Wall clock time and date at job start Wed Apr 1 2020 05:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30836 * 125.95903 * 2 1 4 4 C 1.33247 * 109.82676 * 180.19569 * 3 2 1 5 5 C 1.50692 * 125.52752 * 179.85866 * 4 3 2 6 6 C 1.50698 * 109.47368 * 269.71720 * 5 4 3 7 7 O 1.21291 * 119.99601 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00281 * 179.97438 * 6 5 4 9 9 C 1.46919 * 120.63234 * 0.02562 * 8 6 5 10 10 C 1.53195 * 108.77845 * 233.62780 * 9 8 6 11 11 C 1.53039 * 109.31257 * 305.36660 * 10 9 8 12 12 C 1.53046 * 109.52798 * 61.36716 * 11 10 9 13 13 H 1.08998 * 109.49692 * 58.57850 * 12 11 10 14 14 C 1.53001 * 109.49566 * 178.67884 * 12 11 10 15 15 H 1.08996 * 110.88776 * 56.12112 * 14 12 11 16 16 C 1.55156 * 111.00294 * 180.02562 * 14 12 11 17 17 C 1.54323 * 102.94537 * 153.57432 * 16 14 12 18 18 N 1.47027 * 107.26855 * 337.80525 * 17 16 14 19 19 C 1.36934 * 125.64653 * 178.91641 * 18 17 16 20 20 H 1.08000 * 119.99643 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00041 * 0.02750 * 19 18 17 22 22 N 1.31622 * 120.00192 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00162 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47380 * 89.99620 * 23 21 19 25 25 H 1.48501 * 109.47411 * 210.00143 * 23 21 19 26 26 H 1.48506 * 109.47201 * 329.99953 * 23 21 19 27 27 C 1.47425 * 108.70055 * 358.94037 * 18 17 16 28 28 C 1.46931 * 120.63154 * 180.02562 * 8 6 5 29 29 N 1.30715 * 108.94569 * 359.59146 * 4 3 2 30 30 N 1.34427 * 125.96138 * 179.76040 * 2 1 3 31 31 H 0.96999 * 126.82404 * 359.97438 * 30 2 1 32 32 H 1.09000 * 109.47311 * 270.24379 * 1 2 3 33 33 H 1.09004 * 109.47037 * 30.24669 * 1 2 3 34 34 H 1.08996 * 109.47176 * 150.23812 * 1 2 3 35 35 H 1.09000 * 109.47321 * 149.71370 * 5 4 3 36 36 H 1.08995 * 109.47347 * 29.71629 * 5 4 3 37 37 H 1.08997 * 109.59005 * 113.84256 * 9 8 6 38 38 H 1.09002 * 109.70256 * 353.48493 * 9 8 6 39 39 H 1.08997 * 109.50026 * 185.40903 * 10 9 8 40 40 H 1.09006 * 109.51801 * 65.33221 * 10 9 8 41 41 H 1.09002 * 109.46050 * 181.38302 * 11 10 9 42 42 H 1.09004 * 109.46034 * 301.35518 * 11 10 9 43 43 H 1.09004 * 110.71822 * 271.93634 * 16 14 12 44 44 H 1.09000 * 110.72052 * 35.03012 * 16 14 12 45 45 H 1.08998 * 109.87716 * 97.22011 * 17 16 14 46 46 H 1.08995 * 109.88474 * 218.23318 * 17 16 14 47 47 H 0.96997 * 119.99958 * 179.97438 * 22 21 19 48 48 H 1.08992 * 110.36562 * 265.28514 * 27 18 17 49 49 H 1.09004 * 110.36279 * 142.96946 * 27 18 17 50 50 H 1.08998 * 109.58959 * 246.15740 * 28 8 6 51 51 H 1.09003 * 109.58181 * 6.44223 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 -0.0043 5 6 4.7372 1.6236 -0.0087 6 6 5.1307 1.9292 -1.4309 7 8 4.5124 1.4360 -2.3505 8 7 6.1695 2.7505 -1.6811 9 6 6.9284 3.3551 -0.5778 10 6 6.9658 4.8733 -0.7788 11 6 7.5219 5.1862 -2.1698 12 6 6.6055 4.5803 -3.2353 13 1 5.6002 4.9865 -3.1243 14 6 7.1442 4.9215 -4.6261 15 1 8.1744 4.5834 -4.7376 16 6 6.2391 4.3233 -5.7353 17 6 6.4815 5.2718 -6.9282 18 7 6.9738 6.5445 -6.3809 19 6 7.3280 7.6450 -7.1148 20 1 7.6801 8.5360 -6.6162 21 6 7.2346 7.6154 -8.4994 22 7 6.8061 6.5293 -9.1070 23 14 7.7172 9.1168 -9.5005 24 1 9.1598 9.0399 -9.8442 25 1 6.9126 9.1596 -10.7479 26 1 7.4627 10.3448 -8.7051 27 6 7.0235 6.4393 -4.9113 28 6 6.5647 3.0584 -3.0624 29 7 3.6194 -0.6168 0.0017 30 7 2.2964 -1.0881 0.0046 31 1 2.0093 -2.0146 0.0088 32 1 -0.3634 0.0044 1.0276 33 1 -0.3633 0.8878 -0.5177 34 1 -0.3633 -0.8921 -0.5101 35 1 5.5744 1.1532 0.5069 36 1 4.4703 2.5492 0.5013 37 1 7.9449 2.9618 -0.5749 38 1 6.4444 3.1239 0.3711 39 1 7.6059 5.3250 -0.0210 40 1 5.9571 5.2773 -0.6909 41 1 7.5726 6.2665 -2.3061 42 1 8.5210 4.7609 -2.2656 43 1 6.5499 3.3078 -5.9807 44 1 5.1926 4.3419 -5.4308 45 1 7.2273 4.8427 -7.5973 46 1 5.5487 5.4341 -7.4683 47 1 6.7405 6.5087 -10.0746 48 1 6.1088 6.8364 -4.4714 49 1 7.8934 6.9687 -4.5223 50 1 7.5516 2.6410 -3.2618 51 1 5.8398 2.6292 -3.7541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961161490.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:20 Heat of formation + Delta-G solvation = 65.304183 kcal Electronic energy + Delta-G solvation = -30711.393250 eV Core-core repulsion = 26647.671023 eV Total energy + Delta-G solvation = -4063.722227 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.43015 -40.30122 -38.26370 -36.64539 -34.06833 -33.55544 -32.64978 -32.28608 -31.25279 -30.16363 -28.85101 -28.11830 -27.03510 -25.42414 -24.35670 -22.83271 -22.09885 -21.32045 -20.52481 -19.81397 -19.43520 -18.93267 -18.15346 -17.43863 -16.72417 -16.10494 -15.76549 -15.65622 -14.99312 -14.59013 -14.47421 -14.43458 -14.02029 -13.90965 -13.75183 -13.47501 -13.32957 -13.15791 -13.10070 -12.99025 -12.33487 -12.22680 -12.12103 -12.07810 -11.90530 -11.71490 -11.19184 -10.96999 -10.96015 -10.81723 -10.71537 -10.53503 -10.44786 -10.29808 -10.04394 -9.99996 -9.89723 -9.73608 -9.65014 -9.60847 -9.48704 -8.64439 -8.52397 -6.73913 -5.63426 -2.96581 1.29475 2.30247 2.46187 2.54444 3.01214 3.44189 3.48740 3.51128 3.63526 4.18999 4.36718 4.44466 4.55431 4.63980 4.80304 4.85734 4.88002 4.96009 5.00975 5.03335 5.20172 5.26058 5.31340 5.37749 5.49110 5.54525 5.61985 5.63416 5.72414 5.79870 5.86785 5.93671 5.99431 6.04256 6.07437 6.11998 6.14460 6.33836 6.36533 6.49968 6.54589 6.66650 6.70166 6.74179 6.84880 7.07944 7.30115 7.64777 7.74847 7.81554 7.92094 8.08955 8.34849 9.30258 9.91109 10.58308 11.48225 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.002089 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.731536 B =13403.515950 C =14374.953213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.284 3.716 3 N -0.530 5.530 4 C 0.251 3.749 5 C -0.048 4.048 6 C 0.523 3.477 7 O -0.529 6.529 8 N -0.610 5.610 9 C 0.105 3.895 10 C -0.135 4.135 11 C -0.116 4.116 12 C -0.086 4.086 13 H 0.074 0.926 14 C -0.095 4.095 15 H 0.074 0.926 16 C -0.141 4.141 17 C 0.178 3.822 18 N -0.607 5.607 19 C -0.226 4.226 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.922 5.922 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.145 3.855 28 C 0.118 3.882 29 N -0.305 5.305 30 N -0.482 5.482 31 H 0.440 0.560 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.040 0.960 47 H 0.251 0.749 48 H 0.016 0.984 49 H 0.035 0.965 50 H 0.067 0.933 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.755 -14.179 25.365 29.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.006 3.994 3 N -0.259 5.259 4 C -0.032 4.032 5 C -0.090 4.090 6 C 0.308 3.692 7 O -0.405 6.405 8 N -0.344 5.344 9 C -0.018 4.018 10 C -0.174 4.174 11 C -0.153 4.153 12 C -0.106 4.106 13 H 0.092 0.908 14 C -0.115 4.115 15 H 0.092 0.908 16 C -0.179 4.179 17 C 0.053 3.947 18 N -0.333 5.333 19 C -0.354 4.354 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.570 5.570 23 Si 0.742 3.258 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.019 3.981 28 C -0.003 4.003 29 N -0.134 5.134 30 N -0.201 5.201 31 H 0.285 0.715 32 H 0.110 0.890 33 H 0.118 0.882 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.140 0.860 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.062 0.938 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.034 0.966 49 H 0.054 0.946 50 H 0.085 0.915 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.508 -14.401 24.642 29.274 hybrid contribution -0.041 0.151 -0.637 0.656 sum -6.549 -14.250 24.004 28.673 Atomic orbital electron populations 1.20404 0.83555 1.05246 1.04477 1.24379 0.96645 0.82721 0.95661 1.70310 1.01232 1.29565 1.24837 1.23251 0.92660 0.89716 0.97559 1.19934 0.93671 0.98783 0.96621 1.20117 0.79760 0.78812 0.90462 1.90747 1.52287 1.51159 1.46301 1.48086 1.31488 1.46812 1.07967 1.21810 0.96698 0.93987 0.89345 1.21938 1.02282 0.94830 0.98314 1.21597 0.98874 1.01671 0.93192 1.21472 0.99997 0.94106 0.95036 0.90771 1.22310 0.99170 0.97933 0.92043 0.90801 1.22927 0.98418 0.99122 0.97423 1.21111 0.98643 0.83932 0.90979 1.44498 1.77008 1.12325 0.99512 1.19055 1.36702 0.91193 0.88471 0.90548 1.24811 1.01802 0.97619 0.96465 1.69983 1.52396 1.26548 1.08058 0.86129 0.77845 0.82034 0.79817 1.21687 1.21733 1.20749 1.21520 0.97530 0.92468 0.86596 1.21743 1.01051 0.95824 0.81705 1.77959 0.96792 1.12179 1.26508 1.47922 1.04223 1.10020 1.57887 0.71501 0.88975 0.88179 0.89820 0.86563 0.86009 0.91026 0.89960 0.90687 0.91322 0.91002 0.91782 0.92433 0.92557 0.93796 0.94208 0.93846 0.96620 0.94634 0.91507 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.51 36.00 0.38 0.03 16 2 C 0.28 2.69 8.24 -155.69 -1.28 1.40 16 3 N -0.53 -6.79 11.19 -8.16 -0.09 -6.89 16 4 C 0.25 3.21 6.63 -156.85 -1.04 2.17 16 5 C -0.05 -0.48 4.67 -29.04 -0.14 -0.61 16 6 C 0.52 7.00 7.69 -10.99 -0.08 6.92 16 7 O -0.53 -9.59 15.45 5.55 0.09 -9.51 16 8 N -0.61 -7.06 2.97 -172.75 -0.51 -7.57 16 9 C 0.10 0.81 6.34 -3.71 -0.02 0.79 16 10 C -0.14 -1.13 6.08 -26.61 -0.16 -1.29 16 11 C -0.12 -1.28 5.05 -26.69 -0.13 -1.42 16 12 C -0.09 -1.19 1.86 -90.48 -0.17 -1.36 16 13 H 0.07 1.13 8.08 -51.93 -0.42 0.72 16 14 C -0.09 -1.64 2.56 -88.47 -0.23 -1.87 16 15 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 16 C -0.14 -2.77 5.41 -24.90 -0.13 -2.91 16 17 C 0.18 4.53 5.37 -3.06 -0.02 4.51 16 18 N -0.61 -16.05 3.39 -170.08 -0.58 -16.63 16 19 C -0.23 -6.48 10.28 -15.06 -0.15 -6.63 16 20 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.32 5.49 -17.43 -0.10 -0.41 16 22 N -0.92 -28.01 10.31 55.49 0.57 -27.44 16 23 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.15 3.04 5.94 -2.53 -0.02 3.02 16 28 C 0.12 1.59 5.39 -3.69 -0.02 1.57 16 29 N -0.31 -3.85 12.80 32.42 0.41 -3.44 16 30 N -0.48 -4.39 7.45 32.62 0.24 -4.15 16 31 H 0.44 2.23 8.96 -182.33 -1.63 0.59 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.12 0.83 7.94 -51.93 -0.41 0.42 16 36 H 0.12 0.94 7.69 -51.93 -0.40 0.54 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.43 5.94 -51.93 -0.31 0.12 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.85 7.45 -51.93 -0.39 0.46 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 45 H 0.04 1.23 7.38 -51.93 -0.38 0.84 16 46 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 47 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.02 0.34 7.99 -51.93 -0.41 -0.08 16 49 H 0.04 0.72 8.05 -51.93 -0.42 0.30 16 50 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.09 1.52 6.39 -51.93 -0.33 1.19 16 LS Contribution 400.92 15.07 6.04 6.04 Total: -1.00 -38.80 400.92 -11.85 -50.66 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -9.69 Total: -2.63 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -3.32 Total: 3.92 kcal Atomic # 7 Polarization: -66.16 SS G_CDS: 0.05 Total: -66.11 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.80 -11.85 -50.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961161490.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.962 kcal (2) G-P(sol) polarization free energy of solvation -38.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds