Wall clock time and date at job start Wed Apr 1 2020 05:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30837 * 125.96126 * 2 1 4 4 C 1.33239 * 109.83270 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.52966 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47560 * 270.03118 * 5 4 3 7 7 O 1.21278 * 119.99910 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00136 * 179.97438 * 6 5 4 9 9 C 1.46934 * 120.64431 * 359.72420 * 8 6 5 10 10 C 1.53621 * 108.53919 * 126.32174 * 9 8 6 11 11 C 1.53044 * 109.25921 * 54.86686 * 10 9 8 12 12 C 1.53027 * 109.43787 * 58.57397 * 11 10 9 13 13 C 1.53192 * 109.33218 * 181.22621 * 12 11 10 14 14 N 1.46932 * 108.78338 * 305.37655 * 13 12 11 15 15 C 1.36934 * 120.63979 * 233.61507 * 14 13 12 16 16 H 1.08004 * 120.00248 * 27.68373 * 15 14 13 17 17 C 1.38809 * 120.00112 * 207.68859 * 15 14 13 18 18 N 1.31620 * 120.00065 * 17.36450 * 17 15 14 19 19 Si 1.86801 * 120.00167 * 197.37099 * 17 15 14 20 20 H 1.48489 * 109.47202 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47156 * 119.99835 * 19 17 15 22 22 H 1.48499 * 109.46957 * 239.99602 * 19 17 15 23 23 C 1.46919 * 118.71692 * 53.63409 * 14 13 12 24 24 C 1.53042 * 109.38809 * 178.59775 * 11 10 9 25 25 C 1.53028 * 109.55099 * 298.55745 * 11 10 9 26 26 C 1.46930 * 120.64411 * 179.97438 * 8 6 5 27 27 N 1.30712 * 108.94353 * 0.02562 * 4 3 2 28 28 N 1.34422 * 125.96398 * 179.97438 * 2 1 3 29 29 H 0.97002 * 126.82786 * 359.97438 * 28 2 1 30 30 H 1.08991 * 109.46975 * 270.03777 * 1 2 3 31 31 H 1.09000 * 109.46746 * 30.04339 * 1 2 3 32 32 H 1.09001 * 109.46737 * 150.03831 * 1 2 3 33 33 H 1.09008 * 109.46515 * 30.03282 * 5 4 3 34 34 H 1.08994 * 109.47052 * 150.02684 * 5 4 3 35 35 H 1.08992 * 109.58558 * 246.15759 * 9 8 6 36 36 H 1.08996 * 109.58376 * 6.58316 * 9 8 6 37 37 H 1.08996 * 109.63119 * 294.86808 * 10 9 8 38 38 H 1.08996 * 109.42232 * 174.74191 * 10 9 8 39 39 H 1.08994 * 109.49753 * 301.18720 * 12 11 10 40 40 H 1.08999 * 109.49545 * 61.27687 * 12 11 10 41 41 H 1.09003 * 109.58378 * 185.58356 * 13 12 11 42 42 H 1.09002 * 109.69806 * 65.23771 * 13 12 11 43 43 H 0.96998 * 120.00377 * 180.02562 * 18 17 15 44 44 H 1.08994 * 109.58989 * 186.57012 * 23 14 13 45 45 H 1.09003 * 109.70070 * 66.21832 * 23 14 13 46 46 H 1.08998 * 109.49725 * 298.68966 * 24 11 10 47 47 H 1.09000 * 109.49747 * 58.77542 * 24 11 10 48 48 H 1.09000 * 109.49636 * 301.34925 * 25 11 10 49 49 H 1.08996 * 109.49689 * 181.25416 * 25 11 10 50 50 H 1.08999 * 109.58503 * 353.40653 * 26 8 6 51 51 H 1.08996 * 109.58566 * 113.69199 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6889 0.0006 5 6 4.7372 1.6237 0.0002 6 6 5.1312 1.9350 -1.4207 7 8 4.5133 1.4456 -2.3423 8 7 6.1701 2.7574 -1.6672 9 6 6.9247 3.3629 -0.5614 10 6 8.4152 3.0460 -0.7560 11 6 8.8536 3.5140 -2.1456 12 6 8.5964 5.0163 -2.2816 13 6 9.0075 5.4763 -3.6839 14 7 10.4018 5.0789 -3.9223 15 6 11.3335 6.0027 -4.3144 16 1 11.2155 7.0399 -4.0372 17 6 12.4294 5.6062 -5.0685 18 7 12.4142 4.4477 -5.6929 19 14 13.9259 6.7167 -5.1968 20 1 13.6935 7.9536 -4.4087 21 1 15.1165 6.0065 -4.6645 22 1 14.1573 7.0731 -6.6197 23 6 10.7771 3.6712 -3.7321 24 6 10.3465 3.2314 -2.3293 25 6 8.0575 2.7616 -3.2141 26 6 6.5667 3.0701 -3.0470 27 7 3.6195 -0.6167 0.0004 28 7 2.2964 -1.0880 0.0005 29 1 2.0095 -2.0146 0.0012 30 1 -0.3633 0.0007 1.0276 31 1 -0.3633 0.8896 -0.5145 32 1 -0.3633 -0.8904 -0.5133 33 1 4.4700 2.5473 0.5139 34 1 5.5743 1.1513 0.5141 35 1 6.7744 4.4424 -0.5645 36 1 6.5819 2.9469 0.3859 37 1 8.5759 1.9717 -0.6664 38 1 8.9986 3.5660 0.0039 39 1 7.5365 5.2193 -2.1284 40 1 9.1817 5.5546 -1.5362 41 1 8.9196 6.5606 -3.7531 42 1 8.3621 5.0092 -4.4277 43 1 13.1801 4.1704 -6.2195 44 1 11.8570 3.5640 -3.8333 45 1 10.2771 3.0537 -4.4783 46 1 10.9162 3.7856 -1.5835 47 1 10.5320 2.1639 -2.2099 48 1 8.2216 1.6898 -3.1026 49 1 8.3860 3.0793 -4.2036 50 1 5.9876 2.4606 -3.7406 51 1 6.3853 4.1257 -3.2489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957545309.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:40 Heat of formation + Delta-G solvation = 43.946008 kcal Electronic energy + Delta-G solvation = -31382.206056 eV Core-core repulsion = 27317.557669 eV Total energy + Delta-G solvation = -4064.648387 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.17734 -41.64323 -39.98000 -37.36734 -35.14201 -34.70904 -33.35599 -33.01970 -32.40301 -31.60947 -30.72185 -29.36260 -28.55464 -26.65887 -24.91519 -24.40255 -23.52637 -22.76136 -22.15564 -21.64843 -20.28286 -19.20171 -18.85075 -18.59555 -17.91797 -17.02174 -16.84704 -16.53761 -16.41083 -15.82052 -15.49041 -15.34664 -15.24914 -15.13612 -14.89672 -14.66382 -14.50097 -14.37610 -14.13522 -13.65237 -13.61376 -13.24535 -13.17546 -13.10556 -13.00956 -12.86482 -12.75011 -12.67164 -12.55421 -12.20698 -12.09975 -12.04168 -11.73382 -11.63476 -11.29118 -11.14503 -11.11008 -11.04840 -10.89231 -10.79437 -10.47643 -10.43428 -9.57618 -8.60712 -7.84195 -5.28464 0.56370 1.45554 1.47509 1.57905 1.58055 1.61664 1.74257 2.17877 2.52668 2.99862 3.29404 3.51094 3.59097 3.75247 3.84875 3.85664 3.88656 3.95519 4.18723 4.30937 4.34324 4.39489 4.41059 4.52700 4.60039 4.67580 4.71446 4.74850 4.75798 4.79746 4.83459 4.86976 4.94703 5.02808 5.05876 5.10826 5.14503 5.21575 5.24818 5.34143 5.34854 5.40667 5.48607 5.51234 5.61287 5.66628 5.70687 5.86456 6.20642 6.42228 6.42343 7.06387 7.13165 7.18578 7.92132 8.42965 9.21358 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.036246 B = 0.002021 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.323972 B =13853.447899 C =13867.429631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.568 5.568 4 C 0.236 3.764 5 C -0.043 4.043 6 C 0.521 3.479 7 O -0.588 6.588 8 N -0.600 5.600 9 C 0.101 3.899 10 C -0.118 4.118 11 C -0.042 4.042 12 C -0.110 4.110 13 C 0.138 3.862 14 N -0.607 5.607 15 C -0.255 4.255 16 H 0.066 0.934 17 C -0.055 4.055 18 N -0.937 5.937 19 Si 0.964 3.036 20 H -0.265 1.265 21 H -0.291 1.291 22 H -0.295 1.295 23 C 0.178 3.822 24 C -0.117 4.117 25 C -0.114 4.114 26 C 0.122 3.878 27 N -0.340 5.340 28 N -0.476 5.476 29 H 0.454 0.546 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.011 0.989 43 H 0.247 0.753 44 H 0.045 0.955 45 H -0.006 1.006 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.052 0.948 49 H 0.056 0.944 50 H 0.065 0.935 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.329 -8.421 18.977 30.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.298 5.298 4 C -0.048 4.048 5 C -0.085 4.085 6 C 0.309 3.691 7 O -0.469 6.469 8 N -0.333 5.333 9 C -0.020 4.020 10 C -0.156 4.156 11 C -0.042 4.042 12 C -0.149 4.149 13 C 0.013 3.987 14 N -0.331 5.331 15 C -0.386 4.386 16 H 0.084 0.916 17 C -0.250 4.250 18 N -0.584 5.584 19 Si 0.793 3.207 20 H -0.189 1.189 21 H -0.218 1.218 22 H -0.223 1.223 23 C 0.052 3.948 24 C -0.156 4.156 25 C -0.152 4.152 26 C -0.001 4.001 27 N -0.170 5.170 28 N -0.196 5.196 29 H 0.303 0.697 30 H 0.133 0.867 31 H 0.115 0.885 32 H 0.128 0.872 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.029 0.971 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.012 0.988 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.083 0.917 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.965 -8.743 18.413 29.965 hybrid contribution 1.075 -0.359 -1.203 1.653 sum -20.890 -9.102 17.209 28.555 Atomic orbital electron populations 1.20644 0.80072 1.06310 1.06265 1.25259 0.98328 0.82035 0.93656 1.70295 1.01621 1.31270 1.26650 1.23706 0.93490 0.90081 0.97488 1.20070 0.93925 0.99965 0.94536 1.20683 0.79444 0.77683 0.91320 1.90690 1.54639 1.53556 1.47996 1.48136 1.30812 1.46407 1.07922 1.22252 0.90594 0.99795 0.89335 1.22040 0.95768 1.01829 0.95968 1.20331 0.93681 0.95022 0.95164 1.21989 1.00910 0.94801 0.97194 1.21099 0.84991 0.97422 0.95159 1.44289 1.04817 1.05343 1.78664 1.19554 1.02144 0.91370 1.25513 0.91615 1.25774 1.03057 0.98938 0.97245 1.70207 1.30298 1.23861 1.33991 0.85248 0.79804 0.78784 0.76883 1.18931 1.21816 1.22266 1.20556 0.98352 0.83683 0.92181 1.22032 0.95983 0.99536 0.98077 1.21856 0.94138 0.99542 0.99680 1.21445 0.94622 1.00987 0.83053 1.77868 0.98864 1.12657 1.27590 1.47872 1.03285 1.11009 1.57437 0.69703 0.86677 0.88491 0.87234 0.83218 0.83965 0.89093 0.86286 0.91503 0.88791 0.90026 0.91969 0.93487 0.97072 0.94355 0.93662 0.98808 0.92639 0.92442 0.92948 0.92541 0.91650 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.51 71.24 0.75 0.32 16 2 C 0.29 4.89 8.24 138.23 1.14 6.03 16 3 N -0.57 -13.82 11.19 -179.73 -2.01 -15.83 16 4 C 0.24 5.88 6.63 138.63 0.92 6.80 16 5 C -0.04 -0.82 4.67 29.10 0.14 -0.68 16 6 C 0.52 13.81 7.69 87.66 0.67 14.49 16 7 O -0.59 -21.62 15.45 -3.02 -0.05 -21.67 16 8 N -0.60 -13.96 2.97 -818.14 -2.43 -16.39 16 9 C 0.10 1.59 5.90 86.51 0.51 2.10 16 10 C -0.12 -2.33 4.92 30.82 0.15 -2.18 16 11 C -0.04 -1.20 0.51 -52.13 -0.03 -1.22 16 12 C -0.11 -3.27 4.15 30.67 0.13 -3.15 16 13 C 0.14 5.56 6.04 86.36 0.52 6.08 16 14 N -0.61 -30.20 2.99 -699.11 -2.09 -32.29 16 15 C -0.26 -14.09 9.59 84.03 0.81 -13.28 16 16 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16 17 C -0.06 -3.13 4.91 84.86 0.42 -2.71 16 18 N -0.94 -56.51 11.19 21.65 0.24 -56.27 16 19 Si 0.96 45.44 29.59 68.60 2.03 47.47 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 23 C 0.18 8.56 4.84 86.36 0.42 8.98 16 24 C -0.12 -4.21 4.90 30.67 0.15 -4.06 16 25 C -0.11 -3.58 4.14 30.66 0.13 -3.45 16 26 C 0.12 3.44 5.96 86.35 0.51 3.96 16 27 N -0.34 -8.60 12.80 -51.34 -0.66 -9.26 16 28 N -0.48 -8.23 7.45 -50.71 -0.38 -8.61 16 29 H 0.45 4.13 8.96 -213.09 -1.91 2.22 16 30 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.15 1.90 7.93 -2.38 -0.02 1.88 16 34 H 0.14 1.90 7.71 -2.39 -0.02 1.88 16 35 H 0.09 1.26 6.66 -2.39 -0.02 1.24 16 36 H 0.12 1.02 5.94 -2.39 -0.01 1.01 16 37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.97 4.98 -2.39 -0.01 1.96 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 42 H 0.01 0.47 6.74 -2.39 -0.02 0.46 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.04 2.52 6.03 -2.39 -0.01 2.50 16 45 H -0.01 -0.32 6.67 -2.39 -0.02 -0.33 16 46 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 49 H 0.06 2.15 4.99 -2.39 -0.01 2.14 16 50 H 0.06 2.14 7.01 -2.39 -0.02 2.12 16 51 H 0.08 2.10 6.74 -2.39 -0.02 2.08 16 Total: -1.00 -83.91 386.29 1.04 -82.86 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -0.95 Total: 11.95 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 7.33 Total: 18.03 kcal Atomic # 7 Polarization: -131.32 SS G_CDS: -7.32 Total: -138.65 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.67 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -83.91 1.04 -82.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957545309.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.809 kcal (2) G-P(sol) polarization free energy of solvation -83.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds