Wall clock time and date at job start Wed Apr 1 2020 05:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36602 * 126.57668 * 2 1 4 4 C 1.47516 * 125.77157 * 0.02562 * 3 2 1 5 5 O 1.21601 * 120.00263 * 353.88956 * 4 3 2 6 6 N 1.34773 * 120.00208 * 173.89581 * 4 3 2 7 7 C 1.46932 * 120.63092 * 354.29985 * 6 4 3 8 8 C 1.53188 * 108.89579 * 126.45777 * 7 6 4 9 9 C 1.53045 * 109.31099 * 54.56676 * 8 7 6 10 10 C 1.53046 * 109.53721 * 298.63473 * 9 8 7 11 11 H 1.08996 * 109.49547 * 301.41119 * 10 9 8 12 12 C 1.52994 * 109.49485 * 181.34888 * 10 9 8 13 13 H 1.09004 * 110.64472 * 299.29645 * 12 10 9 14 14 C 1.55152 * 110.72200 * 62.44103 * 12 10 9 15 15 C 1.55122 * 101.48957 * 153.73234 * 14 12 10 16 16 N 1.47428 * 104.94128 * 323.22390 * 15 14 12 17 17 C 1.36936 * 125.64940 * 203.96372 * 16 15 14 18 18 H 1.07998 * 120.00384 * 180.02562 * 17 16 15 19 19 C 1.38816 * 119.99945 * 0.04290 * 17 16 15 20 20 N 1.31624 * 119.99796 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46992 * 90.00141 * 21 19 17 23 23 H 1.48505 * 109.47116 * 209.99979 * 21 19 17 24 24 H 1.48498 * 109.47443 * 329.99919 * 21 19 17 25 25 C 1.47018 * 108.70315 * 24.00228 * 16 15 14 26 26 C 1.46959 * 120.65795 * 174.11175 * 6 4 3 27 27 N 1.34397 * 108.45435 * 180.26362 * 3 2 1 28 28 N 1.28758 * 109.52404 * 359.59154 * 27 3 2 29 29 N 1.34810 * 126.58223 * 180.02562 * 2 1 3 30 30 C 1.46501 * 126.59550 * 359.94390 * 29 2 1 31 31 H 1.08992 * 109.47298 * 89.99617 * 1 2 3 32 32 H 1.09002 * 109.47274 * 210.00091 * 1 2 3 33 33 H 1.09000 * 109.47250 * 329.99229 * 1 2 3 34 34 H 1.08999 * 109.58194 * 6.60269 * 7 6 4 35 35 H 1.09001 * 109.58384 * 246.32188 * 7 6 4 36 36 H 1.08999 * 109.49821 * 174.51417 * 8 7 6 37 37 H 1.08994 * 109.50154 * 294.58491 * 8 7 6 38 38 H 1.08999 * 109.45828 * 58.65537 * 9 8 7 39 39 H 1.08994 * 109.45883 * 178.62911 * 9 8 7 40 40 H 1.08996 * 111.00611 * 271.93609 * 14 12 10 41 41 H 1.09002 * 111.00640 * 35.79155 * 14 12 10 42 42 H 1.08993 * 110.42485 * 204.29476 * 15 14 12 43 43 H 1.09000 * 110.30020 * 82.08863 * 15 14 12 44 44 H 0.96996 * 119.99733 * 180.02562 * 20 19 17 45 45 H 1.09007 * 109.88398 * 239.52569 * 25 16 15 46 46 H 1.08999 * 109.88625 * 118.35910 * 25 16 15 47 47 H 1.09010 * 109.46642 * 113.75381 * 26 6 4 48 48 H 1.09000 * 109.59353 * 353.39966 * 26 6 4 49 49 H 1.08996 * 109.47632 * 89.99460 * 30 29 2 50 50 H 1.08996 * 109.47203 * 210.00387 * 30 29 2 51 51 H 1.09008 * 109.46879 * 329.99679 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3210 1.0970 0.0000 4 6 1.8737 2.5027 0.0005 5 8 0.6915 2.7646 -0.1111 6 7 2.7753 3.4968 0.1246 7 6 4.1899 3.1963 0.3847 8 6 5.0484 3.8970 -0.6729 9 6 4.7156 5.3907 -0.6866 10 6 3.2427 5.5835 -1.0549 11 1 3.0508 5.1394 -2.0316 12 6 2.9193 7.0782 -1.1012 13 1 3.0921 7.5391 -0.1286 14 6 3.7542 7.7867 -2.2004 15 6 2.8471 8.9968 -2.5456 16 7 1.4702 8.4778 -2.4546 17 6 0.3769 8.9992 -3.0934 18 1 -0.5937 8.5445 -2.9610 19 6 0.5162 10.1121 -3.9113 20 7 1.6991 10.6664 -4.0725 21 14 -0.9750 10.8229 -4.7832 22 1 -1.6125 11.8475 -3.9178 23 1 -0.5495 11.4492 -6.0608 24 1 -1.9483 9.7372 -5.0643 25 6 1.4651 7.3082 -1.5637 26 6 2.3636 4.9018 -0.0017 27 7 3.5983 0.6790 -0.0059 28 7 3.6299 -0.6082 -0.0009 29 7 2.3105 -1.0825 -0.0005 30 6 1.8865 -2.4848 0.0000 31 1 -0.3633 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8899 0.5139 34 1 4.3505 2.1196 0.3310 35 1 4.4638 3.5576 1.3759 36 1 6.1031 3.7615 -0.4334 37 1 4.8400 3.4684 -1.6531 38 1 4.9013 5.8132 0.3009 39 1 5.3425 5.8957 -1.4214 40 1 4.7167 8.1156 -1.8088 41 1 3.8874 7.1400 -3.0676 42 1 3.0531 9.3507 -3.5556 43 1 2.9980 9.8003 -1.8247 44 1 1.7964 11.4442 -4.6437 45 1 1.1050 6.4324 -2.1037 46 1 0.8279 7.5022 -0.7009 47 1 2.4870 5.4042 0.9579 48 1 1.3194 4.9505 -0.3103 49 1 1.7804 -2.8328 -1.0274 50 1 2.6336 -3.0901 0.5134 51 1 0.9298 -2.5750 0.5147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961131577.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:12 Heat of formation + Delta-G solvation = 71.655814 kcal Electronic energy + Delta-G solvation = -31370.093977 eV Core-core repulsion = 27306.647177 eV Total energy + Delta-G solvation = -4063.446800 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.40992 -41.10619 -39.58973 -38.00480 -36.07286 -35.10292 -33.61194 -33.33945 -32.40738 -30.90593 -29.40354 -28.54079 -28.33060 -26.76587 -26.27500 -24.12938 -23.90193 -22.43709 -21.85102 -21.65589 -20.76662 -20.37131 -18.90733 -18.46955 -17.49752 -17.20202 -16.97694 -16.79444 -16.40431 -15.99527 -15.68874 -15.52308 -15.26565 -15.01716 -14.59154 -14.51099 -14.35959 -14.20495 -14.05233 -14.01579 -13.81197 -13.69667 -13.40504 -13.29122 -13.21020 -13.03835 -12.76752 -12.73709 -12.42251 -12.25603 -12.11984 -12.00694 -11.80352 -11.74215 -11.49554 -11.39095 -11.26953 -11.14951 -11.07718 -10.75875 -10.66058 -10.27663 -9.57460 -8.87408 -7.77193 -5.21461 0.07977 0.51999 1.09397 1.44573 1.47176 1.56060 1.93671 2.15368 2.49432 3.07389 3.31159 3.34844 3.59311 3.62337 3.69011 3.72993 3.82910 4.01538 4.11659 4.15728 4.26643 4.30829 4.34959 4.38557 4.46245 4.52749 4.61097 4.61674 4.65956 4.71266 4.73326 4.80898 4.82028 4.89523 4.93035 5.01994 5.04077 5.10510 5.16438 5.20766 5.27965 5.39235 5.43448 5.45977 5.47378 5.56277 5.69130 5.69740 5.84055 6.32624 6.33378 6.80833 7.08414 7.12012 7.79712 8.44051 9.24587 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016548 B = 0.002418 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.629787 B =11574.664883 C =12811.351684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.131 3.869 3 C -0.128 4.128 4 C 0.595 3.405 5 O -0.567 6.567 6 N -0.595 5.595 7 C 0.067 3.933 8 C -0.122 4.122 9 C -0.110 4.110 10 C -0.074 4.074 11 H 0.052 0.948 12 C -0.074 4.074 13 H 0.086 0.914 14 C -0.118 4.118 15 C 0.151 3.849 16 N -0.629 5.629 17 C -0.241 4.241 18 H 0.075 0.925 19 C -0.069 4.069 20 N -0.949 5.949 21 Si 0.981 3.019 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.272 1.272 25 C 0.137 3.863 26 C 0.121 3.879 27 N -0.215 5.215 28 N -0.089 5.089 29 N -0.350 5.350 30 C 0.072 3.928 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.139 0.861 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.070 0.930 43 H -0.013 1.013 44 H 0.247 0.753 45 H 0.014 0.986 46 H 0.017 0.983 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.107 0.893 50 H 0.114 0.886 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.789 -29.306 12.375 32.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.008 4.008 3 C -0.267 4.267 4 C 0.382 3.618 5 O -0.446 6.446 6 N -0.325 5.325 7 C -0.055 4.055 8 C -0.160 4.160 9 C -0.148 4.148 10 C -0.093 4.093 11 H 0.070 0.930 12 C -0.094 4.094 13 H 0.105 0.895 14 C -0.156 4.156 15 C 0.026 3.974 16 N -0.355 5.355 17 C -0.370 4.370 18 H 0.093 0.907 19 C -0.261 4.261 20 N -0.598 5.598 21 Si 0.809 3.191 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.197 1.197 25 C 0.012 3.988 26 C -0.002 4.002 27 N -0.087 5.087 28 N -0.068 5.068 29 N -0.136 5.136 30 C -0.067 4.067 31 H 0.119 0.881 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.155 0.845 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.005 0.995 44 H 0.057 0.943 45 H 0.032 0.968 46 H 0.035 0.965 47 H 0.101 0.899 48 H 0.088 0.912 49 H 0.125 0.875 50 H 0.132 0.868 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.596 -29.520 12.191 32.425 hybrid contribution -1.753 1.162 -0.720 2.223 sum 3.844 -28.358 11.471 30.831 Atomic orbital electron populations 1.20793 0.82559 1.06176 1.05501 1.22266 0.97351 0.85833 0.95332 1.21156 0.89711 0.95182 1.20655 1.17107 0.85056 0.83420 0.76197 1.90757 1.17130 1.83878 1.52815 1.47983 1.09737 1.05633 1.69148 1.22928 0.77865 1.05920 0.98829 1.21806 1.00685 0.94785 0.98733 1.21586 0.93772 0.96588 1.02808 1.21333 0.96753 0.93183 0.98078 0.92966 1.22035 0.93530 0.94777 0.99040 0.89533 1.22877 0.98132 0.96974 0.97631 1.21784 0.82796 0.92489 1.00301 1.44857 1.05396 1.31835 1.53368 1.19452 0.88110 1.08777 1.20642 0.90683 1.25656 1.00040 0.98857 1.01567 1.70071 1.22496 1.24193 1.43087 0.85033 0.78400 0.78154 0.77484 1.21187 1.21632 1.19659 1.21500 0.96417 0.88935 0.91991 1.21663 0.99165 0.79809 0.99540 1.74010 1.18839 1.04192 1.11640 1.81898 0.97975 1.03446 1.23480 1.50553 1.05129 1.09296 1.48593 1.22744 1.04277 0.73070 1.06611 0.88141 0.86629 0.89179 0.84488 0.90567 0.88400 0.93170 0.90297 0.90961 0.89305 0.92533 0.91218 0.99453 0.94305 0.96822 0.96455 0.89932 0.91160 0.87477 0.86767 0.85444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 9.51 71.24 0.68 -0.42 16 2 C 0.13 2.34 7.02 41.72 0.29 2.63 16 3 C -0.13 -3.15 6.75 40.82 0.28 -2.87 16 4 C 0.59 17.49 7.68 86.69 0.67 18.16 16 5 O -0.57 -19.27 14.24 -4.03 -0.06 -19.33 16 6 N -0.59 -16.16 2.98 -822.58 -2.45 -18.62 16 7 C 0.07 1.47 6.32 86.36 0.55 2.01 16 8 C -0.12 -2.50 6.08 30.67 0.19 -2.31 16 9 C -0.11 -2.47 4.99 30.62 0.15 -2.32 16 10 C -0.07 -2.15 1.72 -10.72 -0.02 -2.17 16 11 H 0.05 1.76 8.12 -2.39 -0.02 1.74 16 12 C -0.07 -2.59 2.49 -9.61 -0.02 -2.62 16 13 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 14 C -0.12 -4.49 5.51 32.06 0.18 -4.32 16 15 C 0.15 7.83 5.89 86.93 0.51 8.34 16 16 N -0.63 -34.75 3.40 -691.55 -2.35 -37.10 16 17 C -0.24 -14.40 10.27 84.03 0.86 -13.54 16 18 H 0.08 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 20 N -0.95 -58.70 10.09 21.65 0.22 -58.48 16 21 Si 0.98 47.69 29.55 68.60 2.03 49.72 16 22 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 24 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 25 C 0.14 6.15 6.02 86.73 0.52 6.67 16 26 C 0.12 3.48 5.42 86.35 0.47 3.95 16 27 N -0.21 -5.18 8.69 -50.00 -0.43 -5.62 16 28 N -0.09 -1.88 13.78 37.02 0.51 -1.37 16 29 N -0.35 -4.98 4.03 -355.09 -1.43 -6.41 16 30 C 0.07 0.15 11.33 127.77 1.45 1.60 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.12 0.38 7.18 -2.39 -0.02 0.36 16 33 H 0.09 1.55 6.57 -2.39 -0.02 1.54 16 34 H 0.14 3.13 3.64 -95.22 -0.35 2.78 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 1.62 7.27 -2.39 -0.02 1.60 16 40 H 0.09 2.84 8.08 -2.39 -0.02 2.82 16 41 H 0.06 2.18 8.05 -2.39 -0.02 2.16 16 42 H 0.07 4.10 5.87 -2.39 -0.01 4.08 16 43 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 45 H 0.01 0.64 7.68 -2.38 -0.02 0.62 16 46 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 48 H 0.07 2.41 6.43 -2.39 -0.02 2.39 16 49 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 50 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 51 H 0.13 -0.46 7.16 -2.38 -0.02 -0.47 16 Total: -1.00 -80.33 392.34 3.84 -76.50 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: 0.59 Total: 11.54 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 7.21 Total: 9.17 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -5.94 Total: -127.60 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.06 Total: -19.33 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Total: -80.33 3.84 -76.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961131577.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.154 kcal (2) G-P(sol) polarization free energy of solvation -80.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds