Wall clock time and date at job start Wed Apr 1 2020 05:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30836 * 125.95903 * 2 1 4 4 C 1.33247 * 109.82676 * 180.19569 * 3 2 1 5 5 C 1.50692 * 125.52752 * 179.85866 * 4 3 2 6 6 C 1.50698 * 109.47368 * 269.71720 * 5 4 3 7 7 O 1.21291 * 119.99601 * 359.97438 * 6 5 4 8 8 N 1.34771 * 120.00281 * 179.97438 * 6 5 4 9 9 C 1.46919 * 120.63234 * 0.02562 * 8 6 5 10 10 C 1.53195 * 108.77845 * 233.62780 * 9 8 6 11 11 C 1.53039 * 109.31257 * 305.36660 * 10 9 8 12 12 C 1.53046 * 109.52798 * 61.36716 * 11 10 9 13 13 H 1.08998 * 109.49692 * 58.57850 * 12 11 10 14 14 C 1.53001 * 109.49566 * 178.67884 * 12 11 10 15 15 H 1.08996 * 110.88776 * 56.12112 * 14 12 11 16 16 C 1.55156 * 111.00294 * 180.02562 * 14 12 11 17 17 C 1.54323 * 102.94537 * 153.57432 * 16 14 12 18 18 N 1.47027 * 107.26855 * 337.80525 * 17 16 14 19 19 C 1.36934 * 125.64653 * 178.91641 * 18 17 16 20 20 H 1.08000 * 119.99643 * 180.02562 * 19 18 17 21 21 C 1.38810 * 120.00041 * 0.02750 * 19 18 17 22 22 N 1.31622 * 120.00192 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00162 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47380 * 89.99620 * 23 21 19 25 25 H 1.48501 * 109.47411 * 210.00143 * 23 21 19 26 26 H 1.48506 * 109.47201 * 329.99953 * 23 21 19 27 27 C 1.47425 * 108.70055 * 358.94037 * 18 17 16 28 28 C 1.46931 * 120.63154 * 180.02562 * 8 6 5 29 29 N 1.30715 * 108.94569 * 359.59146 * 4 3 2 30 30 N 1.34427 * 125.96138 * 179.76040 * 2 1 3 31 31 H 0.96999 * 126.82404 * 359.97438 * 30 2 1 32 32 H 1.09000 * 109.47311 * 270.24379 * 1 2 3 33 33 H 1.09004 * 109.47037 * 30.24669 * 1 2 3 34 34 H 1.08996 * 109.47176 * 150.23812 * 1 2 3 35 35 H 1.09000 * 109.47321 * 149.71370 * 5 4 3 36 36 H 1.08995 * 109.47347 * 29.71629 * 5 4 3 37 37 H 1.08997 * 109.59005 * 113.84256 * 9 8 6 38 38 H 1.09002 * 109.70256 * 353.48493 * 9 8 6 39 39 H 1.08997 * 109.50026 * 185.40903 * 10 9 8 40 40 H 1.09006 * 109.51801 * 65.33221 * 10 9 8 41 41 H 1.09002 * 109.46050 * 181.38302 * 11 10 9 42 42 H 1.09004 * 109.46034 * 301.35518 * 11 10 9 43 43 H 1.09004 * 110.71822 * 271.93634 * 16 14 12 44 44 H 1.09000 * 110.72052 * 35.03012 * 16 14 12 45 45 H 1.08998 * 109.87716 * 97.22011 * 17 16 14 46 46 H 1.08995 * 109.88474 * 218.23318 * 17 16 14 47 47 H 0.96997 * 119.99958 * 179.97438 * 22 21 19 48 48 H 1.08992 * 110.36562 * 265.28514 * 27 18 17 49 49 H 1.09004 * 110.36279 * 142.96946 * 27 18 17 50 50 H 1.08998 * 109.58959 * 246.15740 * 28 8 6 51 51 H 1.09003 * 109.58181 * 6.44223 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5553 0.6888 -0.0043 5 6 4.7372 1.6236 -0.0087 6 6 5.1307 1.9292 -1.4309 7 8 4.5124 1.4360 -2.3505 8 7 6.1695 2.7505 -1.6811 9 6 6.9284 3.3551 -0.5778 10 6 6.9658 4.8733 -0.7788 11 6 7.5219 5.1862 -2.1698 12 6 6.6055 4.5803 -3.2353 13 1 5.6002 4.9865 -3.1243 14 6 7.1442 4.9215 -4.6261 15 1 8.1744 4.5834 -4.7376 16 6 6.2391 4.3233 -5.7353 17 6 6.4815 5.2718 -6.9282 18 7 6.9738 6.5445 -6.3809 19 6 7.3280 7.6450 -7.1148 20 1 7.6801 8.5360 -6.6162 21 6 7.2346 7.6154 -8.4994 22 7 6.8061 6.5293 -9.1070 23 14 7.7172 9.1168 -9.5005 24 1 9.1598 9.0399 -9.8442 25 1 6.9126 9.1596 -10.7479 26 1 7.4627 10.3448 -8.7051 27 6 7.0235 6.4393 -4.9113 28 6 6.5647 3.0584 -3.0624 29 7 3.6194 -0.6168 0.0017 30 7 2.2964 -1.0881 0.0046 31 1 2.0093 -2.0146 0.0088 32 1 -0.3634 0.0044 1.0276 33 1 -0.3633 0.8878 -0.5177 34 1 -0.3633 -0.8921 -0.5101 35 1 5.5744 1.1532 0.5069 36 1 4.4703 2.5492 0.5013 37 1 7.9449 2.9618 -0.5749 38 1 6.4444 3.1239 0.3711 39 1 7.6059 5.3250 -0.0210 40 1 5.9571 5.2773 -0.6909 41 1 7.5726 6.2665 -2.3061 42 1 8.5210 4.7609 -2.2656 43 1 6.5499 3.3078 -5.9807 44 1 5.1926 4.3419 -5.4308 45 1 7.2273 4.8427 -7.5973 46 1 5.5487 5.4341 -7.4683 47 1 6.7405 6.5087 -10.0746 48 1 6.1088 6.8364 -4.4714 49 1 7.8934 6.9687 -4.5223 50 1 7.5516 2.6410 -3.2618 51 1 5.8398 2.6292 -3.7541 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961161490.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:19 Heat of formation + Delta-G solvation = 38.869474 kcal Electronic energy + Delta-G solvation = -30712.539545 eV Core-core repulsion = 26647.671023 eV Total energy + Delta-G solvation = -4064.868522 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.18617 -41.29694 -39.67192 -37.99131 -35.25902 -34.67942 -33.63291 -33.36747 -32.53511 -31.15058 -30.54631 -28.95904 -28.43460 -26.60352 -26.02722 -23.95449 -22.96305 -22.23947 -21.71508 -21.46689 -20.81341 -19.83277 -18.89506 -18.83779 -18.30803 -17.03345 -16.93350 -16.60914 -16.46863 -16.10072 -15.70644 -15.40551 -15.28860 -15.01537 -14.67897 -14.41106 -14.19809 -14.06807 -13.93088 -13.81670 -13.66142 -13.60230 -13.55313 -13.21618 -13.10743 -12.83630 -12.75878 -12.73445 -12.28306 -12.09071 -12.04488 -11.96882 -11.73578 -11.67366 -11.41423 -11.37068 -11.24667 -11.11935 -11.01856 -10.81904 -10.71772 -10.44245 -9.60327 -8.90311 -7.84881 -5.21118 0.54693 1.44206 1.47293 1.55850 1.56653 1.61266 1.72893 2.16833 2.49612 2.99275 3.32910 3.49435 3.54627 3.65316 3.74858 3.85454 3.88545 3.95512 4.15719 4.19584 4.27203 4.35206 4.38204 4.39913 4.46336 4.56819 4.65584 4.69614 4.72882 4.74081 4.83103 4.89669 4.94011 4.95968 4.99324 5.03952 5.06642 5.18315 5.21361 5.24039 5.34103 5.40024 5.44944 5.46077 5.58086 5.59267 5.65351 5.75920 6.19321 6.19334 6.41052 7.05426 7.09296 7.13705 7.77888 8.43712 9.25991 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.002089 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.731536 B =13403.515950 C =14374.953213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.285 3.715 3 N -0.571 5.571 4 C 0.234 3.766 5 C -0.042 4.042 6 C 0.517 3.483 7 O -0.588 6.588 8 N -0.605 5.605 9 C 0.098 3.902 10 C -0.129 4.129 11 C -0.114 4.114 12 C -0.073 4.073 13 H 0.057 0.943 14 C -0.076 4.076 15 H 0.081 0.919 16 C -0.127 4.127 17 C 0.187 3.813 18 N -0.630 5.630 19 C -0.241 4.241 20 H 0.086 0.914 21 C -0.074 4.074 22 N -0.956 5.956 23 Si 0.982 3.018 24 H -0.284 1.284 25 H -0.296 1.296 26 H -0.266 1.266 27 C 0.142 3.858 28 C 0.122 3.878 29 N -0.337 5.337 30 N -0.475 5.475 31 H 0.455 0.545 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.092 0.908 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.010 0.990 46 H -0.002 1.002 47 H 0.246 0.754 48 H 0.017 0.983 49 H 0.048 0.952 50 H 0.079 0.921 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 -14.028 28.750 32.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.007 3.993 3 N -0.301 5.301 4 C -0.049 4.049 5 C -0.083 4.083 6 C 0.305 3.695 7 O -0.468 6.468 8 N -0.337 5.337 9 C -0.023 4.023 10 C -0.167 4.167 11 C -0.152 4.152 12 C -0.093 4.093 13 H 0.075 0.925 14 C -0.096 4.096 15 H 0.099 0.901 16 C -0.165 4.165 17 C 0.062 3.938 18 N -0.356 5.356 19 C -0.370 4.370 20 H 0.103 0.897 21 C -0.266 4.266 22 N -0.605 5.605 23 Si 0.810 3.190 24 H -0.210 1.210 25 H -0.223 1.223 26 H -0.191 1.191 27 C 0.017 3.983 28 C -0.001 4.001 29 N -0.167 5.167 30 N -0.195 5.195 31 H 0.303 0.697 32 H 0.134 0.866 33 H 0.113 0.887 34 H 0.128 0.872 35 H 0.166 0.834 36 H 0.164 0.836 37 H 0.110 0.890 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.028 0.972 46 H 0.016 0.984 47 H 0.055 0.945 48 H 0.034 0.966 49 H 0.067 0.933 50 H 0.097 0.903 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.740 -14.248 28.104 32.028 hybrid contribution -0.333 0.088 -1.681 1.716 sum -6.073 -14.160 26.423 30.587 Atomic orbital electron populations 1.20640 0.80231 1.06232 1.06272 1.25219 0.98291 0.82089 0.93694 1.70309 1.01810 1.31348 1.26640 1.23748 0.93487 0.90161 0.97514 1.20069 0.94021 0.99792 0.94446 1.20747 0.79258 0.78146 0.91335 1.90718 1.54321 1.53541 1.48257 1.48168 1.31210 1.46235 1.08087 1.22190 0.97649 0.93294 0.89185 1.21920 1.02353 0.95372 0.97080 1.21598 0.98783 1.01001 0.93821 1.21301 0.99644 0.94669 0.93687 0.92459 1.22196 0.99070 0.94929 0.93379 0.90109 1.22756 0.99163 0.98578 0.96053 1.20844 0.95453 0.85053 0.92496 1.44853 1.76852 1.12004 1.01939 1.19514 1.36068 0.92222 0.89157 0.89653 1.25753 1.02360 1.00733 0.97757 1.70230 1.53794 1.28703 1.07768 0.85016 0.77337 0.78848 0.77766 1.21034 1.22282 1.19109 1.21704 0.97887 0.95115 0.83560 1.21520 1.00708 0.95076 0.82773 1.77839 0.98772 1.12500 1.27585 1.47865 1.03311 1.10967 1.57390 0.69660 0.86585 0.88750 0.87210 0.83445 0.83566 0.89010 0.86680 0.87626 0.92052 0.91675 0.90565 0.90913 0.92635 0.97177 0.98413 0.94527 0.96559 0.93345 0.90258 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.51 71.24 0.75 0.22 16 2 C 0.28 5.12 8.24 138.22 1.14 6.26 16 3 N -0.57 -14.36 11.19 -179.73 -2.01 -16.38 16 4 C 0.23 5.82 6.63 138.63 0.92 6.74 16 5 C -0.04 -0.75 4.67 29.10 0.14 -0.61 16 6 C 0.52 13.38 7.69 87.66 0.67 14.06 16 7 O -0.59 -21.88 15.45 -3.06 -0.05 -21.93 16 8 N -0.60 -12.79 2.97 -818.85 -2.43 -15.22 16 9 C 0.10 1.10 6.34 86.36 0.55 1.65 16 10 C -0.13 -1.64 6.08 30.67 0.19 -1.45 16 11 C -0.11 -2.20 5.05 30.62 0.15 -2.04 16 12 C -0.07 -1.94 1.86 -10.70 -0.02 -1.95 16 13 H 0.06 1.73 8.08 -2.39 -0.02 1.71 16 14 C -0.08 -2.60 2.56 -9.40 -0.02 -2.63 16 15 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 16 C -0.13 -5.18 5.41 31.78 0.17 -5.00 16 17 C 0.19 10.02 5.37 86.73 0.47 10.48 16 18 N -0.63 -34.18 3.39 -692.00 -2.35 -36.53 16 19 C -0.24 -14.04 10.28 84.03 0.86 -13.17 16 20 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 21 C -0.07 -4.38 5.49 84.86 0.47 -3.92 16 22 N -0.96 -60.57 10.31 21.65 0.22 -60.35 16 23 Si 0.98 47.34 29.55 68.60 2.03 49.37 16 24 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 27 C 0.14 5.93 5.94 86.85 0.52 6.44 16 28 C 0.12 3.17 5.39 86.37 0.47 3.63 16 29 N -0.34 -8.34 12.80 -51.34 -0.66 -8.99 16 30 N -0.48 -8.27 7.45 -50.71 -0.38 -8.65 16 31 H 0.45 4.13 8.96 -213.10 -1.91 2.22 16 32 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 0.19 8.14 -2.39 -0.02 0.18 16 35 H 0.15 1.63 7.94 -2.39 -0.02 1.61 16 36 H 0.15 1.82 7.69 -2.39 -0.02 1.81 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.12 0.60 5.94 -2.39 -0.01 0.59 16 39 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.06 1.36 7.45 -2.39 -0.02 1.34 16 42 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.07 2.72 8.14 -2.38 -0.02 2.71 16 44 H 0.05 2.25 8.04 -2.39 -0.02 2.24 16 45 H 0.01 0.59 7.38 -2.39 -0.02 0.58 16 46 H 0.00 -0.15 7.50 -2.39 -0.02 -0.16 16 47 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 48 H 0.02 0.69 7.99 -2.39 -0.02 0.68 16 49 H 0.05 1.90 8.05 -2.39 -0.02 1.88 16 50 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.06 2.06 6.39 -2.39 -0.02 2.05 16 Total: -1.00 -90.70 400.92 0.81 -89.89 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -0.97 Total: 10.09 kcal Atomic # 6 Polarization: 11.29 SS G_CDS: 7.41 Total: 18.70 kcal Atomic # 7 Polarization: -138.52 SS G_CDS: -7.60 Total: -146.12 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.05 Total: -21.93 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -90.70 0.81 -89.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961161490.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.759 kcal (2) G-P(sol) polarization free energy of solvation -90.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds