0.99968 1.01125 1.21697 0.96152 1.01159 0.81823 1.77989 0.96673 1.12235 1.26374 1.47928 1.04263 1.10001 1.57888 0.71524 0.88995 0.88267 0.89868 0.86067 0.86489 0.90562 0.90281 0.91836 0.90834 0.93003 0.92359 0.93212 0.96359 0.93768 0.89744 0.96250 0.92703 0.93550 0.92326 0.89184 0.89592 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.32 10.51 36.01 0.38 0.06 16 2 C 0.28 2.65 8.24 -155.70 -1.28 1.37 16 3 N -0.53 -6.81 11.19 -8.16 -0.09 -6.90 16 4 C 0.25 3.33 6.63 -156.86 -1.04 2.29 16 5 C -0.05 -0.53 4.67 -29.04 -0.14 -0.66 16 6 C 0.52 7.38 7.69 -10.99 -0.08 7.30 16 7 O -0.54 -9.84 15.45 5.56 0.09 -9.76 16 8 N -0.60 -7.77 2.97 -172.53 -0.51 -8.29 16 9 C 0.10 1.06 5.90 -3.48 -0.02 1.03 16 10 C -0.13 -1.49 4.92 -26.39 -0.13 -1.62 16 11 C -0.05 -0.70 0.51 -154.44 -0.08 -0.78 16 12 C -0.13 -2.00 4.15 -26.62 -0.11 -2.11 16 13 C 0.14 2.90 6.04 -3.71 -0.02 2.88 16 14 N -0.59 -14.35 2.99 -172.32 -0.52 -14.87 16 15 C -0.25 -6.74 9.59 -15.06 -0.14 -6.89 16 16 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 17 C 0.00 0.01 4.91 -17.43 -0.09 -0.07 16 18 N -0.90 -26.11 11.19 55.49 0.62 -25.49 16 19 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 23 C 0.17 3.94 4.84 -3.72 -0.02 3.92 16 24 C -0.13 -2.35 4.90 -26.61 -0.13 -2.48 16 25 C -0.12 -1.94 4.14 -26.64 -0.11 -2.05 16 26 C 0.11 1.64 5.96 -3.73 -0.02 1.62 16 27 N -0.30 -3.99 12.80 32.42 0.41 -3.58 16 28 N -0.48 -4.49 7.45 32.62 0.24 -4.25 16 29 H 0.44 2.31 8.96 -182.33 -1.63 0.68 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 33 H 0.12 1.02 7.93 -51.92 -0.41 0.61 16 34 H 0.12 1.01 7.71 -51.93 -0.40 0.61 16 35 H 0.08 0.74 6.66 -51.93 -0.35 0.40 16 36 H 0.08 0.58 5.94 -51.93 -0.31 0.27 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.05 0.72 4.98 -51.93 -0.26 0.46 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 42 H 0.02 0.38 6.74 -51.93 -0.35 0.03 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.08 2.24 6.03 -51.93 -0.31 1.92 16 45 H 0.02 0.47 6.67 -51.93 -0.35 0.13 16 46 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 49 H 0.09 1.63 4.99 -51.93 -0.26 1.37 16 50 H 0.09 1.36 7.01 -51.93 -0.36 1.00 16 51 H 0.07 1.01 6.74 -51.93 -0.35 0.66 16 LS Contribution 386.29 15.07 5.82 5.82 Total: -1.00 -36.13 386.29 -11.11 -47.23 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -9.11 Total: -0.37 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -3.04 Total: 3.81 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.16 Total: -63.37 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.13 -11.11 -47.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957545309.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.270 kcal (2) G-P(sol) polarization free energy of solvation -36.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds