Wall clock time and date at job start Wed Apr 1 2020 05:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33318 * 126.81419 * 2 1 4 4 N 1.28505 * 109.43793 * 179.97438 * 3 2 1 5 5 N 1.28714 * 110.63963 * 359.71788 * 4 3 2 6 6 H 0.97006 * 126.03556 * 180.30156 * 5 4 3 7 7 C 1.37002 * 126.81452 * 179.97438 * 2 1 3 8 8 C 1.47233 * 127.18823 * 0.02562 * 7 2 1 9 9 O 1.21626 * 120.00183 * 256.13186 * 8 7 2 10 10 N 1.34779 * 120.00668 * 76.12662 * 8 7 2 11 11 C 1.46924 * 120.63566 * 174.06399 * 10 8 7 12 12 C 1.53198 * 108.77282 * 233.63037 * 11 10 8 13 13 C 1.53036 * 109.31552 * 305.36546 * 12 11 10 14 14 C 1.52996 * 109.46182 * 181.38741 * 13 12 11 15 15 H 1.09004 * 109.49484 * 300.03585 * 14 13 12 16 16 C 1.53043 * 109.52572 * 60.11330 * 14 13 12 17 17 C 1.53036 * 109.53716 * 181.33175 * 16 14 13 18 18 C 1.53189 * 109.31707 * 298.63732 * 17 16 14 19 19 N 1.46924 * 108.77291 * 54.63964 * 18 17 16 20 20 C 1.36935 * 120.63455 * 126.39402 * 19 18 17 21 21 H 1.08007 * 120.00047 * 214.79867 * 20 19 18 22 22 C 1.38810 * 119.99889 * 34.79547 * 20 19 18 23 23 N 1.31618 * 120.00252 * 12.78809 * 22 20 19 24 24 Si 1.86799 * 119.99876 * 192.79512 * 22 20 19 25 25 H 1.48497 * 109.47375 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47298 * 119.99596 * 24 22 20 27 27 H 1.48497 * 109.47218 * 239.99667 * 24 22 20 28 28 C 1.46930 * 118.73634 * 306.38966 * 19 18 17 29 29 C 1.53044 * 109.52747 * 61.37286 * 13 12 11 30 30 C 1.46928 * 120.62552 * 354.08683 * 10 8 7 31 31 H 1.09005 * 109.46812 * 270.01953 * 1 2 3 32 32 H 1.09002 * 109.47582 * 30.01984 * 1 2 3 33 33 H 1.09000 * 109.47664 * 150.02477 * 1 2 3 34 34 H 1.08996 * 109.58481 * 113.84395 * 11 10 8 35 35 H 1.08997 * 109.58505 * 353.41718 * 11 10 8 36 36 H 1.09000 * 109.49374 * 185.40853 * 12 11 10 37 37 H 1.09004 * 109.49564 * 65.31927 * 12 11 10 38 38 H 1.09000 * 109.45779 * 301.36010 * 13 12 11 39 39 H 1.08995 * 109.46133 * 301.35892 * 16 14 13 40 40 H 1.09008 * 109.45356 * 61.32864 * 16 14 13 41 41 H 1.08999 * 109.49592 * 58.59857 * 17 16 14 42 42 H 1.09003 * 109.49296 * 178.68624 * 17 16 14 43 43 H 1.09004 * 109.58601 * 174.42265 * 18 17 16 44 44 H 1.08997 * 109.58823 * 294.70751 * 18 17 16 45 45 H 0.97004 * 120.00164 * 179.97438 * 23 22 20 46 46 H 1.09007 * 109.58647 * 293.82055 * 28 19 18 47 47 H 1.08999 * 109.58875 * 173.40205 * 28 19 18 48 48 H 1.08995 * 109.49461 * 58.57891 * 29 13 12 49 49 H 1.09001 * 109.49931 * 178.67667 * 29 13 12 50 50 H 1.08998 * 109.58996 * 246.15900 * 30 10 8 51 51 H 1.09005 * 109.58855 * 6.58604 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5323 0.6835 0.0005 5 7 3.6055 -0.6015 0.0068 6 1 4.4212 -1.1266 0.0127 7 6 2.3279 -1.0968 0.0005 8 6 1.9222 -2.5121 0.0006 9 8 1.9969 -3.1661 1.0233 10 7 1.4678 -3.0831 -1.1326 11 6 1.1821 -4.5234 -1.1827 12 6 1.9474 -5.1372 -2.3593 13 6 1.5943 -4.3814 -3.6423 14 6 2.3303 -5.0136 -4.8253 15 1 3.4057 -4.9596 -4.6556 16 6 1.9083 -6.4779 -4.9668 17 6 2.6690 -7.1196 -6.1294 18 6 2.3195 -6.3879 -7.4291 19 7 2.5870 -4.9542 -7.2512 20 6 3.3896 -4.2797 -8.1321 21 1 4.0285 -3.4833 -7.7797 22 6 3.3820 -4.6194 -9.4780 23 7 2.4377 -5.4032 -9.9537 24 14 4.7122 -3.9642 -10.6141 25 1 5.6487 -3.1110 -9.8395 26 1 5.4571 -5.1014 -11.2118 27 1 4.0880 -3.1590 -11.6945 28 6 1.9770 -4.2580 -6.1102 29 6 2.0142 -2.9161 -3.5048 30 6 1.2493 -2.2771 -2.3414 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5134 34 1 0.1123 -4.6791 -1.3216 35 1 1.5040 -4.9924 -0.2529 36 1 1.6697 -6.1858 -2.4666 37 1 3.0191 -5.0613 -2.1755 38 1 0.5191 -4.4366 -3.8121 39 1 2.1363 -7.0122 -4.0446 40 1 0.8370 -6.5298 -5.1614 41 1 3.7412 -7.0460 -5.9473 42 1 2.3853 -8.1686 -6.2148 43 1 2.9323 -6.7758 -8.2429 44 1 1.2653 -6.5391 -7.6613 45 1 2.4322 -5.6403 -10.8943 46 1 0.8942 -4.2333 -6.2336 47 1 2.3636 -3.2405 -6.0538 48 1 3.0852 -2.8613 -3.3101 49 1 1.7839 -2.3835 -4.4275 50 1 0.1850 -2.2495 -2.5748 51 1 1.6156 -1.2638 -2.1761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961394182.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:49 Heat of formation + Delta-G solvation = 64.093927 kcal Electronic energy + Delta-G solvation = -31651.738460 eV Core-core repulsion = 27587.963752 eV Total energy + Delta-G solvation = -4063.774708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.72423 -40.49932 -38.67915 -36.87935 -34.46838 -34.17112 -32.98796 -32.30451 -31.39837 -30.33991 -29.39627 -28.26972 -25.68327 -25.32663 -24.26677 -23.47804 -22.67702 -21.72070 -21.59519 -20.58467 -19.76202 -19.11158 -18.42686 -17.62543 -16.76381 -16.68912 -16.16135 -15.59047 -14.96519 -14.54627 -14.47221 -14.37092 -14.04809 -13.90173 -13.82645 -13.53910 -13.38581 -13.22793 -13.06224 -12.92684 -12.63935 -12.52153 -12.34126 -12.16710 -11.90656 -11.50682 -11.45430 -11.30110 -11.01273 -10.93684 -10.87473 -10.81712 -10.63010 -10.40148 -10.31480 -10.18715 -10.15445 -9.93007 -9.58009 -9.49197 -9.31112 -9.03055 -8.50945 -6.58747 -5.82309 -3.32467 0.82845 1.60173 1.97746 2.29930 2.71050 3.32967 3.41171 3.42865 3.80621 4.01453 4.35164 4.44013 4.52144 4.68387 4.70332 4.80193 4.84970 5.04178 5.15617 5.19353 5.22773 5.27945 5.34829 5.41775 5.42663 5.49080 5.55560 5.58121 5.65995 5.73045 5.76163 5.82982 5.87171 5.96916 6.06988 6.16592 6.21639 6.27355 6.35806 6.39433 6.42048 6.61400 6.67395 6.80916 6.84575 6.87209 6.99986 7.35405 7.52137 7.61900 7.77106 7.94572 8.46602 9.19751 9.81058 10.41914 11.25622 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.002626 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.610446 B =10658.309826 C =11903.816957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.026 3.974 3 N -0.261 5.261 4 N -0.053 5.053 5 N -0.365 5.365 6 H 0.454 0.546 7 C -0.051 4.051 8 C 0.593 3.407 9 O -0.523 6.523 10 N -0.589 5.589 11 C 0.112 3.888 12 C -0.130 4.130 13 C -0.079 4.079 14 C -0.097 4.097 15 H 0.064 0.936 16 C -0.103 4.103 17 C -0.143 4.143 18 C 0.174 3.826 19 N -0.591 5.591 20 C -0.257 4.257 21 H 0.061 0.939 22 C 0.009 3.991 23 N -0.900 5.900 24 Si 0.900 3.100 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.289 1.289 28 C 0.154 3.846 29 C -0.131 4.131 30 C 0.102 3.898 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.018 0.982 45 H 0.253 0.747 46 H 0.015 0.985 47 H 0.052 0.948 48 H 0.065 0.935 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.131 3.751 19.307 20.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 N -0.128 5.128 4 N -0.034 5.034 5 N -0.089 5.089 6 H 0.301 0.699 7 C -0.187 4.187 8 C 0.376 3.624 9 O -0.397 6.397 10 N -0.322 5.322 11 C -0.009 4.009 12 C -0.168 4.168 13 C -0.099 4.099 14 C -0.118 4.118 15 H 0.082 0.918 16 C -0.140 4.140 17 C -0.183 4.183 18 C 0.048 3.952 19 N -0.313 5.313 20 C -0.387 4.387 21 H 0.078 0.922 22 C -0.191 4.191 23 N -0.543 5.543 24 Si 0.730 3.270 25 H -0.202 1.202 26 H -0.215 1.215 27 H -0.216 1.216 28 C 0.027 3.973 29 C -0.169 4.169 30 C -0.020 4.020 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.036 0.964 45 H 0.063 0.937 46 H 0.033 0.967 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.106 0.894 50 H 0.098 0.902 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.415 4.729 19.655 20.502 hybrid contribution 0.778 -1.011 -0.782 1.496 sum -2.637 3.718 18.872 19.415 Atomic orbital electron populations 1.20239 0.85246 1.04145 1.03807 1.22239 0.98329 0.87113 1.03725 1.74863 0.95222 1.25896 1.16839 1.78227 1.15767 0.91841 1.17519 1.45358 1.08419 1.06714 1.48452 0.69905 1.21785 0.86005 0.96469 1.14439 1.16837 0.78260 0.83475 0.83783 1.90866 1.54593 1.62781 1.31494 1.48077 1.63746 1.09801 1.10600 1.21806 1.00360 0.78241 1.00502 1.22060 1.00549 1.00331 0.93870 1.21163 1.00641 0.93617 0.94440 1.21684 0.99399 0.95633 0.95036 0.91763 1.21471 0.99702 0.95276 0.97590 1.22188 0.99589 0.98212 0.98281 1.20677 0.98142 0.83330 0.93027 1.43948 1.55686 1.04282 1.27382 1.19133 1.15654 1.16620 0.87299 0.92151 1.25224 0.97357 0.99603 0.96867 1.70013 1.31838 1.39093 1.13374 0.86266 0.81531 0.78348 0.80871 1.20206 1.21535 1.21583 1.20957 0.95190 0.94543 0.86592 1.22035 1.00214 0.96792 0.97852 1.21983 1.01358 0.94572 0.84088 0.89865 0.89400 0.90419 0.90702 0.88945 0.89821 0.91650 0.90931 0.93609 0.92874 0.92972 0.93524 0.90656 0.96418 0.93660 0.96705 0.92997 0.91669 0.89409 0.90191 0.90088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.28 36.00 0.37 -0.16 16 2 C 0.03 0.26 6.49 -82.40 -0.53 -0.28 16 3 N -0.26 -3.13 12.35 33.51 0.41 -2.71 16 4 N -0.05 -0.60 13.35 60.35 0.81 0.20 16 5 N -0.36 -3.34 7.07 33.31 0.24 -3.10 16 6 H 0.45 2.75 8.96 -190.32 -1.71 1.04 16 7 C -0.05 -0.51 5.39 -82.34 -0.44 -0.95 16 8 C 0.59 6.29 7.32 -12.60 -0.09 6.20 16 9 O -0.52 -7.11 16.55 5.25 0.09 -7.02 16 10 N -0.59 -5.36 2.97 -174.10 -0.52 -5.87 16 11 C 0.11 0.98 6.42 -3.71 -0.02 0.95 16 12 C -0.13 -1.23 5.05 -26.61 -0.13 -1.37 16 13 C -0.08 -0.87 1.74 -90.58 -0.16 -1.03 16 14 C -0.10 -1.46 1.92 -90.50 -0.17 -1.63 16 15 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 16 C -0.10 -1.56 4.86 -26.69 -0.13 -1.69 16 17 C -0.14 -2.61 6.08 -26.61 -0.16 -2.77 16 18 C 0.17 4.02 5.24 -3.71 -0.02 4.00 16 19 N -0.59 -14.23 2.96 -172.32 -0.51 -14.74 16 20 C -0.26 -6.89 9.52 -15.06 -0.14 -7.03 16 21 H 0.06 1.60 7.86 -52.48 -0.41 1.19 16 22 C 0.01 0.25 4.97 -17.43 -0.09 0.16 16 23 N -0.90 -25.74 11.45 55.49 0.64 -25.11 16 24 Si 0.90 21.31 29.57 -169.99 -5.03 16.28 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 28 C 0.15 2.95 5.27 -3.71 -0.02 2.93 16 29 C -0.13 -1.34 5.05 -26.61 -0.13 -1.47 16 30 C 0.10 0.86 5.91 -3.71 -0.02 0.83 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.47 7.60 -51.93 -0.39 0.08 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.09 0.87 7.04 -51.93 -0.37 0.50 16 36 H 0.08 0.76 6.34 -51.93 -0.33 0.44 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.05 0.59 6.34 -51.93 -0.33 0.26 16 40 H 0.05 0.81 8.14 -51.92 -0.42 0.39 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.08 1.97 6.46 -51.93 -0.34 1.63 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 47 H 0.05 0.98 6.51 -51.93 -0.34 0.65 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.09 0.97 6.49 -51.93 -0.34 0.63 16 50 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.08 0.68 5.75 -51.93 -0.30 0.39 16 LS Contribution 392.61 15.07 5.92 5.92 Total: -1.00 -32.40 392.61 -9.34 -41.75 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -9.48 Total: -2.30 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: -1.91 Total: -3.30 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 1.06 Total: -51.34 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: 0.09 Total: -7.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.40 -9.34 -41.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961394182.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.840 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds