Wall clock time and date at job start Wed Apr 1 2020 05:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.33318 * 126.81419 * 2 1 4 4 N 1.28505 * 109.43793 * 179.97438 * 3 2 1 5 5 N 1.28714 * 110.63963 * 359.71788 * 4 3 2 6 6 H 0.97006 * 126.03556 * 180.30156 * 5 4 3 7 7 C 1.37002 * 126.81452 * 179.97438 * 2 1 3 8 8 C 1.47233 * 127.18823 * 0.02562 * 7 2 1 9 9 O 1.21626 * 120.00183 * 256.13186 * 8 7 2 10 10 N 1.34779 * 120.00668 * 76.12662 * 8 7 2 11 11 C 1.46924 * 120.63566 * 174.06399 * 10 8 7 12 12 C 1.53198 * 108.77282 * 233.63037 * 11 10 8 13 13 C 1.53036 * 109.31552 * 305.36546 * 12 11 10 14 14 C 1.52996 * 109.46182 * 181.38741 * 13 12 11 15 15 H 1.09004 * 109.49484 * 300.03585 * 14 13 12 16 16 C 1.53043 * 109.52572 * 60.11330 * 14 13 12 17 17 C 1.53036 * 109.53716 * 181.33175 * 16 14 13 18 18 C 1.53189 * 109.31707 * 298.63732 * 17 16 14 19 19 N 1.46924 * 108.77291 * 54.63964 * 18 17 16 20 20 C 1.36935 * 120.63455 * 126.39402 * 19 18 17 21 21 H 1.08007 * 120.00047 * 214.79867 * 20 19 18 22 22 C 1.38810 * 119.99889 * 34.79547 * 20 19 18 23 23 N 1.31618 * 120.00252 * 12.78809 * 22 20 19 24 24 Si 1.86799 * 119.99876 * 192.79512 * 22 20 19 25 25 H 1.48497 * 109.47375 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47298 * 119.99596 * 24 22 20 27 27 H 1.48497 * 109.47218 * 239.99667 * 24 22 20 28 28 C 1.46930 * 118.73634 * 306.38966 * 19 18 17 29 29 C 1.53044 * 109.52747 * 61.37286 * 13 12 11 30 30 C 1.46928 * 120.62552 * 354.08683 * 10 8 7 31 31 H 1.09005 * 109.46812 * 270.01953 * 1 2 3 32 32 H 1.09002 * 109.47582 * 30.01984 * 1 2 3 33 33 H 1.09000 * 109.47664 * 150.02477 * 1 2 3 34 34 H 1.08996 * 109.58481 * 113.84395 * 11 10 8 35 35 H 1.08997 * 109.58505 * 353.41718 * 11 10 8 36 36 H 1.09000 * 109.49374 * 185.40853 * 12 11 10 37 37 H 1.09004 * 109.49564 * 65.31927 * 12 11 10 38 38 H 1.09000 * 109.45779 * 301.36010 * 13 12 11 39 39 H 1.08995 * 109.46133 * 301.35892 * 16 14 13 40 40 H 1.09008 * 109.45356 * 61.32864 * 16 14 13 41 41 H 1.08999 * 109.49592 * 58.59857 * 17 16 14 42 42 H 1.09003 * 109.49296 * 178.68624 * 17 16 14 43 43 H 1.09004 * 109.58601 * 174.42265 * 18 17 16 44 44 H 1.08997 * 109.58823 * 294.70751 * 18 17 16 45 45 H 0.97004 * 120.00164 * 179.97438 * 23 22 20 46 46 H 1.09007 * 109.58647 * 293.82055 * 28 19 18 47 47 H 1.08999 * 109.58875 * 173.40205 * 28 19 18 48 48 H 1.08995 * 109.49461 * 58.57891 * 29 13 12 49 49 H 1.09001 * 109.49931 * 178.67667 * 29 13 12 50 50 H 1.08998 * 109.58996 * 246.15900 * 30 10 8 51 51 H 1.09005 * 109.58855 * 6.58604 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3058 1.0673 0.0000 4 7 3.5323 0.6835 0.0005 5 7 3.6055 -0.6015 0.0068 6 1 4.4212 -1.1266 0.0127 7 6 2.3279 -1.0968 0.0005 8 6 1.9222 -2.5121 0.0006 9 8 1.9969 -3.1661 1.0233 10 7 1.4678 -3.0831 -1.1326 11 6 1.1821 -4.5234 -1.1827 12 6 1.9474 -5.1372 -2.3593 13 6 1.5943 -4.3814 -3.6423 14 6 2.3303 -5.0136 -4.8253 15 1 3.4057 -4.9596 -4.6556 16 6 1.9083 -6.4779 -4.9668 17 6 2.6690 -7.1196 -6.1294 18 6 2.3195 -6.3879 -7.4291 19 7 2.5870 -4.9542 -7.2512 20 6 3.3896 -4.2797 -8.1321 21 1 4.0285 -3.4833 -7.7797 22 6 3.3820 -4.6194 -9.4780 23 7 2.4377 -5.4032 -9.9537 24 14 4.7122 -3.9642 -10.6141 25 1 5.6487 -3.1110 -9.8395 26 1 5.4571 -5.1014 -11.2118 27 1 4.0880 -3.1590 -11.6945 28 6 1.9770 -4.2580 -6.1102 29 6 2.0142 -2.9161 -3.5048 30 6 1.2493 -2.2771 -2.3414 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5134 34 1 0.1123 -4.6791 -1.3216 35 1 1.5040 -4.9924 -0.2529 36 1 1.6697 -6.1858 -2.4666 37 1 3.0191 -5.0613 -2.1755 38 1 0.5191 -4.4366 -3.8121 39 1 2.1363 -7.0122 -4.0446 40 1 0.8370 -6.5298 -5.1614 41 1 3.7412 -7.0460 -5.9473 42 1 2.3853 -8.1686 -6.2148 43 1 2.9323 -6.7758 -8.2429 44 1 1.2653 -6.5391 -7.6613 45 1 2.4322 -5.6403 -10.8943 46 1 0.8942 -4.2333 -6.2336 47 1 2.3636 -3.2405 -6.0538 48 1 3.0852 -2.8613 -3.3101 49 1 1.7839 -2.3835 -4.4275 50 1 0.1850 -2.2495 -2.5748 51 1 1.6156 -1.2638 -2.1761 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961394182.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:48 Heat of formation + Delta-G solvation = 43.444655 kcal Electronic energy + Delta-G solvation = -31652.633880 eV Core-core repulsion = 27587.963752 eV Total energy + Delta-G solvation = -4064.670127 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -44.50012 -41.33866 -39.85111 -38.09815 -35.64833 -35.08545 -34.11240 -33.48767 -32.48591 -31.79847 -30.66533 -28.96959 -27.23940 -26.53780 -25.21368 -24.51593 -23.59490 -23.14683 -22.65896 -21.61238 -20.60304 -20.54471 -19.22223 -18.65347 -18.34330 -17.54106 -17.00385 -16.83298 -16.40633 -15.86350 -15.60317 -15.31025 -15.13081 -14.95545 -14.83090 -14.75454 -14.46677 -14.21589 -14.09539 -13.93801 -13.73035 -13.62924 -13.46234 -13.12268 -13.03180 -12.92873 -12.81420 -12.42164 -12.28714 -12.21687 -12.19791 -12.00484 -11.82615 -11.71656 -11.69266 -11.50831 -11.33887 -11.31851 -10.96262 -10.73001 -10.56257 -10.30601 -9.82210 -8.55431 -7.87288 -5.40693 0.06260 0.83067 1.19383 1.43212 1.45381 1.54180 1.55249 2.00700 2.48881 3.07313 3.27495 3.31504 3.61838 3.66683 3.73362 3.85086 3.91230 4.06520 4.10912 4.21028 4.29755 4.34942 4.44697 4.47681 4.56493 4.59927 4.62497 4.71192 4.78349 4.80482 4.85141 4.87048 4.92167 4.97348 5.00999 5.10535 5.14861 5.17302 5.22176 5.22348 5.33516 5.36815 5.44211 5.51133 5.57526 5.62342 5.62859 5.68979 5.81869 6.07406 6.42946 6.73275 7.15623 7.17325 7.88106 8.42205 9.17556 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.002626 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.610446 B =10658.309826 C =11903.816957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.026 3.974 3 N -0.288 5.288 4 N -0.070 5.070 5 N -0.353 5.353 6 H 0.465 0.535 7 C -0.057 4.057 8 C 0.600 3.400 9 O -0.554 6.554 10 N -0.582 5.582 11 C 0.114 3.886 12 C -0.122 4.122 13 C -0.070 4.070 14 C -0.084 4.084 15 H 0.050 0.950 16 C -0.098 4.098 17 C -0.134 4.134 18 C 0.179 3.821 19 N -0.611 5.611 20 C -0.265 4.265 21 H 0.059 0.941 22 C -0.044 4.044 23 N -0.933 5.933 24 Si 0.962 3.038 25 H -0.267 1.267 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.152 3.848 29 C -0.129 4.129 30 C 0.109 3.891 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.065 0.935 43 H 0.036 0.964 44 H -0.005 1.005 45 H 0.250 0.750 46 H 0.011 0.989 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.078 0.922 50 H 0.102 0.898 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.780 3.674 21.070 21.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 N -0.155 5.155 4 N -0.050 5.050 5 N -0.080 5.080 6 H 0.314 0.686 7 C -0.194 4.194 8 C 0.384 3.616 9 O -0.432 6.432 10 N -0.313 5.313 11 C -0.007 4.007 12 C -0.160 4.160 13 C -0.089 4.089 14 C -0.104 4.104 15 H 0.069 0.931 16 C -0.135 4.135 17 C -0.173 4.173 18 C 0.053 3.947 19 N -0.335 5.335 20 C -0.395 4.395 21 H 0.077 0.923 22 C -0.240 4.240 23 N -0.578 5.578 24 Si 0.790 3.210 25 H -0.191 1.191 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.027 3.973 29 C -0.167 4.167 30 C -0.013 4.013 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.013 0.987 45 H 0.059 0.941 46 H 0.029 0.971 47 H 0.068 0.932 48 H 0.074 0.926 49 H 0.096 0.904 50 H 0.120 0.880 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.052 4.665 21.433 22.306 hybrid contribution 0.973 -0.989 -1.350 1.936 sum -3.079 3.676 20.083 20.647 Atomic orbital electron populations 1.20395 0.83266 1.05245 1.04662 1.22733 0.99573 0.86482 1.02612 1.74847 0.95659 1.26965 1.17981 1.78178 1.15899 0.92648 1.18297 1.45389 1.08912 1.06308 1.47349 0.68563 1.21807 0.86262 0.96344 1.14939 1.16798 0.77835 0.83328 0.83641 1.90858 1.56106 1.63518 1.32682 1.48106 1.62789 1.10166 1.10275 1.21866 1.01444 0.77591 0.99807 1.21978 1.00250 1.00725 0.93015 1.21063 1.00594 0.93847 0.93402 1.21479 0.99098 0.95506 0.94307 0.93102 1.21462 0.99319 0.95153 0.97579 1.22036 0.99630 0.98901 0.96746 1.20499 0.95896 0.83687 0.94570 1.44238 1.55994 1.04934 1.28287 1.19431 1.15787 1.16287 0.88007 0.92306 1.25937 0.99392 1.00390 0.98325 1.70157 1.33632 1.40712 1.13305 0.85290 0.79170 0.77630 0.78864 1.19125 1.21721 1.21700 1.21114 0.94475 0.94827 0.86921 1.21971 1.00012 0.96418 0.98274 1.21985 1.02328 0.94168 0.82820 0.89070 0.88448 0.89149 0.88596 0.89338 0.88669 0.92429 0.89820 0.90105 0.92502 0.93664 0.91641 0.94571 0.98660 0.94136 0.97113 0.93243 0.92565 0.90393 0.87965 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.28 71.24 0.73 -0.17 16 2 C 0.03 0.49 6.49 42.04 0.27 0.76 16 3 N -0.29 -6.65 12.35 -47.89 -0.59 -7.24 16 4 N -0.07 -1.55 13.35 37.02 0.49 -1.05 16 5 N -0.35 -6.10 7.07 -48.53 -0.34 -6.44 16 6 H 0.46 5.20 8.96 -219.89 -1.97 3.23 16 7 C -0.06 -1.04 5.39 40.41 0.22 -0.82 16 8 C 0.60 11.47 7.32 86.61 0.63 12.10 16 9 O -0.55 -14.13 16.55 -4.11 -0.07 -14.20 16 10 N -0.58 -8.89 2.97 -822.98 -2.45 -11.33 16 11 C 0.11 1.58 6.42 86.36 0.55 2.13 16 12 C -0.12 -1.87 5.05 30.67 0.15 -1.72 16 13 C -0.07 -1.33 1.74 -10.77 -0.02 -1.35 16 14 C -0.08 -2.36 1.92 -10.72 -0.02 -2.38 16 15 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 16 C -0.10 -2.69 4.86 30.62 0.15 -2.55 16 17 C -0.13 -4.73 6.08 30.67 0.19 -4.55 16 18 C 0.18 8.48 5.24 86.36 0.45 8.93 16 19 N -0.61 -29.91 2.96 -699.10 -2.07 -31.98 16 20 C -0.26 -14.42 9.52 84.03 0.80 -13.62 16 21 H 0.06 3.16 7.86 -2.91 -0.02 3.13 16 22 C -0.04 -2.47 4.97 84.86 0.42 -2.04 16 23 N -0.93 -55.07 11.45 21.65 0.25 -54.82 16 24 Si 0.96 44.59 29.57 68.60 2.03 46.62 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 27 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 28 C 0.15 5.77 5.27 86.36 0.46 6.22 16 29 C -0.13 -2.34 5.05 30.67 0.15 -2.19 16 30 C 0.11 1.50 5.91 86.36 0.51 2.01 16 31 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 32 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 33 H 0.09 0.81 7.60 -2.39 -0.02 0.79 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 1.39 7.04 -2.39 -0.02 1.37 16 36 H 0.10 1.30 6.34 -2.39 -0.02 1.29 16 37 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.73 6.34 -2.39 -0.02 1.72 16 40 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.04 1.96 6.46 -2.39 -0.02 1.94 16 44 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 45 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.01 0.42 8.14 -2.38 -0.02 0.41 16 47 H 0.05 1.87 6.51 -2.39 -0.02 1.85 16 48 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.08 1.60 6.49 -2.39 -0.02 1.59 16 50 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.08 1.18 5.75 -2.38 -0.01 1.16 16 Total: -1.00 -72.13 392.61 1.89 -70.24 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -1.02 Total: 9.44 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 5.66 Total: 0.76 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -4.71 Total: -112.86 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.07 Total: -14.20 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -72.13 1.89 -70.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961394182.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.688 kcal (2) G-P(sol) polarization free energy of solvation -72.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds