Wall clock time and date at job start Wed Apr 1 2020 05:27:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.30837 * 125.96126 * 2 1
4 4 C 1.33239 * 109.83270 * 179.97438 * 3 2 1
5 5 C 1.50697 * 125.52966 * 179.97438 * 4 3 2
6 6 C 1.50696 * 109.47560 * 270.03118 * 5 4 3
7 7 O 1.21278 * 119.99910 * 359.97438 * 6 5 4
8 8 N 1.34776 * 120.00136 * 179.97438 * 6 5 4
9 9 C 1.46934 * 120.64431 * 359.72420 * 8 6 5
10 10 C 1.53621 * 108.53919 * 126.32174 * 9 8 6
11 11 C 1.53044 * 109.25921 * 54.86686 * 10 9 8
12 12 C 1.53027 * 109.43787 * 58.57397 * 11 10 9
13 13 C 1.53192 * 109.33218 * 181.22621 * 12 11 10
14 14 N 1.46932 * 108.78338 * 305.37655 * 13 12 11
15 15 C 1.36934 * 120.63979 * 233.61507 * 14 13 12
16 16 H 1.08004 * 120.00248 * 27.68373 * 15 14 13
17 17 C 1.38809 * 120.00112 * 207.68859 * 15 14 13
18 18 N 1.31620 * 120.00065 * 17.36450 * 17 15 14
19 19 Si 1.86801 * 120.00167 * 197.37099 * 17 15 14
20 20 H 1.48489 * 109.47202 * 359.97438 * 19 17 15
21 21 H 1.48504 * 109.47156 * 119.99835 * 19 17 15
22 22 H 1.48499 * 109.46957 * 239.99602 * 19 17 15
23 23 C 1.46919 * 118.71692 * 53.63409 * 14 13 12
24 24 C 1.53042 * 109.38809 * 178.59775 * 11 10 9
25 25 C 1.53028 * 109.55099 * 298.55745 * 11 10 9
26 26 C 1.46930 * 120.64411 * 179.97438 * 8 6 5
27 27 N 1.30712 * 108.94353 * 0.02562 * 4 3 2
28 28 N 1.34422 * 125.96398 * 179.97438 * 2 1 3
29 29 H 0.97002 * 126.82786 * 359.97438 * 28 2 1
30 30 H 1.08991 * 109.46975 * 270.03777 * 1 2 3
31 31 H 1.09000 * 109.46746 * 30.04339 * 1 2 3
32 32 H 1.09001 * 109.46737 * 150.03831 * 1 2 3
33 33 H 1.09008 * 109.46515 * 30.03282 * 5 4 3
34 34 H 1.08994 * 109.47052 * 150.02684 * 5 4 3
35 35 H 1.08992 * 109.58558 * 246.15759 * 9 8 6
36 36 H 1.08996 * 109.58376 * 6.58316 * 9 8 6
37 37 H 1.08996 * 109.63119 * 294.86808 * 10 9 8
38 38 H 1.08996 * 109.42232 * 174.74191 * 10 9 8
39 39 H 1.08994 * 109.49753 * 301.18720 * 12 11 10
40 40 H 1.08999 * 109.49545 * 61.27687 * 12 11 10
41 41 H 1.09003 * 109.58378 * 185.58356 * 13 12 11
42 42 H 1.09002 * 109.69806 * 65.23771 * 13 12 11
43 43 H 0.96998 * 120.00377 * 180.02562 * 18 17 15
44 44 H 1.08994 * 109.58989 * 186.57012 * 23 14 13
45 45 H 1.09003 * 109.70070 * 66.21832 * 23 14 13
46 46 H 1.08998 * 109.49725 * 298.68966 * 24 11 10
47 47 H 1.09000 * 109.49747 * 58.77542 * 24 11 10
48 48 H 1.09000 * 109.49636 * 301.34925 * 25 11 10
49 49 H 1.08996 * 109.49689 * 181.25416 * 25 11 10
50 50 H 1.08999 * 109.58503 * 353.40653 * 26 8 6
51 51 H 1.08996 * 109.58566 * 113.69199 * 26 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2753 1.0590 0.0000
4 6 3.5553 0.6889 0.0006
5 6 4.7372 1.6237 0.0002
6 6 5.1312 1.9350 -1.4207
7 8 4.5133 1.4456 -2.3423
8 7 6.1701 2.7574 -1.6672
9 6 6.9247 3.3629 -0.5614
10 6 8.4152 3.0460 -0.7560
11 6 8.8536 3.5140 -2.1456
12 6 8.5964 5.0163 -2.2816
13 6 9.0075 5.4763 -3.6839
14 7 10.4018 5.0789 -3.9223
15 6 11.3335 6.0027 -4.3144
16 1 11.2155 7.0399 -4.0372
17 6 12.4294 5.6062 -5.0685
18 7 12.4142 4.4477 -5.6929
19 14 13.9259 6.7167 -5.1968
20 1 13.6935 7.9536 -4.4087
21 1 15.1165 6.0065 -4.6645
22 1 14.1573 7.0731 -6.6197
23 6 10.7771 3.6712 -3.7321
24 6 10.3465 3.2314 -2.3293
25 6 8.0575 2.7616 -3.2141
26 6 6.5667 3.0701 -3.0470
27 7 3.6195 -0.6167 0.0004
28 7 2.2964 -1.0880 0.0005
29 1 2.0095 -2.0146 0.0012
30 1 -0.3633 0.0007 1.0276
31 1 -0.3633 0.8896 -0.5145
32 1 -0.3633 -0.8904 -0.5133
33 1 4.4700 2.5473 0.5139
34 1 5.5743 1.1513 0.5141
35 1 6.7744 4.4424 -0.5645
36 1 6.5819 2.9469 0.3859
37 1 8.5759 1.9717 -0.6664
38 1 8.9986 3.5660 0.0039
39 1 7.5365 5.2193 -2.1284
40 1 9.1817 5.5546 -1.5362
41 1 8.9196 6.5606 -3.7531
42 1 8.3621 5.0092 -4.4277
43 1 13.1801 4.1704 -6.2195
44 1 11.8570 3.5640 -3.8333
45 1 10.2771 3.0537 -4.4783
46 1 10.9162 3.7856 -1.5835
47 1 10.5320 2.1639 -2.2099
48 1 8.2216 1.6898 -3.1026
49 1 8.3860 3.0793 -4.2036
50 1 5.9876 2.4606 -3.7406
51 1 6.3853 4.1257 -3.2489
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000957545309.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:27:40
Heat of formation + Delta-G solvation = 43.946008 kcal
Electronic energy + Delta-G solvation = -31382.206056 eV
Core-core repulsion = 27317.557669 eV
Total energy + Delta-G solvation = -4064.648387 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.30 seconds
Orbital eigenvalues (eV)
-43.17734 -41.64323 -39.98000 -37.36734 -35.14201 -34.70904 -33.35599 -33.01970
-32.40301 -31.60947 -30.72185 -29.36260 -28.55464 -26.65887 -24.91519 -24.40255
-23.52637 -22.76136 -22.15564 -21.64843 -20.28286 -19.20171 -18.85075 -18.59555
-17.91797 -17.02174 -16.84704 -16.53761 -16.41083 -15.82052 -15.49041 -15.34664
-15.24914 -15.13612 -14.89672 -14.66382 -14.50097 -14.37610 -14.13522 -13.65237
-13.61376 -13.24535 -13.17546 -13.10556 -13.00956 -12.86482 -12.75011 -12.67164
-12.55421 -12.20698 -12.09975 -12.04168 -11.73382 -11.63476 -11.29118 -11.14503
-11.11008 -11.04840 -10.89231 -10.79437 -10.47643 -10.43428 -9.57618 -8.60712
-7.84195 -5.28464 0.56370 1.45554 1.47509 1.57905 1.58055 1.61664
1.74257 2.17877 2.52668 2.99862 3.29404 3.51094 3.59097 3.75247
3.84875 3.85664 3.88656 3.95519 4.18723 4.30937 4.34324 4.39489
4.41059 4.52700 4.60039 4.67580 4.71446 4.74850 4.75798 4.79746
4.83459 4.86976 4.94703 5.02808 5.05876 5.10826 5.14503 5.21575
5.24818 5.34143 5.34854 5.40667 5.48607 5.51234 5.61287 5.66628
5.70687 5.86456 6.20642 6.42228 6.42343 7.06387 7.13165 7.18578
7.92132 8.42965 9.21358
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.036246 B = 0.002021 C = 0.002019
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 772.323972 B =13853.447899 C =13867.429631
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.285 3.715
3 N -0.568 5.568
4 C 0.236 3.764
5 C -0.043 4.043
6 C 0.521 3.479
7 O -0.588 6.588
8 N -0.600 5.600
9 C 0.101 3.899
10 C -0.118 4.118
11 C -0.042 4.042
12 C -0.110 4.110
13 C 0.138 3.862
14 N -0.607 5.607
15 C -0.255 4.255
16 H 0.066 0.934
17 C -0.055 4.055
18 N -0.937 5.937
19 Si 0.964 3.036
20 H -0.265 1.265
21 H -0.291 1.291
22 H -0.295 1.295
23 C 0.178 3.822
24 C -0.117 4.117
25 C -0.114 4.114
26 C 0.122 3.878
27 N -0.340 5.340
28 N -0.476 5.476
29 H 0.454 0.546
30 H 0.115 0.885
31 H 0.096 0.904
32 H 0.109 0.891
33 H 0.150 0.850
34 H 0.143 0.857
35 H 0.091 0.909
36 H 0.119 0.881
37 H 0.066 0.934
38 H 0.094 0.906
39 H 0.081 0.919
40 H 0.062 0.938
41 H 0.047 0.953
42 H 0.011 0.989
43 H 0.247 0.753
44 H 0.045 0.955
45 H -0.006 1.006
46 H 0.055 0.945
47 H 0.057 0.943
48 H 0.052 0.948
49 H 0.056 0.944
50 H 0.065 0.935
51 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.329 -8.421 18.977 30.490
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.007 3.993
3 N -0.298 5.298
4 C -0.048 4.048
5 C -0.085 4.085
6 C 0.309 3.691
7 O -0.469 6.469
8 N -0.333 5.333
9 C -0.020 4.020
10 C -0.156 4.156
11 C -0.042 4.042
12 C -0.149 4.149
13 C 0.013 3.987
14 N -0.331 5.331
15 C -0.386 4.386
16 H 0.084 0.916
17 C -0.250 4.250
18 N -0.584 5.584
19 Si 0.793 3.207
20 H -0.189 1.189
21 H -0.218 1.218
22 H -0.223 1.223
23 C 0.052 3.948
24 C -0.156 4.156
25 C -0.152 4.152
26 C -0.001 4.001
27 N -0.170 5.170
28 N -0.196 5.196
29 H 0.303 0.697
30 H 0.133 0.867
31 H 0.115 0.885
32 H 0.128 0.872
33 H 0.168 0.832
34 H 0.160 0.840
35 H 0.109 0.891
36 H 0.137 0.863
37 H 0.085 0.915
38 H 0.112 0.888
39 H 0.100 0.900
40 H 0.080 0.920
41 H 0.065 0.935
42 H 0.029 0.971
43 H 0.056 0.944
44 H 0.063 0.937
45 H 0.012 0.988
46 H 0.074 0.926
47 H 0.076 0.924
48 H 0.071 0.929
49 H 0.075 0.925
50 H 0.083 0.917
51 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges -21.965 -8.743 18.413 29.965
hybrid contribution 1.075 -0.359 -1.203 1.653
sum -20.890 -9.102 17.209 28.555
Atomic orbital electron populations
1.20644 0.80072 1.06310 1.06265 1.25259 0.98328 0.82035 0.93656
1.70295 1.01621 1.31270 1.26650 1.23706 0.93490 0.90081 0.97488
1.20070 0.93925 0.99965 0.94536 1.20683 0.79444 0.77683 0.91320
1.90690 1.54639 1.53556 1.47996 1.48136 1.30812 1.46407 1.07922
1.22252 0.90594 0.99795 0.89335 1.22040 0.95768 1.01829 0.95968
1.20331 0.93681 0.95022 0.95164 1.21989 1.00910 0.94801 0.97194
1.21099 0.84991 0.97422 0.95159 1.44289 1.04817 1.05343 1.78664
1.19554 1.02144 0.91370 1.25513 0.91615 1.25774 1.03057 0.98938
0.97245 1.70207 1.30298 1.23861 1.33991 0.85248 0.79804 0.78784
0.76883 1.18931 1.21816 1.22266 1.20556 0.98352 0.83683 0.92181
1.22032 0.95983 0.99536 0.98077 1.21856 0.94138 0.99542 0.99680
1.21445 0.94622 1.00987 0.83053 1.77868 0.98864 1.12657 1.27590
1.47872 1.03285 1.11009 1.57437 0.69703 0.86677 0.88491 0.87234
0.83218 0.83965 0.89093 0.86286 0.91503 0.88791 0.90026 0.91969
0.93487 0.97072 0.94355 0.93662 0.98808 0.92639 0.92442 0.92948
0.92541 0.91650 0.90418
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.42 10.51 71.24 0.75 0.32 16
2 C 0.29 4.89 8.24 138.23 1.14 6.03 16
3 N -0.57 -13.82 11.19 -179.73 -2.01 -15.83 16
4 C 0.24 5.88 6.63 138.63 0.92 6.80 16
5 C -0.04 -0.82 4.67 29.10 0.14 -0.68 16
6 C 0.52 13.81 7.69 87.66 0.67 14.49 16
7 O -0.59 -21.62 15.45 -3.02 -0.05 -21.67 16
8 N -0.60 -13.96 2.97 -818.14 -2.43 -16.39 16
9 C 0.10 1.59 5.90 86.51 0.51 2.10 16
10 C -0.12 -2.33 4.92 30.82 0.15 -2.18 16
11 C -0.04 -1.20 0.51 -52.13 -0.03 -1.22 16
12 C -0.11 -3.27 4.15 30.67 0.13 -3.15 16
13 C 0.14 5.56 6.04 86.36 0.52 6.08 16
14 N -0.61 -30.20 2.99 -699.11 -2.09 -32.29 16
15 C -0.26 -14.09 9.59 84.03 0.81 -13.28 16
16 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16
17 C -0.06 -3.13 4.91 84.86 0.42 -2.71 16
18 N -0.94 -56.51 11.19 21.65 0.24 -56.27 16
19 Si 0.96 45.44 29.59 68.60 2.03 47.47 16
20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16
21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16
22 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16
23 C 0.18 8.56 4.84 86.36 0.42 8.98 16
24 C -0.12 -4.21 4.90 30.67 0.15 -4.06 16
25 C -0.11 -3.58 4.14 30.66 0.13 -3.45 16
26 C 0.12 3.44 5.96 86.35 0.51 3.96 16
27 N -0.34 -8.60 12.80 -51.34 -0.66 -9.26 16
28 N -0.48 -8.23 7.45 -50.71 -0.38 -8.61 16
29 H 0.45 4.13 8.96 -213.09 -1.91 2.22 16
30 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16
31 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16
32 H 0.11 0.06 8.14 -2.39 -0.02 0.04 16
33 H 0.15 1.90 7.93 -2.38 -0.02 1.88 16
34 H 0.14 1.90 7.71 -2.39 -0.02 1.88 16
35 H 0.09 1.26 6.66 -2.39 -0.02 1.24 16
36 H 0.12 1.02 5.94 -2.39 -0.01 1.01 16
37 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16
38 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
39 H 0.08 1.97 4.98 -2.39 -0.01 1.96 16
40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
41 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16
42 H 0.01 0.47 6.74 -2.39 -0.02 0.46 16
43 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16
44 H 0.04 2.52 6.03 -2.39 -0.01 2.50 16
45 H -0.01 -0.32 6.67 -2.39 -0.02 -0.33 16
46 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16
47 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16
48 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16
49 H 0.06 2.15 4.99 -2.39 -0.01 2.14 16
50 H 0.06 2.14 7.01 -2.39 -0.02 2.12 16
51 H 0.08 2.10 6.74 -2.39 -0.02 2.08 16
Total: -1.00 -83.91 386.29 1.04 -82.86
By element:
Atomic # 1 Polarization: 12.90 SS G_CDS: -0.95 Total: 11.95 kcal
Atomic # 6 Polarization: 10.70 SS G_CDS: 7.33 Total: 18.03 kcal
Atomic # 7 Polarization: -131.32 SS G_CDS: -7.32 Total: -138.65 kcal
Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.67 kcal
Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal
Total: -83.91 1.04 -82.86 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000957545309.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.809 kcal
(2) G-P(sol) polarization free energy of solvation -83.908 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.901 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.863 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.946 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds