Wall clock time and date at job start Wed Apr 1 2020 05:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36602 * 126.57668 * 2 1 4 4 C 1.47516 * 125.77157 * 0.02562 * 3 2 1 5 5 O 1.21601 * 120.00263 * 353.88956 * 4 3 2 6 6 N 1.34773 * 120.00208 * 173.89581 * 4 3 2 7 7 C 1.46932 * 120.63092 * 354.29985 * 6 4 3 8 8 C 1.53188 * 108.89579 * 126.45777 * 7 6 4 9 9 C 1.53045 * 109.31099 * 54.56676 * 8 7 6 10 10 C 1.53046 * 109.53721 * 298.63473 * 9 8 7 11 11 H 1.08996 * 109.49547 * 301.41119 * 10 9 8 12 12 C 1.52994 * 109.49485 * 181.34888 * 10 9 8 13 13 H 1.09004 * 110.64472 * 299.29645 * 12 10 9 14 14 C 1.55152 * 110.72200 * 62.44103 * 12 10 9 15 15 C 1.55122 * 101.48957 * 153.73234 * 14 12 10 16 16 N 1.47428 * 104.94128 * 323.22390 * 15 14 12 17 17 C 1.36936 * 125.64940 * 203.96372 * 16 15 14 18 18 H 1.07998 * 120.00384 * 180.02562 * 17 16 15 19 19 C 1.38816 * 119.99945 * 0.04290 * 17 16 15 20 20 N 1.31624 * 119.99796 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46992 * 90.00141 * 21 19 17 23 23 H 1.48505 * 109.47116 * 209.99979 * 21 19 17 24 24 H 1.48498 * 109.47443 * 329.99919 * 21 19 17 25 25 C 1.47018 * 108.70315 * 24.00228 * 16 15 14 26 26 C 1.46959 * 120.65795 * 174.11175 * 6 4 3 27 27 N 1.34397 * 108.45435 * 180.26362 * 3 2 1 28 28 N 1.28758 * 109.52404 * 359.59154 * 27 3 2 29 29 N 1.34810 * 126.58223 * 180.02562 * 2 1 3 30 30 C 1.46501 * 126.59550 * 359.94390 * 29 2 1 31 31 H 1.08992 * 109.47298 * 89.99617 * 1 2 3 32 32 H 1.09002 * 109.47274 * 210.00091 * 1 2 3 33 33 H 1.09000 * 109.47250 * 329.99229 * 1 2 3 34 34 H 1.08999 * 109.58194 * 6.60269 * 7 6 4 35 35 H 1.09001 * 109.58384 * 246.32188 * 7 6 4 36 36 H 1.08999 * 109.49821 * 174.51417 * 8 7 6 37 37 H 1.08994 * 109.50154 * 294.58491 * 8 7 6 38 38 H 1.08999 * 109.45828 * 58.65537 * 9 8 7 39 39 H 1.08994 * 109.45883 * 178.62911 * 9 8 7 40 40 H 1.08996 * 111.00611 * 271.93609 * 14 12 10 41 41 H 1.09002 * 111.00640 * 35.79155 * 14 12 10 42 42 H 1.08993 * 110.42485 * 204.29476 * 15 14 12 43 43 H 1.09000 * 110.30020 * 82.08863 * 15 14 12 44 44 H 0.96996 * 119.99733 * 180.02562 * 20 19 17 45 45 H 1.09007 * 109.88398 * 239.52569 * 25 16 15 46 46 H 1.08999 * 109.88625 * 118.35910 * 25 16 15 47 47 H 1.09010 * 109.46642 * 113.75381 * 26 6 4 48 48 H 1.09000 * 109.59353 * 353.39966 * 26 6 4 49 49 H 1.08996 * 109.47632 * 89.99460 * 30 29 2 50 50 H 1.08996 * 109.47203 * 210.00387 * 30 29 2 51 51 H 1.09008 * 109.46879 * 329.99679 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6915 2.7646 -0.1111 6 7 2.7753 3.4968 0.1246 7 6 4.1899 3.1963 0.3847 8 6 5.0484 3.8970 -0.6729 9 6 4.7156 5.3907 -0.6866 10 6 3.2427 5.5835 -1.0549 11 1 3.0508 5.1394 -2.0316 12 6 2.9193 7.0782 -1.1012 13 1 3.0921 7.5391 -0.1286 14 6 3.7542 7.7867 -2.2004 15 6 2.8471 8.9968 -2.5456 16 7 1.4702 8.4778 -2.4546 17 6 0.3769 8.9992 -3.0934 18 1 -0.5937 8.5445 -2.9610 19 6 0.5162 10.1121 -3.9113 20 7 1.6991 10.6664 -4.0725 21 14 -0.9750 10.8229 -4.7832 22 1 -1.6125 11.8475 -3.9178 23 1 -0.5495 11.4492 -6.0608 24 1 -1.9483 9.7372 -5.0643 25 6 1.4651 7.3082 -1.5637 26 6 2.3636 4.9018 -0.0017 27 7 3.5983 0.6790 -0.0059 28 7 3.6299 -0.6082 -0.0009 29 7 2.3105 -1.0825 -0.0005 30 6 1.8865 -2.4848 0.0000 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 4.3505 2.1196 0.3310 35 1 4.4638 3.5576 1.3759 36 1 6.1031 3.7615 -0.4334 37 1 4.8400 3.4684 -1.6531 38 1 4.9013 5.8132 0.3009 39 1 5.3425 5.8957 -1.4214 40 1 4.7167 8.1156 -1.8088 41 1 3.8874 7.1400 -3.0676 42 1 3.0531 9.3507 -3.5556 43 1 2.9980 9.8003 -1.8247 44 1 1.7964 11.4442 -4.6437 45 1 1.1050 6.4324 -2.1037 46 1 0.8279 7.5022 -0.7009 47 1 2.4870 5.4042 0.9579 48 1 1.3194 4.9505 -0.3103 49 1 1.7804 -2.8328 -1.0274 50 1 2.6336 -3.0901 0.5134 51 1 0.9298 -2.5750 0.5147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961131577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:14 Heat of formation + Delta-G solvation = 94.358061 kcal Electronic energy + Delta-G solvation = -31369.109533 eV Core-core repulsion = 27306.647177 eV Total energy + Delta-G solvation = -4062.462356 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.64389 -39.99745 -38.16141 -36.60741 -35.35585 -33.52479 -32.66267 -32.12761 -31.00848 -29.18730 -28.47006 -27.90520 -26.90683 -25.58432 -24.51486 -23.18137 -22.64169 -21.60499 -20.73231 -19.89906 -19.39783 -19.26707 -17.64566 -16.79127 -16.76261 -16.24793 -16.01108 -15.33044 -14.84153 -14.71629 -14.53328 -14.20653 -14.12575 -13.92755 -13.71517 -13.69384 -13.42452 -13.41242 -13.01043 -12.95343 -12.73767 -12.47301 -12.26667 -12.02344 -11.81000 -11.49316 -11.37060 -11.03433 -10.90086 -10.84509 -10.71688 -10.62921 -10.54743 -10.30144 -10.06532 -10.01318 -9.79529 -9.66660 -9.58959 -9.44516 -9.34439 -8.55817 -8.50800 -6.71755 -5.55940 -2.96672 0.79276 1.43448 1.64701 2.94005 3.16029 3.45973 3.50608 3.52895 3.84583 3.93423 4.20397 4.36782 4.45335 4.56947 4.70708 4.80881 4.89464 5.03252 5.07985 5.09853 5.12111 5.20810 5.30837 5.37905 5.53984 5.55863 5.60365 5.63265 5.81288 5.82310 5.84423 5.94496 6.00219 6.03681 6.12155 6.15827 6.21158 6.25396 6.42631 6.48047 6.56395 6.65807 6.74312 6.76845 6.90537 7.12106 7.36524 7.63146 7.64774 7.73535 7.96146 8.11621 8.46950 9.32524 9.93731 10.59709 11.48008 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.002418 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.629787 B =11574.664883 C =12811.351684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.124 3.876 3 C -0.097 4.097 4 C 0.601 3.399 5 O -0.536 6.536 6 N -0.592 5.592 7 C 0.069 3.931 8 C -0.129 4.129 9 C -0.115 4.115 10 C -0.086 4.086 11 H 0.074 0.926 12 C -0.092 4.092 13 H 0.070 0.930 14 C -0.136 4.136 15 C 0.151 3.849 16 N -0.605 5.605 17 C -0.217 4.217 18 H 0.077 0.923 19 C -0.015 4.015 20 N -0.924 5.924 21 Si 0.913 3.087 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.140 3.860 26 C 0.116 3.884 27 N -0.202 5.202 28 N -0.071 5.071 29 N -0.363 5.363 30 C 0.087 3.913 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.138 0.862 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.104 0.896 43 H 0.009 0.991 44 H 0.250 0.750 45 H 0.023 0.977 46 H 0.019 0.981 47 H 0.068 0.932 48 H 0.096 0.904 49 H 0.090 0.910 50 H 0.101 0.899 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.375 -26.899 11.287 29.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.014 4.014 3 C -0.236 4.236 4 C 0.387 3.613 5 O -0.413 6.413 6 N -0.323 5.323 7 C -0.055 4.055 8 C -0.167 4.167 9 C -0.153 4.153 10 C -0.105 4.105 11 H 0.092 0.908 12 C -0.111 4.111 13 H 0.088 0.912 14 C -0.174 4.174 15 C 0.027 3.973 16 N -0.331 5.331 17 C -0.346 4.346 18 H 0.094 0.906 19 C -0.210 4.210 20 N -0.573 5.573 21 Si 0.744 3.256 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.014 3.986 26 C -0.005 4.005 27 N -0.074 5.074 28 N -0.050 5.050 29 N -0.150 5.150 30 C -0.054 4.054 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.154 0.846 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.122 0.878 43 H 0.027 0.973 44 H 0.061 0.939 45 H 0.041 0.959 46 H 0.037 0.963 47 H 0.086 0.914 48 H 0.115 0.885 49 H 0.109 0.891 50 H 0.120 0.880 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.152 -27.057 11.084 29.690 hybrid contribution -1.565 0.527 -0.391 1.697 sum 3.586 -26.530 10.693 28.828 Atomic orbital electron populations 1.20719 0.84468 1.05253 1.04917 1.21930 0.96326 0.86190 0.96929 1.21249 0.88786 0.95529 1.18078 1.16762 0.85328 0.82393 0.76787 1.90785 1.15955 1.83202 1.51346 1.47897 1.08815 1.06212 1.69407 1.22779 0.79165 1.05563 0.97962 1.21844 0.99300 0.95969 0.99572 1.21609 0.96268 0.95528 1.01882 1.21500 0.94504 0.95663 0.98883 0.90784 1.22137 0.97071 0.92740 0.99167 0.91177 1.23049 0.97768 0.99590 0.97028 1.21948 0.81983 0.90585 1.02824 1.44517 1.05241 1.30688 1.52657 1.19104 0.87204 1.08247 1.20044 0.90563 1.24781 0.97063 0.98398 1.00719 1.69815 1.20703 1.24110 1.42686 0.86081 0.81676 0.78904 0.78931 1.21719 1.21736 1.20734 1.21348 0.93306 0.90960 0.92980 1.21827 1.00733 0.78796 0.99168 1.74081 1.18697 1.03547 1.11042 1.82006 0.96195 1.03849 1.22913 1.50231 1.06389 1.07796 1.50539 1.22187 1.02462 0.75962 1.04830 0.88722 0.90697 0.87015 0.84568 0.92095 0.90991 0.91735 0.92006 0.91262 0.92557 0.92334 0.87810 0.97272 0.93883 0.95887 0.96325 0.91408 0.88533 0.89146 0.88023 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.65 9.51 36.01 0.34 -0.30 16 2 C 0.12 1.18 7.02 -81.87 -0.57 0.61 16 3 C -0.10 -1.21 6.75 -83.55 -0.56 -1.78 16 4 C 0.60 8.70 7.68 -12.48 -0.10 8.60 16 5 O -0.54 -8.79 14.24 5.28 0.08 -8.71 16 6 N -0.59 -8.13 2.98 -173.97 -0.52 -8.65 16 7 C 0.07 0.80 6.32 -3.71 -0.02 0.78 16 8 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 9 C -0.12 -1.44 4.99 -26.68 -0.13 -1.57 16 10 C -0.09 -1.28 1.72 -90.50 -0.16 -1.44 16 11 H 0.07 1.24 8.12 -51.93 -0.42 0.82 16 12 C -0.09 -1.63 2.49 -88.79 -0.22 -1.85 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 14 C -0.14 -2.63 5.51 -24.47 -0.13 -2.77 16 15 C 0.15 3.81 5.89 -2.41 -0.01 3.80 16 16 N -0.61 -16.23 3.40 -169.93 -0.58 -16.81 16 17 C -0.22 -6.32 10.27 -15.06 -0.15 -6.48 16 18 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 19 C -0.01 -0.43 5.49 -17.43 -0.10 -0.52 16 20 N -0.92 -27.77 10.09 55.49 0.56 -27.21 16 21 Si 0.91 22.80 29.55 -169.99 -5.02 17.77 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 25 C 0.14 3.08 6.02 -3.06 -0.02 3.06 16 26 C 0.12 1.69 5.42 -3.70 -0.02 1.67 16 27 N -0.20 -2.49 8.69 32.85 0.29 -2.21 16 28 N -0.07 -0.79 13.78 60.35 0.83 0.04 16 29 N -0.36 -2.97 4.03 -63.59 -0.26 -3.23 16 30 C 0.09 0.24 11.33 59.85 0.68 0.92 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.26 7.18 -51.93 -0.37 -0.12 16 33 H 0.11 0.98 6.57 -51.93 -0.34 0.64 16 34 H 0.14 1.63 3.64 -123.67 -0.45 1.17 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.88 7.27 -51.93 -0.38 0.50 16 40 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.06 1.14 8.05 -51.93 -0.42 0.72 16 42 H 0.10 2.93 5.87 -51.93 -0.31 2.63 16 43 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.02 0.52 7.68 -51.92 -0.40 0.12 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 48 H 0.10 1.59 6.43 -51.93 -0.33 1.26 16 49 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 50 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 51 H 0.10 0.04 7.16 -51.92 -0.37 -0.33 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -35.12 392.34 -8.46 -43.58 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -8.41 Total: -1.61 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.35 Total: 1.11 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.33 Total: -58.06 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.12 -8.46 -43.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961131577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.939 kcal (2) G-P(sol) polarization free energy of solvation -35.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds