Wall clock time and date at job start Wed Apr 1 2020 05:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.36599 * 126.58108 * 2 1 4 4 C 1.47527 * 125.76898 * 359.95052 * 3 2 1 5 5 O 1.21595 * 119.99615 * 353.88011 * 4 3 2 6 6 N 1.34769 * 119.99967 * 173.87807 * 4 3 2 7 7 C 1.46928 * 120.62944 * 354.19182 * 6 4 3 8 8 C 1.53198 * 108.77403 * 126.41710 * 7 6 4 9 9 C 1.53046 * 109.30983 * 54.63604 * 8 7 6 10 10 C 1.53046 * 109.53641 * 298.63391 * 9 8 7 11 11 H 1.08994 * 109.49738 * 301.38243 * 10 9 8 12 12 C 1.52999 * 109.49281 * 181.31905 * 10 9 8 13 13 H 1.09006 * 110.78255 * 298.21446 * 12 10 9 14 14 C 1.55156 * 110.71803 * 174.98103 * 12 10 9 15 15 C 1.54913 * 101.58312 * 206.13608 * 14 12 10 16 16 N 1.47747 * 104.84120 * 37.08889 * 15 14 12 17 17 C 1.36932 * 125.82164 * 155.83513 * 16 15 14 18 18 H 1.08004 * 120.00041 * 179.91028 * 17 16 15 19 19 C 1.38814 * 120.00184 * 359.90527 * 17 16 15 20 20 N 1.31627 * 119.99653 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00221 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47286 * 90.00145 * 21 19 17 23 23 H 1.48500 * 109.47153 * 210.00019 * 21 19 17 24 24 H 1.48503 * 109.47266 * 329.99770 * 21 19 17 25 25 C 1.47018 * 108.52888 * 335.75271 * 16 15 14 26 26 C 1.46924 * 120.63291 * 174.22197 * 6 4 3 27 27 N 1.34396 * 108.45867 * 180.22453 * 3 2 1 28 28 N 1.28763 * 109.52518 * 359.58060 * 27 3 2 29 29 N 1.34815 * 126.58076 * 179.97438 * 2 1 3 30 30 C 1.46497 * 126.59487 * 0.06578 * 29 2 1 31 31 H 1.09000 * 109.47410 * 90.00659 * 1 2 3 32 32 H 1.09006 * 109.47032 * 210.00422 * 1 2 3 33 33 H 1.08997 * 109.47642 * 329.99909 * 1 2 3 34 34 H 1.08993 * 109.58714 * 6.63234 * 7 6 4 35 35 H 1.08999 * 109.70694 * 246.26985 * 7 6 4 36 36 H 1.09001 * 109.49871 * 294.68905 * 8 7 6 37 37 H 1.08993 * 109.50147 * 174.58448 * 8 7 6 38 38 H 1.08999 * 109.45920 * 178.61870 * 9 8 7 39 39 H 1.08997 * 109.45150 * 58.64900 * 9 8 7 40 40 H 1.09004 * 111.00624 * 324.20597 * 14 12 10 41 41 H 1.08993 * 111.00871 * 88.05990 * 14 12 10 42 42 H 1.08992 * 110.37085 * 155.84874 * 15 14 12 43 43 H 1.09005 * 110.36230 * 278.05754 * 15 14 12 44 44 H 0.96995 * 119.99492 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.88569 * 241.68446 * 25 16 15 46 46 H 1.09003 * 109.87991 * 120.67247 * 25 16 15 47 47 H 1.09003 * 109.58891 * 113.79643 * 26 6 4 48 48 H 1.08997 * 109.58422 * 353.37152 * 26 6 4 49 49 H 1.09002 * 109.47509 * 89.99212 * 30 29 2 50 50 H 1.09004 * 109.46842 * 209.99711 * 30 29 2 51 51 H 1.09004 * 109.46886 * 329.99241 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8737 2.5027 -0.0010 5 8 0.6917 2.7645 -0.1143 6 7 2.7752 3.4968 0.1235 7 6 4.1889 3.1965 0.3881 8 6 5.0479 3.8953 -0.6706 9 6 4.7150 5.3890 -0.6870 10 6 3.2422 5.5811 -1.0562 11 1 3.0507 5.1357 -2.0324 12 6 2.9187 7.0757 -1.1045 13 1 3.0720 7.5364 -0.1286 14 6 1.4662 7.3072 -1.5987 15 6 1.5684 8.7267 -2.2107 16 7 2.9022 8.7702 -2.8448 17 6 3.2730 9.5918 -3.8756 18 1 4.2782 9.5458 -4.2680 19 6 2.3570 10.4838 -4.4162 20 7 1.1322 10.5402 -3.9377 21 14 2.8627 11.6041 -5.8229 22 1 2.5920 10.9272 -7.1167 23 1 2.0856 12.8676 -5.7532 24 1 4.3124 11.9081 -5.7170 25 6 3.7672 7.7836 -2.1817 26 6 2.3628 4.9014 -0.0019 27 7 3.5983 0.6789 -0.0050 28 7 3.6298 -0.6083 0.0008 29 7 2.3104 -1.0826 0.0005 30 6 1.8863 -2.4849 -0.0002 31 1 -0.3634 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 4.3496 2.1197 0.3364 35 1 4.4627 3.5597 1.3787 36 1 4.8392 3.4653 -1.6502 37 1 6.1024 3.7603 -0.4305 38 1 5.3423 5.8928 -1.4224 39 1 4.9002 5.8131 0.2998 40 1 1.1898 6.5741 -2.3565 41 1 0.7629 7.2904 -0.7662 42 1 0.7893 8.8744 -2.9584 43 1 1.4917 9.4830 -1.4294 44 1 0.4923 11.1637 -4.3152 45 1 4.6139 8.2871 -1.7150 46 1 4.1246 7.0553 -2.9098 47 1 2.4860 5.4054 0.9567 48 1 1.3187 4.9494 -0.3109 49 1 1.7820 -2.8324 -1.0281 50 1 2.6327 -3.0903 0.5141 51 1 0.9288 -2.5751 0.5128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961131581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:23 Heat of formation + Delta-G solvation = 94.328910 kcal Electronic energy + Delta-G solvation = -31304.156996 eV Core-core repulsion = 27241.693375 eV Total energy + Delta-G solvation = -4062.463620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.65580 -40.01553 -38.17210 -36.60814 -35.36540 -33.50817 -32.67498 -32.17840 -31.01436 -29.01601 -28.61029 -27.91412 -26.99535 -25.54613 -24.49302 -23.14566 -22.69000 -21.61878 -20.76179 -19.89126 -19.40893 -19.24330 -17.64533 -16.80329 -16.74642 -16.26456 -16.09047 -15.35456 -14.87882 -14.72920 -14.54059 -14.20788 -14.05335 -13.89528 -13.74868 -13.70599 -13.49196 -13.43532 -13.04683 -12.92367 -12.76479 -12.34530 -12.28874 -11.99516 -11.80454 -11.48679 -11.42285 -11.11346 -10.92181 -10.83501 -10.76283 -10.64377 -10.47161 -10.33761 -10.04530 -10.03065 -9.82643 -9.67817 -9.57977 -9.45854 -9.29898 -8.57413 -8.52661 -6.72599 -5.56722 -2.97573 0.77946 1.42005 1.63604 2.92206 3.13748 3.45011 3.49559 3.51779 3.83217 3.92266 4.18809 4.35136 4.44303 4.56264 4.69552 4.80596 4.88957 5.04290 5.07828 5.08384 5.11505 5.20708 5.29187 5.38540 5.52102 5.55339 5.59709 5.63992 5.73628 5.83469 5.86566 5.92944 6.01825 6.06009 6.13815 6.15546 6.20515 6.26175 6.43584 6.48807 6.56755 6.64873 6.74884 6.77258 6.90445 7.11347 7.34568 7.63046 7.63477 7.71933 7.96090 8.09157 8.46101 9.30917 9.92535 10.59157 11.47409 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020805 B = 0.002209 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.521988 B =12671.728902 C =13144.959143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.123 3.877 3 C -0.098 4.098 4 C 0.602 3.398 5 O -0.538 6.538 6 N -0.592 5.592 7 C 0.069 3.931 8 C -0.129 4.129 9 C -0.118 4.118 10 C -0.086 4.086 11 H 0.074 0.926 12 C -0.092 4.092 13 H 0.070 0.930 14 C -0.140 4.140 15 C 0.152 3.848 16 N -0.606 5.606 17 C -0.219 4.219 18 H 0.076 0.924 19 C -0.014 4.014 20 N -0.923 5.923 21 Si 0.913 3.087 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.145 3.855 26 C 0.119 3.881 27 N -0.201 5.201 28 N -0.071 5.071 29 N -0.363 5.363 30 C 0.087 3.913 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.111 0.889 34 H 0.138 0.862 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.104 0.896 43 H 0.010 0.990 44 H 0.251 0.749 45 H 0.017 0.983 46 H 0.022 0.978 47 H 0.067 0.933 48 H 0.095 0.905 49 H 0.090 0.910 50 H 0.101 0.899 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.814 -27.582 12.338 30.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.014 4.014 3 C -0.237 4.237 4 C 0.388 3.612 5 O -0.415 6.415 6 N -0.323 5.323 7 C -0.055 4.055 8 C -0.167 4.167 9 C -0.155 4.155 10 C -0.105 4.105 11 H 0.092 0.908 12 C -0.111 4.111 13 H 0.089 0.911 14 C -0.179 4.179 15 C 0.027 3.973 16 N -0.332 5.332 17 C -0.347 4.347 18 H 0.094 0.906 19 C -0.209 4.209 20 N -0.572 5.572 21 Si 0.744 3.256 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.019 3.981 26 C -0.003 4.003 27 N -0.073 5.073 28 N -0.049 5.049 29 N -0.149 5.149 30 C -0.055 4.055 31 H 0.113 0.887 32 H 0.093 0.907 33 H 0.130 0.870 34 H 0.154 0.846 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.121 0.879 43 H 0.028 0.972 44 H 0.062 0.938 45 H 0.035 0.965 46 H 0.039 0.961 47 H 0.086 0.914 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.120 0.880 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.588 -27.728 12.145 30.313 hybrid contribution -0.472 0.739 -0.705 1.126 sum 1.115 -26.989 11.440 29.335 Atomic orbital electron populations 1.20714 0.84483 1.05237 1.04894 1.21924 0.96316 0.86195 0.96966 1.21246 0.88800 0.95524 1.18114 1.16756 0.85298 0.82399 0.76747 1.90773 1.15967 1.83240 1.51500 1.47884 1.08911 1.06204 1.69282 1.22786 0.79118 1.05563 0.97986 1.21848 0.99322 0.95982 0.99527 1.21645 0.96363 0.95549 1.01991 1.21494 0.94531 0.95656 0.98847 0.90779 1.22125 0.97310 0.92662 0.99019 0.91150 1.23062 0.94398 1.01005 0.99402 1.21949 0.89873 0.89353 0.96141 1.44597 1.08461 1.42108 1.38014 1.19076 0.96471 1.12026 1.07143 0.90614 1.24788 0.96076 0.99983 1.00087 1.69820 1.03902 1.39677 1.43758 0.86087 0.77431 0.80040 0.82042 1.21679 1.21717 1.20807 1.21268 0.92980 0.91375 0.92512 1.21775 1.00587 0.78827 0.99121 1.74092 1.18688 1.03549 1.11005 1.82017 0.96174 1.03845 1.22879 1.50238 1.06394 1.07800 1.50516 1.22191 1.02463 0.75963 1.04838 0.88740 0.90693 0.87041 0.84578 0.92055 0.91724 0.90969 0.91134 0.91974 0.92222 0.92478 0.87861 0.97177 0.93847 0.96485 0.96051 0.91425 0.88621 0.89141 0.88012 0.88461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 9.51 36.00 0.34 -0.27 16 2 C 0.12 1.15 7.02 -81.88 -0.57 0.58 16 3 C -0.10 -1.19 6.75 -83.55 -0.56 -1.76 16 4 C 0.60 8.48 7.68 -12.48 -0.10 8.38 16 5 O -0.54 -8.49 14.24 5.28 0.08 -8.41 16 6 N -0.59 -7.96 2.97 -174.00 -0.52 -8.48 16 7 C 0.07 0.80 6.32 -3.71 -0.02 0.78 16 8 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 9 C -0.12 -1.53 4.98 -26.68 -0.13 -1.66 16 10 C -0.09 -1.28 1.71 -90.50 -0.15 -1.44 16 11 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 12 C -0.09 -1.63 2.49 -88.79 -0.22 -1.85 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C -0.14 -2.78 5.74 -24.58 -0.14 -2.92 16 15 C 0.15 3.83 5.91 -2.35 -0.01 3.82 16 16 N -0.61 -16.16 3.40 -169.81 -0.58 -16.74 16 17 C -0.22 -6.31 10.28 -15.06 -0.15 -6.47 16 18 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 19 C -0.01 -0.41 5.49 -17.43 -0.10 -0.51 16 20 N -0.92 -27.74 10.11 55.49 0.56 -27.18 16 21 Si 0.91 22.70 29.55 -169.99 -5.02 17.67 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C 0.14 3.12 5.83 -3.07 -0.02 3.10 16 26 C 0.12 1.67 5.44 -3.71 -0.02 1.65 16 27 N -0.20 -2.47 8.70 32.85 0.29 -2.18 16 28 N -0.07 -0.78 13.78 60.35 0.83 0.05 16 29 N -0.36 -2.91 4.03 -63.59 -0.26 -3.16 16 30 C 0.09 0.22 11.33 59.85 0.68 0.90 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.23 7.18 -51.93 -0.37 -0.14 16 33 H 0.11 0.93 6.58 -51.93 -0.34 0.59 16 34 H 0.14 1.62 3.65 -123.26 -0.45 1.17 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.97 7.10 -51.93 -0.37 0.60 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.10 2.94 5.89 -51.93 -0.31 2.63 16 43 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.02 0.47 7.55 -51.93 -0.39 0.07 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.10 1.48 6.55 -51.93 -0.34 1.14 16 49 H 0.09 0.13 8.14 -51.93 -0.42 -0.30 16 50 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 51 H 0.10 0.02 7.16 -51.93 -0.37 -0.35 16 LS Contribution 392.32 15.07 5.91 5.91 Total: -1.00 -35.01 392.32 -8.46 -43.47 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -8.40 Total: -1.62 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -1.35 Total: 0.69 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 0.33 Total: -57.71 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.01 -8.46 -43.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961131581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.796 kcal (2) G-P(sol) polarization free energy of solvation -35.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds